SURE-tools 1.0.1__py3-none-any.whl → 1.0.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- SURE/SURE.py +1 -1
- {SURE_tools-1.0.1.dist-info → sure_tools-1.0.3.dist-info}/METADATA +12 -2
- {SURE_tools-1.0.1.dist-info → sure_tools-1.0.3.dist-info}/RECORD +7 -7
- {SURE_tools-1.0.1.dist-info → sure_tools-1.0.3.dist-info}/WHEEL +1 -1
- {SURE_tools-1.0.1.dist-info → sure_tools-1.0.3.dist-info}/entry_points.txt +0 -0
- {SURE_tools-1.0.1.dist-info → sure_tools-1.0.3.dist-info/licenses}/LICENSE +0 -0
- {SURE_tools-1.0.1.dist-info → sure_tools-1.0.3.dist-info}/top_level.txt +0 -0
SURE/SURE.py
CHANGED
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@@ -102,7 +102,7 @@ class SURE(nn.Module):
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z_dist: Literal['normal','studentt','laplacian','cauchy','gumbel'] = 'normal',
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loss_func: Literal['negbinomial','poisson','multinomial'] = 'negbinomial',
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inverse_dispersion: float = 10.0,
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use_zeroinflate: bool =
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use_zeroinflate: bool = True,
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hidden_layers: list = [500],
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hidden_layer_activation: Literal['relu','softplus','leakyrelu','linear'] = 'relu',
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nn_dropout: float = 0.1,
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.
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Metadata-Version: 2.4
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Name: SURE-tools
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Version: 1.0.
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Version: 1.0.3
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Summary: Succinct Representation of Single Cells
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Home-page: https://github.com/ZengFLab/SURE
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Author: Feng Zeng
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@@ -26,6 +26,16 @@ Requires-Dist: networkx
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Requires-Dist: matplotlib
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Requires-Dist: seaborn
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Requires-Dist: fa2-modified
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Dynamic: author
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Dynamic: author-email
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Dynamic: classifier
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Dynamic: description
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Dynamic: home-page
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Dynamic: requires-python
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Dynamic: summary
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# SURE: SUccinct REpresentation of cells
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SURE introduces a vector quantization-based probabilistic generative model for calling metacells and use them as landmarks that form a coordinate system for cell ID. Analyzing single-cell omics data in a manner analogous to reference genome-based genomic analysis.
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@@ -1,4 +1,4 @@
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SURE/SURE.py,sha256=
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SURE/SURE.py,sha256=AMU2EZKJVIE_n4W_K4crVvcpvFOtiiplczoGOCPvvPY,46959
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SURE/__init__.py,sha256=SbIRwAVBnNhza9vbsUH4N04atr0q_Abp04pCUTBhNio,127
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SURE/assembly/__init__.py,sha256=jxZLURXKPzXe21LhrZ09LgZr33iqdjlQy4oSEj5gR2Q,172
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SURE/assembly/assembly.py,sha256=6IMdelPOiRO4mUb4dC7gVCoF1Uvfw86-Map8P_jnUag,21477
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@@ -9,9 +9,9 @@ SURE/utils/__init__.py,sha256=Htqv4KqVKcRiaaTBsR-6yZ4LSlbhbzutjNKXGD9-uds,660
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SURE/utils/custom_mlp.py,sha256=07TYX1HgxfEjb_3i5MpiZfNhOhx3dKntuwGkrpteWiM,7036
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SURE/utils/queue.py,sha256=E_5PA5EWcBoGAZj8BkKQnkCK0p4C-4-xcTPqdIXaPXU,1892
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SURE/utils/utils.py,sha256=IUHjDDtYaAYllCWsZyIzqQwaLul6fJRvHRH4vIYcR-c,8462
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sure_tools-1.0.3.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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sure_tools-1.0.3.dist-info/METADATA,sha256=wDNCiP3d4pC2Ik5gMkFgAKLWHaE3X1C7wVCMoND2ujY,2650
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sure_tools-1.0.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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sure_tools-1.0.3.dist-info/entry_points.txt,sha256=u12payZYgCBy5FCwRHP6AlSQhKCiWSEDwj68r1DVdn8,40
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sure_tools-1.0.3.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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sure_tools-1.0.3.dist-info/RECORD,,
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