SURE-tools 2.1.35__py3-none-any.whl → 2.1.36__py3-none-any.whl

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SURE/perturb/perturb.py CHANGED
@@ -8,7 +8,7 @@ class LabelMatrix:
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  def __init__(self):
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  self.labels_ = None
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- def fit_transform(self, labels, sep_pattern=r'[;_\-\s]', speedup: Literal['none','vectorize','parallel']='none'):
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+ def fit_transform(self, labels, control_label, sep_pattern=r'[;_\-\s]', speedup: Literal['none','vectorize','parallel']='none'):
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  if speedup=='none':
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  mat, self.labels_ = label_to_matrix(labels=labels, sep_pattern=sep_pattern)
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  elif speedup=='vectorize':
@@ -17,6 +17,10 @@ class LabelMatrix:
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  mat, self.labels_ = parallel_label_to_matrix(labels=labels, sep_pattern=sep_pattern)
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  self.labels_ = np.array(self.labels_)
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+
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+ idx = np.where(self.labels_==control_label)[0]
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+ mat = np.delete(mat, idx, axis=1)
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+ self.labels_ = np.delete(self.labels_, idx)
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  return mat
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  def inverse_transform(self, matrix):
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.35
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+ Version: 2.1.36
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
@@ -12,14 +12,14 @@ SURE/flow/__init__.py,sha256=rsAjYsh1xVIrxBCuwOE0Q_6N5th1wBgjJceV0ABPG3c,183
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  SURE/flow/flow_stats.py,sha256=cBBsPEDpWNMpbzlyQ3f0385RSrX6_5RCH2caOyi4ihM,9908
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  SURE/flow/plot_quiver.py,sha256=UbmuScUcgbQHeMmjKmgqxjrIjHhiHx0VWct16UMMwuE,8110
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  SURE/perturb/__init__.py,sha256=ouxShhbxZM4r5Gf7GmKiutrsmtyq7QL8rHjhgF0BU08,32
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- SURE/perturb/perturb.py,sha256=CqO3xPfNA3cG175tadDidKvGsTu_yKfJRRLn_93awKM,3303
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+ SURE/perturb/perturb.py,sha256=GVNgfNLGKic_jOwuhMLW8VZa2Md_9O3cwL2Dwik-sTI,3476
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  SURE/utils/__init__.py,sha256=QJUOfrXzdWSmoM0P3LH8oKEHttzCWqpDy2UF0F0dtN4,673
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  SURE/utils/custom_mlp.py,sha256=rHnx9jEef02zfCUdbYVCmbuHcDdIBmRgt__wpdpZvYg,8104
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  SURE/utils/queue.py,sha256=E_5PA5EWcBoGAZj8BkKQnkCK0p4C-4-xcTPqdIXaPXU,1892
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  SURE/utils/utils.py,sha256=IUHjDDtYaAYllCWsZyIzqQwaLul6fJRvHRH4vIYcR-c,8462
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- sure_tools-2.1.35.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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- sure_tools-2.1.35.dist-info/METADATA,sha256=YFpehlaqDEuAK-0FPQA8AivqA4PJM1kWcEppjSk-p50,2651
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- sure_tools-2.1.35.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- sure_tools-2.1.35.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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- sure_tools-2.1.35.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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- sure_tools-2.1.35.dist-info/RECORD,,
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+ sure_tools-2.1.36.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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+ sure_tools-2.1.36.dist-info/METADATA,sha256=ImWAYH50tlvLpd6rDzNya96MEQbICgIzbq2I1mcsAzY,2651
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+ sure_tools-2.1.36.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ sure_tools-2.1.36.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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+ sure_tools-2.1.36.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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+ sure_tools-2.1.36.dist-info/RECORD,,