SURE-tools 2.1.26__py3-none-any.whl → 2.1.28__py3-none-any.whl

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SURE/PerturbFlow.py CHANGED
@@ -196,7 +196,7 @@ class PerturbFlow(nn.Module):
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  if self.cell_factor_size>0:
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  self.cell_factor_effect = nn.ModuleList()
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  for i in np.arange(self.cell_factor_size):
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- self.cell_factor_effect.append(MLP(
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+ self.cell_factor_effect.append(ZeroBiasMLP(
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  [self.latent_dim+1] + self.decoder_hidden_layers + [self.latent_dim],
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  activation=activate_fct,
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  output_activation=None,
SURE/utils/__init__.py CHANGED
@@ -7,7 +7,7 @@ from .utils import find_partitions_greedy
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  from .queue import PriorityQueue
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- from .custom_mlp import MLP, Exp
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+ from .custom_mlp import MLP, Exp, ZeroBiasMLP
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  # Importing modules
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  #from . import utils
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.26
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+ Version: 2.1.28
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
@@ -1,4 +1,4 @@
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- SURE/PerturbFlow.py,sha256=vNxcG3rYg7UqCoTmhYovvOagR8A4DWO1zXSm2FuLQGs,50952
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+ SURE/PerturbFlow.py,sha256=kE4z0sYV4ujmo14xZ6axrPOdW9yRL84R2o4HCf1wy1I,50960
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  SURE/SURE.py,sha256=hVEjJtFVQkk_rX3KEaQgWoDTfxpDHf1p6j38UJjNkyY,47457
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  SURE/__init__.py,sha256=NOJI_K-eCqPgStXXvgl3wIEMp6d8saMTDYLJ7Ga9MqE,293
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  SURE/assembly/__init__.py,sha256=jxZLURXKPzXe21LhrZ09LgZr33iqdjlQy4oSEj5gR2Q,172
@@ -13,13 +13,13 @@ SURE/flow/flow_stats.py,sha256=3F3waCuEbIQ7bsiGga4cUvJphYdWA307SyGwEh8EzM8,10514
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  SURE/flow/plot_quiver.py,sha256=wC42yLKfXYOGrrd4u9AbZS_6QiPUJ9QBXaOso55LjdA,8110
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  SURE/perturb/__init__.py,sha256=ouxShhbxZM4r5Gf7GmKiutrsmtyq7QL8rHjhgF0BU08,32
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  SURE/perturb/perturb.py,sha256=CqO3xPfNA3cG175tadDidKvGsTu_yKfJRRLn_93awKM,3303
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- SURE/utils/__init__.py,sha256=Htqv4KqVKcRiaaTBsR-6yZ4LSlbhbzutjNKXGD9-uds,660
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+ SURE/utils/__init__.py,sha256=QJUOfrXzdWSmoM0P3LH8oKEHttzCWqpDy2UF0F0dtN4,673
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  SURE/utils/custom_mlp.py,sha256=PCnXhJdK_g6z51JJqCdrNGBoOU_SjN5XYAOhB_2BxNo,8105
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  SURE/utils/queue.py,sha256=E_5PA5EWcBoGAZj8BkKQnkCK0p4C-4-xcTPqdIXaPXU,1892
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  SURE/utils/utils.py,sha256=IUHjDDtYaAYllCWsZyIzqQwaLul6fJRvHRH4vIYcR-c,8462
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- sure_tools-2.1.26.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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- sure_tools-2.1.26.dist-info/METADATA,sha256=IZ_TV4_fnRRC4LPcSUN6mPfUaxDdcarBwtFg7twrUuQ,2651
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- sure_tools-2.1.26.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- sure_tools-2.1.26.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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- sure_tools-2.1.26.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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- sure_tools-2.1.26.dist-info/RECORD,,
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+ sure_tools-2.1.28.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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+ sure_tools-2.1.28.dist-info/METADATA,sha256=-1NZUnRn0WLO1AMCO-xvVnOpqcZiE5J3wQLYcWzO3sc,2651
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+ sure_tools-2.1.28.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ sure_tools-2.1.28.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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+ sure_tools-2.1.28.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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+ sure_tools-2.1.28.dist-info/RECORD,,