STIC-JPL 1.6.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- STIC_JPL/ECOv002-cal-val-STIC-JPL-inputs.csv +1066 -0
- STIC_JPL/ECOv002-cal-val-STIC-JPL-outputs.csv +1066 -0
- STIC_JPL/ECOv002_calval_STIC_inputs.py +19 -0
- STIC_JPL/FVC_from_NDVI.py +49 -0
- STIC_JPL/LAI_from_NDVI.py +61 -0
- STIC_JPL/STIC_JPL.py +5 -0
- STIC_JPL/__init__.py +4 -0
- STIC_JPL/canopy_air_stream.py +37 -0
- STIC_JPL/celcius_to_kelvin.py +11 -0
- STIC_JPL/closure.py +68 -0
- STIC_JPL/constants.py +31 -0
- STIC_JPL/exceptions.py +3 -0
- STIC_JPL/generate_STIC_inputs.py +65 -0
- STIC_JPL/initialize_with_solar.py +80 -0
- STIC_JPL/initialize_without_solar.py +85 -0
- STIC_JPL/iterate_with_solar.py +144 -0
- STIC_JPL/iterate_without_solar.py +121 -0
- STIC_JPL/model.py +420 -0
- STIC_JPL/net_radiation.py +38 -0
- STIC_JPL/process_STIC_table.py +152 -0
- STIC_JPL/root_zone_initialization.py +36 -0
- STIC_JPL/root_zone_iteration.py +66 -0
- STIC_JPL/soil_moisture_initialization.py +115 -0
- STIC_JPL/soil_moisture_iteration.py +131 -0
- STIC_JPL/verify.py +71 -0
- STIC_JPL/version.py +3 -0
- stic_jpl-1.6.0.dist-info/METADATA +103 -0
- stic_jpl-1.6.0.dist-info/RECORD +33 -0
- stic_jpl-1.6.0.dist-info/WHEEL +5 -0
- stic_jpl-1.6.0.dist-info/top_level.txt +2 -0
- tests/test_import_STIC.py +2 -0
- tests/test_import_dependencies.py +18 -0
- tests/test_verify.py +5 -0
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from typing import Union, Tuple
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import numpy as np
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import rasters as rt
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from rasters import Raster
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from SEBAL_soil_heat_flux import calculate_SEBAL_soil_heat_flux
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from .constants import *
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from .canopy_air_stream import calculate_canopy_air_stream_vapor_pressure
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from .soil_moisture_iteration import iterate_soil_moisture
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def iterate_with_solar(
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seconds_of_day: Union[Raster, np.ndarray], # Seconds of the day
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ST_C: Union[Raster, np.ndarray], # Soil temperature (°C)
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NDVI: Union[Raster, np.ndarray], # Normalized Difference Vegetation Index
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albedo: Union[Raster, np.ndarray], # Albedo
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gB_ms: Union[Raster, np.ndarray], # boundary layer conductance (m/s)
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gS_ms: Union[Raster, np.ndarray], # stomatal conductance (m/s)
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LE_Wm2: Union[Raster, np.ndarray], # latent heat flux (W/m^2)
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Rg_Wm2: Union[Raster, np.ndarray], # Incoming solar radiation (W/m^2)
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Rn_Wm2: Union[Raster, np.ndarray], # Net radiation (W/m^2)
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LWnet_Wm2: Union[Raster, np.ndarray], # Net longwave radiation (W/m^2)
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Ta_C: Union[Raster, np.ndarray], # Air temperature (°C)
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dTS_C: Union[Raster, np.ndarray], # Change in soil temperature (°C)
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Td_C: Union[Raster, np.ndarray], # Dew point temperature (°C)
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Tsd_C: Union[Raster, np.ndarray], # Soil dew point temperature (°C)
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Ea_hPa: Union[Raster, np.ndarray], # actual vapor pressure (hPa)
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Estar_hPa: Union[Raster, np.ndarray], # saturation vapor pressure at surface temperature (hPa)
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VPD_hPa: Union[Raster, np.ndarray], # Vapor pressure deficit (hPa)
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SVP_hPa: Union[Raster, np.ndarray], # Saturation vapor pressure (hPa)
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delta_hPa: Union[Raster, np.ndarray], # Slope of the saturation vapor pressure-temperature curve (hPa/°C)
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phi_Wm2: Union[Raster, np.ndarray], # Net radiation minus soil heat flux (W/m^2)
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Es_hPa: Union[Raster, np.ndarray], # Saturation vapor pressure (hPa)
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s1: Union[Raster, np.ndarray], # Soil moisture parameter
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s3: Union[Raster, np.ndarray], # Soil moisture parameter
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FVC: Union[Raster, np.ndarray], # Fractional canopy cover
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T0_C: Union[Raster, np.ndarray], # Reference temperature (°C)
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gB_by_gS: Union[Raster, np.ndarray], # Ratio of boundary layer conductance to stomatal conductance
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rho_kgm3: Union[Raster, np.ndarray, float] = RHO_KGM3, # Air density (kg/m^3)
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Cp_Jkg: Union[Raster, np.ndarray, float] = CP_JKG, # Specific heat at constant pressure (J/kg/K)
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gamma_hPa: Union[Raster, np.ndarray, float] = GAMMA_HPA, # Psychrometric constant (hPa/°C)
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G_method: str = "santanello" # Method for calculating soil heat flux
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) -> Tuple[Union[Raster, np.ndarray]]:
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"""
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This function calculates the canopy air stream vapor pressures, vapor pressure deficit at source,
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vapor pressure at the reference height, soil moisture, soil heat flux, and recompute phi.
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Parameters:
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seconds_of_day (np.ndarray): Seconds of the day
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ST_C (np.ndarray): Soil temperature (°C)
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NDVI (np.ndarray): Normalized Difference Vegetation Index
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albedo (np.ndarray): Albedo
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gB (np.ndarray): Boundary layer conductance (m/s)
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gS (np.ndarray): Stomatal conductance (m/s)
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LE (np.ndarray): Latent heat flux (W/m^2)
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Rg (np.ndarray): Incoming solar radiation (W/m^2)
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Rn (np.ndarray): Net radiation (W/m^2)
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LWnet (np.ndarray): Net longwave radiation (W/m^2)
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Ta_C (np.ndarray): Air temperature (°C)
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dTS (np.ndarray): Change in soil temperature (°C)
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Td_C (np.ndarray): Dew point temperature (°C)
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Tsd_C (np.ndarray): Soil dew point temperature (°C)
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Ea_hPa (np.ndarray): Actual vapor pressure (hPa)
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Estar (np.ndarray): Saturation vapor pressure at surface temperature (hPa)
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VPD_hPa (np.ndarray): Vapor pressure deficit (hPa)
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SVP_hPa (np.ndarray): Saturation vapor pressure (hPa)
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delta (np.ndarray): Slope of the saturation vapor pressure-temperature curve (hPa/°C)
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phi (np.ndarray): Net radiation minus soil heat flux (W/m^2)
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Es (np.ndarray): Saturation vapor pressure (hPa)
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s1 (np.ndarray): Soil moisture parameter
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s3 (np.ndarray): Soil moisture parameter
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fc (np.ndarray): Fractional canopy cover
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T0 (np.ndarray): Reference temperature (°C)
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gB_by_gS (np.ndarray): Ratio of boundary layer conductance to stomatal conductance
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gamma (np.ndarray): Psychrometric constant (hPa/°C)
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rho (np.ndarray): Air density (kg/m^3)
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cp (np.ndarray): Specific heat at constant pressure (J/kg/K)
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G_method (str): Method for calculating soil heat flux (santanello or SEBAL)
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Returns:
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e0star (np.ndarray): Canopy air stream vapor pressures
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D0 (np.ndarray): Vapor pressure deficit at source
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e0 (np.ndarray): Vapor pressure at the reference height
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SM (np.ndarray): Soil moisture
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G (np.ndarray): Soil heat flux
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"""
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# canopy air stream vapor pressures
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e0star = calculate_canopy_air_stream_vapor_pressure(
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LE=LE_Wm2,
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Ea_hPa=Ea_hPa,
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Estar=Estar_hPa,
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gB=gB_ms,
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gS=gS_ms
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)
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# vapor pressure deficit at source
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D0 = VPD_hPa + (delta_hPa * phi_Wm2 - (delta_hPa + gamma_hPa) * LE_Wm2) / (rho_kgm3 * Cp_Jkg * gB_ms)
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# Vapor pressure at the reference height (hPa)
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e0 = e0star - D0
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e0 = rt.where(e0 < 0, Es_hPa, e0)
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e0 = rt.where(e0 > e0star, e0star, e0)
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# calculate soil moisture
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SM = iterate_soil_moisture(
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delta_hPa=delta_hPa,
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s1=s1,
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s3=s3,
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ST_C=ST_C,
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Ta_C=Ta_C,
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dTS_C=dTS_C,
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Td_C=Td_C,
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Tsd_C=Tsd_C,
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Rg_Wm2=Rg_Wm2,
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Rn_Wm2=Rn_Wm2,
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LWnet_Wm2=LWnet_Wm2,
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FVC=FVC,
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VPD_hPa=VPD_hPa,
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D0_hPa=D0,
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SVP_hPa=SVP_hPa,
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Ea_hPa=Ea_hPa,
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T0=T0_C,
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gamma_hPa=gamma_hPa
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)
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# calculate soil heat flux
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G = calculate_SEBAL_soil_heat_flux(
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ST_C=ST_C,
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NDVI=NDVI,
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albedo=albedo,
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Rn=Rn_Wm2
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)
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# recompute phi
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phi_Wm2 = Rn_Wm2 - G
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#
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alphaN = ((gS_ms * (e0star - Ea_hPa) * (2 * delta_hPa + 2 * gamma_hPa + gamma_hPa * gB_by_gS * (1 + SM))) / (
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2 * delta_hPa * (gamma_hPa * (T0_C - Ta_C) * (gB_ms + gS_ms) + gS_ms * (e0star - Ea_hPa))))
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return SM, G, e0, e0star, D0, alphaN
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from typing import Union, Tuple
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import numpy as np
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import rasters as rt
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from rasters import Raster
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from .constants import *
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from .canopy_air_stream import calculate_canopy_air_stream_vapor_pressure
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from .root_zone_initialization import calculate_root_zone_moisture
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def iterate_without_solar(
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LE: Union[Raster, np.ndarray], # Latent heat flux (W/m^2)
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PET: Union[Raster, np.ndarray], # Potential evapotranspiration (W/m^2)
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SM: Union[Raster, np.ndarray],
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ST_C: Union[Raster, np.ndarray], # Surface temperature (°C)
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Ta_C: Union[Raster, np.ndarray], # Air temperature (°C)
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dTS: Union[Raster, np.ndarray], # Surface-air temperature difference (°C)
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T0: Union[Raster, np.ndarray], # Reference temperature (°C)
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gB: Union[Raster, np.ndarray], # Boundary layer conductance (m/s)
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gS: Union[Raster, np.ndarray], # Stomatal conductance (m/s)
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Ea_hPa: Union[Raster, np.ndarray], # Actual vapor pressure (hPa)
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Td_C: Union[Raster, np.ndarray], # Dew point temperature (°C)
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VPD_hPa: Union[Raster, np.ndarray], # Vapor pressure deficit (hPa)
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Estar: Union[Raster, np.ndarray], # Saturation vapor pressure at surface temperature (hPa)
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delta: Union[Raster, np.ndarray], # Slope of the saturation vapor pressure-temperature curve (hPa/°C)
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phi: Union[Raster, np.ndarray], # available energy (W/m^2)
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Ds: Union[Raster, np.ndarray], # Vapor pressure deficit at source (hPa)
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Es: Union[Raster, np.ndarray], # Saturation vapor pressure (hPa)
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s3: Union[Raster, np.ndarray], # Slope of the saturation vapor pressure and temperature
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s4: Union[Raster, np.ndarray], # Slope of the saturation vapor pressure and temperature
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gB_by_gS: Union[Raster, np.ndarray], # Ratio of boundary layer conductance to stomatal conductance
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gamma_hPa: Union[Raster, np.ndarray] = GAMMA_HPA, # Psychrometric constant (hPa/°C)
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rho_kgm3: Union[Raster, np.ndarray] = RHO_KGM3, # Air density (kg/m^3)
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Cp_Jkg: Union[Raster, np.ndarray] = CP_JKG, # Specific heat at constant pressure (J/kg/K)
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) -> Tuple[Union[Raster, np.ndarray]]:
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"""
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Iterate STIC model without knowing solar radiation.
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Parameters:
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LE (np.ndarray): Latent heat flux (W/m^2)
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PET (np.ndarray): Potential evapotranspiration (W/m^2)
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ST_C (np.ndarray): Surface temperature (°C)
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Ta_C (np.ndarray): Air temperature (°C)
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dTS (np.ndarray): Surface-air temperature difference (°C)
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T0 (np.ndarray): Reference temperature (°C)
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gB (np.ndarray): Boundary layer conductance (m/s)
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gS (np.ndarray): Stomatal conductance (m/s)
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Ea_hPa (np.ndarray): Actual vapor pressure (hPa)
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Td_C (np.ndarray): Dew point temperature (°C)
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VPD_hPa (np.ndarray): Vapor pressure deficit (hPa)
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Estar (np.ndarray): Saturation vapor pressure at surface temperature (hPa)
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delta (np.ndarray): Slope of the saturation vapor pressure-temperature curve (hPa/°C)
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phi (np.ndarray): available energy (W/m^2)
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Ds (np.ndarray): Vapor pressure deficit at source (hPa)
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Es (np.ndarray): Saturation vapor pressure (hPa)
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s3 (np.ndarray): Slope of the saturation vapor pressure and temperature
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s4 (np.ndarray): Soil moisture parameter
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gB_by_gS (np.ndarray): Ratio of boundary layer conductance to stomatal conductance
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gamma (np.ndarray): Psychrometric constant (hPa/°C)
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rho (np.ndarray): Air density (kg/m^3)
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cp (np.ndarray): Specific heat at constant pressure (J/kg/K)
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Returns:
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SM (np.ndarray): soil moisture (m³/m³)
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SMrz (np.ndarray): Root zone moisture (m³/m³)
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Ms (np.ndarray): Surface Moisture
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s1 (np.ndarray): lope of the saturation vapor pressure and temperature
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e0 (np.ndarray): Vapor pressure at the reference height (hPa)
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e0star (np.ndarray): Canopy air stream vapor pressures (hPa)
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Tsd_C (np.ndarray): Soil dew point temperature (°C)
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D0 (np.ndarray): Vapor pressure deficit at source (hPa)
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alphaN (np.ndarray): Alpha parameter
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"""
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# canopy air stream vapor pressures
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e0star = calculate_canopy_air_stream_vapor_pressure(
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LE=LE, # latent heat flux (W/m^2)
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Ea_hPa=Ea_hPa, # actual vapor pressure (hPa)
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Estar=Estar, # saturation vapor pressure at surface temperature (hPa)
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gB=gB, # boundary layer conductance (m/s)
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gS=gS # stomatal conductance (m/s),
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)
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# vapor pressure deficit at source
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D0 = VPD_hPa + (delta * phi - (delta + gamma_hPa) * LE) / (rho_kgm3 * Cp_Jkg * gB)
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D0 = rt.where(D0 < 0, Ds, D0)
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# Vapor pressure at the reference height (hPa)
|
|
90
|
+
e0 = rt.clip(e0star - D0, Es, e0star)
|
|
91
|
+
|
|
92
|
+
# re-estimating M (direct LST feedback into M computation)
|
|
93
|
+
s1 = (45.03 + 3.014 * Td_C + 0.05345 * Td_C ** 2 + 0.00224 * Td_C ** 3) * 1e-2 # Soil moisture parameter
|
|
94
|
+
Tsd_C = Td_C + (gamma_hPa * LE) / (rho_kgm3 * Cp_Jkg * gB * s1) # Soil dew point temperature (°C)
|
|
95
|
+
|
|
96
|
+
# Surface Moisture Ms
|
|
97
|
+
Ms = rt.clip(s1 * (Tsd_C - Td_C) / (s3 * (ST_C - Td_C)), 0, 1)
|
|
98
|
+
|
|
99
|
+
# Root zone moisture Mrz
|
|
100
|
+
SMrz = calculate_root_zone_moisture(
|
|
101
|
+
delta_hPa=delta, # Slope of the saturation vapor pressure-temperature curve (hPa/°C)
|
|
102
|
+
ST_C=ST_C, # Surface temperature (°C)
|
|
103
|
+
Ta_C=Ta_C, # Air temperature (°C)
|
|
104
|
+
Td_C=Td_C, # Dew point temperature (°C)
|
|
105
|
+
s11=s1, # Soil moisture parameter
|
|
106
|
+
s33=s3, # Soil moisture parameter
|
|
107
|
+
s44=s4, # Soil moisture parameter
|
|
108
|
+
Tsd_C=Tsd_C # Soil dew point temperature (°C)
|
|
109
|
+
)
|
|
110
|
+
|
|
111
|
+
# combining hysteresis logic to differentiate surface vs. rootzone water control
|
|
112
|
+
SM = rt.where((D0 > VPD_hPa) & (PET > phi) & (dTS > 0), SMrz, SM)
|
|
113
|
+
SM = rt.where((phi > 0) & (dTS > 0) & (Td_C <= 0), SMrz, SM)
|
|
114
|
+
SM = rt.clip(SM, 0, 1)
|
|
115
|
+
|
|
116
|
+
# checking convergence
|
|
117
|
+
# re-estimating alpha
|
|
118
|
+
alphaN = ((gS * (e0star - Ea_hPa) * (2 * delta + 2 * gamma_hPa + gamma_hPa * gB_by_gS * (1 + SM))) / (
|
|
119
|
+
2 * delta * (gamma_hPa * (T0 - Ta_C) * (gB + gS) + gS * (e0star - Ea_hPa))))
|
|
120
|
+
|
|
121
|
+
return SM, SMrz, Ms, s1, e0, e0star, Tsd_C, D0, alphaN
|
STIC_JPL/model.py
ADDED
|
@@ -0,0 +1,420 @@
|
|
|
1
|
+
from typing import Union, Callable
|
|
2
|
+
import logging
|
|
3
|
+
from datetime import datetime, timedelta
|
|
4
|
+
from os.path import join, abspath, expanduser
|
|
5
|
+
from typing import Dict, List
|
|
6
|
+
import numpy as np
|
|
7
|
+
import warnings
|
|
8
|
+
from verma_net_radiation import daylight_Rn_integration_verma
|
|
9
|
+
from sun_angles import calculate_daylight
|
|
10
|
+
|
|
11
|
+
from pytictoc import TicToc
|
|
12
|
+
|
|
13
|
+
import colored_logging as cl
|
|
14
|
+
from check_distribution import check_distribution
|
|
15
|
+
import rasters as rt
|
|
16
|
+
from GEOS5FP import GEOS5FP
|
|
17
|
+
from solar_apparent_time import calculate_solar_day_of_year, calculate_solar_hour_of_day
|
|
18
|
+
from SEBAL_soil_heat_flux import calculate_SEBAL_soil_heat_flux
|
|
19
|
+
|
|
20
|
+
from rasters import Raster, RasterGeometry
|
|
21
|
+
|
|
22
|
+
from daylight_evapotranspiration import daylight_ET_from_instantaneous_LE
|
|
23
|
+
|
|
24
|
+
from .constants import *
|
|
25
|
+
from .exceptions import MissingOfflineParameter
|
|
26
|
+
from .closure import STIC_closure
|
|
27
|
+
from .soil_moisture_initialization import initialize_soil_moisture
|
|
28
|
+
from .soil_moisture_iteration import iterate_soil_moisture
|
|
29
|
+
from .net_radiation import calculate_net_longwave_radiation
|
|
30
|
+
from .initialize_with_solar import initialize_with_solar
|
|
31
|
+
from .canopy_air_stream import calculate_canopy_air_stream_vapor_pressure
|
|
32
|
+
from .initialize_without_solar import initialize_without_solar
|
|
33
|
+
from .iterate_with_solar import iterate_with_solar
|
|
34
|
+
from .iterate_without_solar import iterate_without_solar
|
|
35
|
+
from .root_zone_initialization import calculate_root_zone_moisture
|
|
36
|
+
from .FVC_from_NDVI import FVC_from_NDVI
|
|
37
|
+
from .LAI_from_NDVI import LAI_from_NDVI
|
|
38
|
+
from .celcius_to_kelvin import celcius_to_kelvin
|
|
39
|
+
|
|
40
|
+
__author__ = 'Kaniska Mallick, Madeleine Pascolini-Campbell, Gregory Halverson'
|
|
41
|
+
|
|
42
|
+
logger = logging.getLogger(__name__)
|
|
43
|
+
|
|
44
|
+
def STIC_JPL(
|
|
45
|
+
ST_C: Union[Raster, np.ndarray],
|
|
46
|
+
emissivity: Union[Raster, np.ndarray],
|
|
47
|
+
NDVI: Union[Raster, np.ndarray],
|
|
48
|
+
albedo: Union[Raster, np.ndarray],
|
|
49
|
+
Rn_Wm2: Union[Raster, np.ndarray],
|
|
50
|
+
geometry: RasterGeometry = None,
|
|
51
|
+
time_UTC: datetime = None,
|
|
52
|
+
hour_of_day: np.ndarray = None,
|
|
53
|
+
day_of_year: np.ndarray = None,
|
|
54
|
+
GEOS5FP_connection: GEOS5FP = None,
|
|
55
|
+
Ta_C: Union[Raster, np.ndarray] = None,
|
|
56
|
+
RH: Union[Raster, np.ndarray] = None,
|
|
57
|
+
G_Wm2: Union[Raster, np.ndarray] = None,
|
|
58
|
+
G_method: str = DEFAULT_G_METHOD,
|
|
59
|
+
SM: Union[Raster, np.ndarray] = None,
|
|
60
|
+
SWin_Wm2: Union[Raster, np.ndarray] = None,
|
|
61
|
+
FVC: Union[Raster, np.ndarray] = None,
|
|
62
|
+
LAI: Union[Raster, np.ndarray] = None,
|
|
63
|
+
elevation_m: Union[Raster, np.ndarray] = None,
|
|
64
|
+
delta_hPa: Union[Raster, np.ndarray] = None,
|
|
65
|
+
gamma_hPa: Union[Raster, np.ndarray, float] = GAMMA_HPA,
|
|
66
|
+
rho_kgm3: Union[Raster, np.ndarray] = RHO_KGM3,
|
|
67
|
+
Cp_Jkg: Union[Raster, np.ndarray] = CP_JKG,
|
|
68
|
+
alpha: float = PT_ALPHA,
|
|
69
|
+
LE_convergence_target: float = LE_CONVERGENCE_TARGET_WM2,
|
|
70
|
+
max_iterations: int = MAX_ITERATIONS,
|
|
71
|
+
show_distributions: bool = SHOW_DISTRIBUTIONS,
|
|
72
|
+
use_variable_alpha: bool = USE_VARIABLE_ALPHA,
|
|
73
|
+
upscale_to_daylight: bool = UPSCALE_TO_DAYLIGHT,
|
|
74
|
+
constrain_negative_LE: bool = CONSTRAIN_NEGATIVE_LE,
|
|
75
|
+
resampling: str = RESAMPLING,
|
|
76
|
+
offline_mode: bool = False) -> Dict[str, Union[Raster, np.ndarray]]:
|
|
77
|
+
results = {}
|
|
78
|
+
# For daily upscaling
|
|
79
|
+
Rn_daily_Wm2 = None
|
|
80
|
+
EF = None
|
|
81
|
+
LE_daylight_Wm2 = None
|
|
82
|
+
ET_daily_kg = None
|
|
83
|
+
|
|
84
|
+
if geometry is None and isinstance(ST_C, Raster):
|
|
85
|
+
geometry = ST_C.geometry
|
|
86
|
+
|
|
87
|
+
if GEOS5FP_connection is None:
|
|
88
|
+
GEOS5FP_connection = GEOS5FP()
|
|
89
|
+
|
|
90
|
+
if (day_of_year is None or hour_of_day is None) and time_UTC is not None and geometry is not None:
|
|
91
|
+
day_of_year = calculate_solar_day_of_year(time_UTC=time_UTC, geometry=geometry)
|
|
92
|
+
hour_of_day = calculate_solar_hour_of_day(time_UTC=time_UTC, geometry=geometry)
|
|
93
|
+
|
|
94
|
+
if time_UTC is None and day_of_year is None and hour_of_day is None:
|
|
95
|
+
raise ValueError("no time given between time_UTC, day_of_year, and hour_of_day")
|
|
96
|
+
|
|
97
|
+
seconds_of_day = hour_of_day * 3600.0
|
|
98
|
+
|
|
99
|
+
# Check for missing variables in offline mode before any GEOS-5 FP retrievals
|
|
100
|
+
if offline_mode:
|
|
101
|
+
missing_vars = []
|
|
102
|
+
|
|
103
|
+
if Ta_C is None:
|
|
104
|
+
missing_vars.append("Ta_C")
|
|
105
|
+
if RH is None:
|
|
106
|
+
missing_vars.append("RH")
|
|
107
|
+
|
|
108
|
+
if missing_vars:
|
|
109
|
+
raise MissingOfflineParameter(
|
|
110
|
+
f"missing STIC-JPL inputs in offline mode: {', '.join(missing_vars)}"
|
|
111
|
+
)
|
|
112
|
+
|
|
113
|
+
# load air temperature in Celsius if not provided
|
|
114
|
+
if Ta_C is None:
|
|
115
|
+
Ta_C = GEOS5FP_connection.Ta_C(time_UTC=time_UTC, geometry=geometry, resampling=resampling)
|
|
116
|
+
|
|
117
|
+
# load relative humidity if not provided
|
|
118
|
+
if RH is None:
|
|
119
|
+
RH = GEOS5FP_connection.RH(time_UTC=time_UTC, geometry=geometry, resampling=resampling)
|
|
120
|
+
|
|
121
|
+
# calculate fraction of vegetation cover if it's not given
|
|
122
|
+
if FVC is None:
|
|
123
|
+
FVC = FVC_from_NDVI(NDVI)
|
|
124
|
+
|
|
125
|
+
# calculate leaf area index if it's not given
|
|
126
|
+
if LAI is None:
|
|
127
|
+
LAI = LAI_from_NDVI(NDVI)
|
|
128
|
+
|
|
129
|
+
# saturation air pressure in hPa
|
|
130
|
+
SVP_hPa = 6.13753 * (np.exp((17.27 * Ta_C) / (Ta_C + 237.3)))
|
|
131
|
+
|
|
132
|
+
# calculate delta term if it's not given
|
|
133
|
+
if delta_hPa is None:
|
|
134
|
+
# slope of saturation vapor pressure to air temperature (hpa/K)
|
|
135
|
+
delta_hPa = 4098 * SVP_hPa / (Ta_C + 237.3) ** 2
|
|
136
|
+
|
|
137
|
+
Ta_K = celcius_to_kelvin(Ta_C)
|
|
138
|
+
|
|
139
|
+
# actual vapor pressure at TA (hpa/K)
|
|
140
|
+
Ea_hPa = SVP_hPa * (RH)
|
|
141
|
+
Ea_Pa = Ea_hPa * 100.0
|
|
142
|
+
|
|
143
|
+
# vapor pressure deficit (hPa)
|
|
144
|
+
VPD_hPa = SVP_hPa - Ea_hPa
|
|
145
|
+
|
|
146
|
+
# swapping in the dew-point calculation from PT-JPL
|
|
147
|
+
Td_C = Ta_C - ((100 - RH * 100) / 5.0)
|
|
148
|
+
|
|
149
|
+
# difference between surface and air temperature (Celsius)
|
|
150
|
+
dTS_C = ST_C - Ta_C
|
|
151
|
+
|
|
152
|
+
# saturation vapor pressure at surface temperature (hPa/K)
|
|
153
|
+
Estar_hPa = 6.13753 * np.exp((17.27 * ST_C) / (ST_C + 237.3))
|
|
154
|
+
|
|
155
|
+
if SWin_Wm2 is None:
|
|
156
|
+
# if G is None and SM is None:
|
|
157
|
+
# raise ValueError("soil heat flux or soil moisture prior required if solar radiation is not given")
|
|
158
|
+
|
|
159
|
+
if G_Wm2 is None:
|
|
160
|
+
G_Wm2 = calculate_SEBAL_soil_heat_flux(
|
|
161
|
+
ST_C=ST_C,
|
|
162
|
+
NDVI=NDVI,
|
|
163
|
+
albedo=albedo,
|
|
164
|
+
Rn=Rn_Wm2,
|
|
165
|
+
)
|
|
166
|
+
|
|
167
|
+
phi_Wm2 = Rn_Wm2 - G_Wm2
|
|
168
|
+
|
|
169
|
+
# initialize without solar radiation
|
|
170
|
+
SM, SMrz, s1, s3, s33, s44, Ms, Tsd_C, Es_hPa, Ds = initialize_without_solar(
|
|
171
|
+
ST_C = ST_C, # Surface temperature in Celsius
|
|
172
|
+
Ta_C = Ta_C, # Air temperature in Celsius
|
|
173
|
+
dTS = dTS_C, # Temperature difference between surface and air in Celsius
|
|
174
|
+
Td_C = Td_C, # Dewpoint temperature in Celsius
|
|
175
|
+
Ea_hPa = Ea_hPa, # Actual vapor pressure in hPa
|
|
176
|
+
Estar_hPa = Estar_hPa, # Saturation vapor pressure at surface temperature (hPa/K)
|
|
177
|
+
SVP_hPa = SVP_hPa, # Saturation vapor pressure at the surface in hPa
|
|
178
|
+
delta_hPa = delta_hPa, # Slope of the saturation vapor pressure-temperature curve in hPa/K
|
|
179
|
+
phi_Wm2 = phi_Wm2, # Available energy in W/m2
|
|
180
|
+
gamma_hPa = gamma_hPa, # Psychrometric constant in hPa/°C
|
|
181
|
+
alpha = alpha # Priestley-Taylor alpha
|
|
182
|
+
)
|
|
183
|
+
else:
|
|
184
|
+
SM, SMrz, Ms, s1, s3, Ep_PT, Rnsoil, LWnet_Wm2, G_Wm2, Tsd_C, Ds, Es_hPa, phi_Wm2 = initialize_with_solar(
|
|
185
|
+
seconds_of_day = seconds_of_day, # time of day in seconds since midnight
|
|
186
|
+
Rg_Wm2 = SWin_Wm2, # solar radiation (W/m^2)
|
|
187
|
+
Rn_Wm2 = Rn_Wm2, # net radiation (W/m^2)
|
|
188
|
+
ST_C = ST_C, # surface temperature (Celsius)
|
|
189
|
+
emissivity = emissivity, # emissivity of the surface
|
|
190
|
+
Ta_C = Ta_C, # air temperature (Celsius)
|
|
191
|
+
dTS_C = dTS_C, # surface air temperature difference (Celsius)
|
|
192
|
+
Td_C = Td_C, # dew point temperature (Celsius)
|
|
193
|
+
VPD_hPa = VPD_hPa, # vapor pressure deficit (hPa)
|
|
194
|
+
SVP_hPa = SVP_hPa, # saturation vapor pressure at given air temperature (hPa)
|
|
195
|
+
Ea_hPa = Ea_hPa, # actual vapor pressure at air temperature (hPa)
|
|
196
|
+
Estar_hPa = Estar_hPa, # saturation vapor pressure at surface temperature (hPa)
|
|
197
|
+
delta_hPa = delta_hPa, # slope of saturation vapor pressure to air temperature (hpa/K)
|
|
198
|
+
NDVI=NDVI, # normalized difference vegetation index
|
|
199
|
+
FVC = FVC, # fractional vegetation cover
|
|
200
|
+
LAI = LAI, # leaf area index
|
|
201
|
+
albedo = albedo, # albedo of the surface
|
|
202
|
+
gamma_hPa=gamma_hPa, # psychrometric constant (hPa/°C)
|
|
203
|
+
G_method = DEFAULT_G_METHOD, # method for calculating soil heat flux
|
|
204
|
+
)
|
|
205
|
+
|
|
206
|
+
check_distribution(Ms, "Ms")
|
|
207
|
+
|
|
208
|
+
# STIC analytical equations (convergence on LE)
|
|
209
|
+
gB_ms, gS_ms, dT_C, EF = STIC_closure(
|
|
210
|
+
delta_hPa=delta_hPa,
|
|
211
|
+
phi_Wm2=phi_Wm2,
|
|
212
|
+
Es_hPa=Es_hPa,
|
|
213
|
+
Ea_hPa=Ea_hPa,
|
|
214
|
+
Estar_hPa=Estar_hPa,
|
|
215
|
+
SM=SM,
|
|
216
|
+
gamma_hPa=gamma_hPa,
|
|
217
|
+
rho_kgm3=rho_kgm3,
|
|
218
|
+
Cp_Jkg=Cp_Jkg,
|
|
219
|
+
alpha=alpha
|
|
220
|
+
)
|
|
221
|
+
|
|
222
|
+
gBB = gB_ms
|
|
223
|
+
gSS = gS_ms
|
|
224
|
+
gBB_by_gSS = rt.where(gSS == 0, 0, gBB / gSS)
|
|
225
|
+
gB_by_gS = rt.where(gS_ms == 0, 0, gB_ms / gS_ms)
|
|
226
|
+
dT_C = dT_C
|
|
227
|
+
T0_C = dT_C + Ta_C
|
|
228
|
+
|
|
229
|
+
PET_Wm2 = ((delta_hPa * phi_Wm2 + rho_kgm3 * Cp_Jkg * gB_ms * VPD_hPa) / (delta_hPa + gamma_hPa)) # Penman potential evaporation
|
|
230
|
+
|
|
231
|
+
gR = (4 * SB_SIGMA * (Ta_C + 273) ** 3 * emissivity) / (rho_kgm3 * Cp_Jkg)
|
|
232
|
+
omega = ((delta_hPa / gamma_hPa) + 1) / ((delta_hPa / gamma_hPa) + 1 + gB_by_gS)
|
|
233
|
+
LE_eq = (phi_Wm2 * (delta_hPa / gamma_hPa)) / ((delta_hPa / gamma_hPa) + 1)
|
|
234
|
+
LE_imp = (Cp_Jkg * 0.0289644 / gamma_hPa) * gS_ms * 40 * VPD_hPa
|
|
235
|
+
LE_init = omega * LE_eq + (1 - omega) * LE_imp
|
|
236
|
+
dry = (Ds > VPD_hPa) & (PET_Wm2 > phi_Wm2) & (dTS_C > 0) & (Td_C <= 0)
|
|
237
|
+
omega = rt.where(dry,
|
|
238
|
+
((delta_hPa / gamma_hPa) + 1 + gR / gB_ms) / ((delta_hPa / gamma_hPa) + 1 + gB_ms / gS_ms + gR / gS_ms + gR / gB_ms),
|
|
239
|
+
omega)
|
|
240
|
+
LE_eq = rt.where(dry, (phi_Wm2 * (delta_hPa / gamma_hPa)) / ((delta_hPa / gamma_hPa) + 1 + gR / gB_ms), LE_eq)
|
|
241
|
+
LE_init = rt.where(dry, omega * LE_eq + (1 - omega * LE_imp), LE_init)
|
|
242
|
+
|
|
243
|
+
# sensible heat flux
|
|
244
|
+
H_Wm2 = ((gamma_hPa * phi_Wm2 * (1 + gB_by_gS) - rho_kgm3 * Cp_Jkg * gB_ms * VPD_hPa) / (delta_hPa + gamma_hPa * (1 + (gB_by_gS))))
|
|
245
|
+
|
|
246
|
+
LE_Wm2_new = LE_init
|
|
247
|
+
LE_Wm2_change = LE_convergence_target
|
|
248
|
+
LE_Wm2_old = LE_Wm2_new
|
|
249
|
+
LE_canopy_Wm2 = None
|
|
250
|
+
PT_Wm2 = None
|
|
251
|
+
iteration = 1
|
|
252
|
+
LE_Wm2_max_change = 0
|
|
253
|
+
|
|
254
|
+
t = TicToc()
|
|
255
|
+
t.tic()
|
|
256
|
+
|
|
257
|
+
while (np.nanmax(LE_Wm2_change) >= LE_convergence_target and iteration <= max_iterations):
|
|
258
|
+
logger.info(f"running STIC iteration {cl.val(iteration)} / {cl.val(max_iterations)}")
|
|
259
|
+
|
|
260
|
+
if SWin_Wm2 is None:
|
|
261
|
+
SM, SMrz, Ms, s1, e0, e0star, Tsd_C, D0, alphaN = iterate_without_solar(
|
|
262
|
+
LE = LE_Wm2_new, # Latent heat flux (W/m^2)
|
|
263
|
+
PET = PET_Wm2, # Potential evapotranspiration (W/m^2)
|
|
264
|
+
SM = SM,
|
|
265
|
+
ST_C = ST_C, # Surface temperature (°C)
|
|
266
|
+
Ta_C = Ta_C, # Air temperature (°C)
|
|
267
|
+
dTS = dTS_C, # Surface-air temperature difference (°C)
|
|
268
|
+
T0 = T0_C, # Reference temperature (°C)
|
|
269
|
+
gB = gB_ms, # Boundary layer conductance (m/s)
|
|
270
|
+
gS = gS_ms, # Stomatal conductance (m/s)
|
|
271
|
+
Ea_hPa = Ea_hPa, # Actual vapor pressure (hPa)
|
|
272
|
+
Td_C = Td_C, # Dew point temperature (°C)
|
|
273
|
+
VPD_hPa = VPD_hPa, # Vapor pressure deficit (hPa)
|
|
274
|
+
Estar = Estar_hPa, # Saturation vapor pressure at surface temperature (hPa)
|
|
275
|
+
delta = delta_hPa, # Slope of the saturation vapor pressure-temperature curve (hPa/°C)
|
|
276
|
+
phi = phi_Wm2, # available energy (W/m^2)
|
|
277
|
+
Ds = Ds, # Vapor pressure deficit at source (hPa)
|
|
278
|
+
Es = Es_hPa, # Saturation vapor pressure (hPa)
|
|
279
|
+
s3 = s3, # Slope of the saturation vapor pressure and temperature
|
|
280
|
+
s4 = s44, # Slope of the saturation vapor pressure and temperature
|
|
281
|
+
gB_by_gS = gB_by_gS, # Ratio of boundary layer conductance to stomatal conductance
|
|
282
|
+
gamma_hPa = gamma_hPa, # Psychrometric constant (hPa/°C)
|
|
283
|
+
rho_kgm3 = rho_kgm3, # Air density (kg/m^3)
|
|
284
|
+
Cp_Jkg = Cp_Jkg # Specific heat at constant pressure (J/kg/K)
|
|
285
|
+
)
|
|
286
|
+
else:
|
|
287
|
+
SM, G_Wm2, e0, e0star, D0, alphaN = iterate_with_solar(
|
|
288
|
+
seconds_of_day = seconds_of_day, # Seconds of the day
|
|
289
|
+
ST_C = ST_C, # Soil temperature (°C)
|
|
290
|
+
NDVI = NDVI, # Normalized Difference Vegetation Index
|
|
291
|
+
albedo = albedo, # Albedo
|
|
292
|
+
gB_ms = gB_ms, # boundary layer conductance (m/s)
|
|
293
|
+
gS_ms = gS_ms, # stomatal conductance (m/s)
|
|
294
|
+
LE_Wm2 = LE_Wm2_new, # latent heat flux (W/m^2)
|
|
295
|
+
Rg_Wm2 = SWin_Wm2, # Incoming solar radiation (W/m^2)
|
|
296
|
+
Rn_Wm2 = Rn_Wm2, # Net radiation (W/m^2)
|
|
297
|
+
LWnet_Wm2 = LWnet_Wm2, # Net longwave radiation (W/m^2)
|
|
298
|
+
Ta_C = Ta_C, # Air temperature (°C)
|
|
299
|
+
dTS_C = dTS_C, # Change in soil temperature (°C)
|
|
300
|
+
Td_C = Td_C, # Dew point temperature (°C)
|
|
301
|
+
Tsd_C = Tsd_C, # Soil dew point temperature (°C)
|
|
302
|
+
Ea_hPa = Ea_hPa, # actual vapor pressure (hPa)
|
|
303
|
+
Estar_hPa = Estar_hPa, # saturation vapor pressure at surface temperature (hPa)
|
|
304
|
+
VPD_hPa = VPD_hPa, # Vapor pressure deficit (hPa)
|
|
305
|
+
SVP_hPa = SVP_hPa, # Saturation vapor pressure (hPa)
|
|
306
|
+
delta_hPa = delta_hPa, # Slope of the saturation vapor pressure-temperature curve (hPa/°C)
|
|
307
|
+
phi_Wm2 = phi_Wm2, # Net radiation minus soil heat flux (W/m^2)
|
|
308
|
+
Es_hPa = Es_hPa, # Saturation vapor pressure (hPa)
|
|
309
|
+
s1 = s1, # Soil moisture parameter
|
|
310
|
+
s3 = s3, # Soil moisture parameter
|
|
311
|
+
FVC = FVC, # Fractional canopy cover
|
|
312
|
+
T0_C = T0_C, # Reference temperature (°C)
|
|
313
|
+
gB_by_gS = gB_by_gS, # Ratio of boundary layer conductance to stomatal conductance
|
|
314
|
+
gamma_hPa = gamma_hPa, # Psychrometric constant (hPa/°C)
|
|
315
|
+
rho_kgm3 = rho_kgm3, # Air density (kg/m^3)
|
|
316
|
+
Cp_Jkg = Cp_Jkg, # Specific heat at constant pressure (J/kg/K)
|
|
317
|
+
G_method = "santanello" # Method for calculating soil heat flux
|
|
318
|
+
)
|
|
319
|
+
|
|
320
|
+
if use_variable_alpha:
|
|
321
|
+
alpha = alphaN
|
|
322
|
+
logger.info(f"using variable Priestley-Taylor alpha with mean: {cl.val(np.round(np.nanmean(alpha), 3))}")
|
|
323
|
+
|
|
324
|
+
# re-estimated conductances and states
|
|
325
|
+
gB_ms, gS_ms, dT_C, EF = STIC_closure(
|
|
326
|
+
delta_hPa=delta_hPa, # Slope of the saturation vapor pressure-temperature curve (hPa/°C)
|
|
327
|
+
phi_Wm2=phi_Wm2, # available energy (W/m^2)
|
|
328
|
+
Es_hPa=Es_hPa, # Vapor pressure at the reference height (hPa)
|
|
329
|
+
Ea_hPa=Ea_hPa, # Actual vapor pressure (hPa)
|
|
330
|
+
Estar_hPa=Estar_hPa, # Saturation vapor pressure at the reference height (hPa)
|
|
331
|
+
SM=SM, # Soil moisture (m³/m³)
|
|
332
|
+
gamma_hPa=gamma_hPa, # Psychrometric constant (hPa/°C)
|
|
333
|
+
rho_kgm3=rho_kgm3, # Air density (kg/m³)
|
|
334
|
+
Cp_Jkg=Cp_Jkg, # Specific heat capacity of air (J/kg/°C)
|
|
335
|
+
alpha=alpha # Stability correction factor for conductance
|
|
336
|
+
)
|
|
337
|
+
|
|
338
|
+
gB_by_gS = rt.where(gS_ms == 0, 0, gB_ms / gS_ms)
|
|
339
|
+
T0_C = dT_C + Ta_C
|
|
340
|
+
# latent heat flux
|
|
341
|
+
LE_Wm2_new = ((delta_hPa * phi_Wm2 + rho_kgm3 * Cp_Jkg * gB_ms * VPD_hPa) / (delta_hPa + gamma_hPa * (1 + gB_by_gS)))
|
|
342
|
+
LE_Wm2_new = rt.where(LE_Wm2_new > phi_Wm2, phi_Wm2, LE_Wm2_new)
|
|
343
|
+
|
|
344
|
+
if constrain_negative_LE:
|
|
345
|
+
LE_Wm2_new = rt.where(LE_Wm2_new < 0, 0, LE_Wm2_new)
|
|
346
|
+
|
|
347
|
+
# Sensible Heat Flux
|
|
348
|
+
H_Wm2 = ((gamma_hPa * phi_Wm2 * (1 + gB_by_gS) - rho_kgm3 * Cp_Jkg * gB_ms * VPD_hPa) / (delta_hPa + gamma_hPa * (1 + (gB_by_gS))))
|
|
349
|
+
# potential evaporation (Penman)
|
|
350
|
+
PET_Wm2 = ((delta_hPa * phi_Wm2 + rho_kgm3 * Cp_Jkg * gB_ms * VPD_hPa) / (delta_hPa + gamma_hPa))
|
|
351
|
+
# Potential Transpiration
|
|
352
|
+
PT_Wm2 = (delta_hPa * phi_Wm2 + rho_kgm3 * Cp_Jkg * gB_ms * VPD_hPa) / (delta_hPa + gamma_hPa * (1 + SM * gB_by_gS)) # potential transpiration
|
|
353
|
+
# ET PARTITIONING
|
|
354
|
+
LE_soil_Wm2 = rt.clip(SM * PET_Wm2, 0, None)
|
|
355
|
+
LE_canopy_Wm2 = rt.clip(LE_Wm2_new - LE_soil_Wm2, 0, None)
|
|
356
|
+
# change in latent heat flux estimate
|
|
357
|
+
LE_Wm2_change = np.abs(LE_Wm2_old - LE_Wm2_new)
|
|
358
|
+
LE_Wm2_new = rt.where(np.isnan(LE_Wm2_new), LE_Wm2_old, LE_Wm2_new)
|
|
359
|
+
LE_Wm2_old = LE_Wm2_new
|
|
360
|
+
LE_Wm2_max_change = np.nanmax(LE_Wm2_change)
|
|
361
|
+
logger.info(
|
|
362
|
+
f"completed STIC iteration {cl.val(iteration)} / {cl.val(max_iterations)} with max LE change: {cl.val(np.round(LE_Wm2_max_change, 3))} ({t.tocvalue()} seconds)")
|
|
363
|
+
|
|
364
|
+
check_distribution(SM, f"SM_{iteration}")
|
|
365
|
+
check_distribution(G_Wm2, f"G_{iteration}")
|
|
366
|
+
check_distribution(LE_Wm2_new, f"LE_{iteration}")
|
|
367
|
+
|
|
368
|
+
if LE_Wm2_max_change <= LE_convergence_target:
|
|
369
|
+
logger.info(f"max LE change {cl.val(np.round(LE_Wm2_max_change, 3))} within convergence target {cl.val(np.round(LE_convergence_target, 3))} with {cl.val(iteration)} iteration{'s' if iteration > 1 else ''}")
|
|
370
|
+
|
|
371
|
+
iteration += 1
|
|
372
|
+
|
|
373
|
+
iteration -= 1
|
|
374
|
+
results["LE_max_change"] = LE_Wm2_max_change
|
|
375
|
+
results["iteration"] = iteration
|
|
376
|
+
|
|
377
|
+
LE_Wm2 = LE_Wm2_new
|
|
378
|
+
|
|
379
|
+
results["LE_Wm2"] = LE_Wm2
|
|
380
|
+
results["LE_change"] = LE_Wm2_change
|
|
381
|
+
results["LE_soil_Wm2"] = LE_soil_Wm2
|
|
382
|
+
results["LE_canopy_Wm2"] = LE_canopy_Wm2
|
|
383
|
+
results["PT"] = PT_Wm2
|
|
384
|
+
results["PET_Wm2"] = PET_Wm2
|
|
385
|
+
results["G_Wm2"] = G_Wm2
|
|
386
|
+
|
|
387
|
+
if isinstance(geometry, RasterGeometry):
|
|
388
|
+
for name, array in results.items():
|
|
389
|
+
try:
|
|
390
|
+
results[name] = Raster(array.reshape(geometry.shape), geometry=geometry)
|
|
391
|
+
except Exception as e:
|
|
392
|
+
pass
|
|
393
|
+
|
|
394
|
+
results["LE_Wm2"].cmap = ET_COLORMAP
|
|
395
|
+
results["PET_Wm2"].cmap = ET_COLORMAP
|
|
396
|
+
|
|
397
|
+
warnings.resetwarnings()
|
|
398
|
+
|
|
399
|
+
# --- Daily Upscaling (if requested) ---
|
|
400
|
+
if upscale_to_daylight and time_UTC is not None:
|
|
401
|
+
logger.info("started daily ET upscaling (STIC-JPL)")
|
|
402
|
+
t_et = TicToc()
|
|
403
|
+
t_et.tic()
|
|
404
|
+
|
|
405
|
+
# Use new upscaling function from daylight_evapotranspiration
|
|
406
|
+
daylight_results = daylight_ET_from_instantaneous_LE(
|
|
407
|
+
LE_instantaneous_Wm2=LE_Wm2,
|
|
408
|
+
Rn_instantaneous_Wm2=Rn_Wm2,
|
|
409
|
+
G_instantaneous_Wm2=G_Wm2,
|
|
410
|
+
day_of_year=day_of_year,
|
|
411
|
+
time_UTC=time_UTC,
|
|
412
|
+
geometry=geometry
|
|
413
|
+
)
|
|
414
|
+
# Add all returned daylight results to output
|
|
415
|
+
results.update(daylight_results)
|
|
416
|
+
|
|
417
|
+
elapsed_et = t_et.tocvalue()
|
|
418
|
+
logger.info(f"completed daily ET upscaling (elapsed: {elapsed_et:.2f} seconds)")
|
|
419
|
+
|
|
420
|
+
return results
|