SURE-tools 2.0.5__py3-none-any.whl → 2.0.6__py3-none-any.whl

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Files changed (7) hide show
  1. SURE/SURE.py +5 -4
  2. {sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/METADATA +1 -1
  3. {sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/RECORD +7 -7
  4. {sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/WHEEL +0 -0
  5. {sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/entry_points.txt +0 -0
  6. {sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/licenses/LICENSE +0 -0
  7. {sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/top_level.txt +0 -0
SURE/SURE.py CHANGED
@@ -11,7 +11,7 @@ from torch.distributions import constraints
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  from torch.distributions.transforms import SoftmaxTransform
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  from .utils.custom_mlp import MLP, Exp
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- from .utils.utils import CustomDataset, CustomDataset3, CustomDataset4, tensor_to_numpy, convert_to_tensor
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+ from .utils.utils import CustomDataset, CustomDataset2, CustomDataset4, tensor_to_numpy, convert_to_tensor
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  import os
@@ -836,13 +836,14 @@ class SURE(nn.Module):
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  """
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  xs = self.preprocess(xs)
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  xs = convert_to_tensor(xs, device=self.get_device())
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- dataset = CustomDataset(xs)
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+ ps = convert_to_tensor(perturb, device=self.get_device())
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+ dataset = CustomDataset2(xs,ps)
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  dataloader = DataLoader(dataset, batch_size=batch_size, shuffle=False)
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  Z = []
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  with tqdm(total=len(dataloader), desc='', unit='batch') as pbar:
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- for X_batch, _ in dataloader:
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- zns = self._cell_move(X_batch, factor_idx, perturb)
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+ for X_batch, P_batch, _ in dataloader:
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+ zns = self._cell_move(X_batch, factor_idx, P_batch)
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  Z.append(tensor_to_numpy(zns))
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  pbar.update(1)
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{sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.0.5
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+ Version: 2.0.6
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.0.5.dist-info → sure_tools-2.0.6.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- SURE/SURE.py,sha256=0brySH3zXtYAW8eff5BzL1vYq_nmR82wpEPeH-FcLE8,50527
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+ SURE/SURE.py,sha256=SZHxzI1YXVsdOAIFNE56pH3m_b6-mMegZuUYLnf9t3Y,50606
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  SURE/SURE2.py,sha256=8wlnMwb1xuf9QUksNkWdWx5ZWq-xIy9NLx8RdUnE82o,48501
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  SURE/__init__.py,sha256=mxdLoWa2fPEM4-WkJetMfcecpzqJ8YsM4lOoKHSLTrU,207
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  SURE/assembly/__init__.py,sha256=jxZLURXKPzXe21LhrZ09LgZr33iqdjlQy4oSEj5gR2Q,172
@@ -15,9 +15,9 @@ SURE/utils/__init__.py,sha256=Htqv4KqVKcRiaaTBsR-6yZ4LSlbhbzutjNKXGD9-uds,660
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  SURE/utils/custom_mlp.py,sha256=07TYX1HgxfEjb_3i5MpiZfNhOhx3dKntuwGkrpteWiM,7036
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  SURE/utils/queue.py,sha256=E_5PA5EWcBoGAZj8BkKQnkCK0p4C-4-xcTPqdIXaPXU,1892
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  SURE/utils/utils.py,sha256=IUHjDDtYaAYllCWsZyIzqQwaLul6fJRvHRH4vIYcR-c,8462
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- sure_tools-2.0.5.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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- sure_tools-2.0.5.dist-info/METADATA,sha256=DSDQeffAyyRgBfKxdWTsk7DBd71C3zGdnMlKY4bz1_g,2650
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- sure_tools-2.0.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- sure_tools-2.0.5.dist-info/entry_points.txt,sha256=u12payZYgCBy5FCwRHP6AlSQhKCiWSEDwj68r1DVdn8,40
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- sure_tools-2.0.5.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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- sure_tools-2.0.5.dist-info/RECORD,,
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+ sure_tools-2.0.6.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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+ sure_tools-2.0.6.dist-info/METADATA,sha256=JxYp73Z3lPkJpz4erR2ugrSGMz4cc98HSs8fhKMByPM,2650
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+ sure_tools-2.0.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ sure_tools-2.0.6.dist-info/entry_points.txt,sha256=u12payZYgCBy5FCwRHP6AlSQhKCiWSEDwj68r1DVdn8,40
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+ sure_tools-2.0.6.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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+ sure_tools-2.0.6.dist-info/RECORD,,