RNApolis 0.9.0__py3-none-any.whl → 0.9.1__py3-none-any.whl

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Files changed (7) hide show
  1. rnapolis/annotator.py +7 -2
  2. {rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/METADATA +1 -1
  3. {rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/RECORD +7 -7
  4. {rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/WHEEL +0 -0
  5. {rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/entry_points.txt +0 -0
  6. {rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/licenses/LICENSE +0 -0
  7. {rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/top_level.txt +0 -0
rnapolis/annotator.py CHANGED
@@ -838,10 +838,15 @@ def main():
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  file = handle_input_file(args.input)
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  structure3d = read_3d_structure(file, None)
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  base_interactions = extract_base_interactions(structure3d)
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- structure2d, dot_brackets, mapping = structure3d.extract_secondary_structure(
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- base_interactions, args.find_gaps, args.all_dot_brackets
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+ structure2d, mapping = structure3d.extract_secondary_structure(
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+ base_interactions, args.find_gaps
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  )
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+ if args.all_dot_brackets:
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+ dot_brackets = mapping.all_dot_brackets
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+ else:
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+ dot_brackets = [mapping.dot_bracket]
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+
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  handle_output_arguments(args, structure2d, dot_brackets, mapping, args.input)
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{rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: RNApolis
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- Version: 0.9.0
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+ Version: 0.9.1
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  Summary: A Python library containing RNA-related bioinformatics functions and classes
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  Home-page: https://github.com/tzok/rnapolis-py
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  Author: Tomasz Zok
{rnapolis-0.9.0.dist-info → rnapolis-0.9.1.dist-info}/RECORD RENAMED
@@ -1,6 +1,6 @@
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  rnapolis/adapter.py,sha256=b4fyHq0Dt9VLsxungiI-a4o1t-JqSw3Sd_loFYXGaUk,13371
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  rnapolis/aligner.py,sha256=o7rQyjAZ3n4VXcnSPY3HVB8nLNRkVbl552O3NVh0mfg,3429
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- rnapolis/annotator.py,sha256=4sDNQOvipxa-Axlu7MTvYUFinWh26CW2-wcHrP1Gcuo,30796
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+ rnapolis/annotator.py,sha256=RyBimPb-IIBCEw0qdWPJZUpuWLQaX0swXD-PqI7xSvc,30893
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  rnapolis/clashfinder.py,sha256=AC9_tIx7QIk57sELq_aKfU1u3UMOXbgcccQeGHhMR6c,8517
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  rnapolis/common.py,sha256=HTe-RSZa_9hEIi-j4-1afxdqt7zAD-BpZ7JxRZGX170,32390
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  rnapolis/component_A.csv,sha256=koirS-AwUZwoYGItT8yn3wS6Idvmh2FANfTQcOS_xh8,2897
@@ -21,9 +21,9 @@ rnapolis/tertiary_v2.py,sha256=y7Rh43Jzt9QU6wCa1wAHIcO3BcNQY83PbbWNTmqI8zM,23424
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  rnapolis/transformer.py,sha256=aC0nBmHHJf5TyLvBIV57Jj3tlwpvHbPo347opfAOlQA,3844
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  rnapolis/unifier.py,sha256=2ge7IB9FdRgzSAiVD39U_ciwtdDJ2fGzf8mUIudbrqY,5820
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  rnapolis/util.py,sha256=IdquFO3PV1_KDqodjupzm0Rqvgy0CeSzxGHaGEHYXVU,543
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- rnapolis-0.9.0.dist-info/licenses/LICENSE,sha256=ZGRu12MzCgbYA-Lt8MyBlmjvPZh7xfiD5u5wBx0enq4,1066
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- rnapolis-0.9.0.dist-info/METADATA,sha256=SmNBsfi66LNJ4MGjgR8ovdhocCRlNmYV2eR74vsLLL4,54537
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- rnapolis-0.9.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- rnapolis-0.9.0.dist-info/entry_points.txt,sha256=H00KoN54wU3dFOofAu3H_3PADmZOBTB1hXf5TUU2uzo,438
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- rnapolis-0.9.0.dist-info/top_level.txt,sha256=LcO18koxZcWoJ21KDRRRo_tyIbmXL5z61dPitZpy8yc,9
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- rnapolis-0.9.0.dist-info/RECORD,,
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+ rnapolis-0.9.1.dist-info/licenses/LICENSE,sha256=ZGRu12MzCgbYA-Lt8MyBlmjvPZh7xfiD5u5wBx0enq4,1066
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+ rnapolis-0.9.1.dist-info/METADATA,sha256=KtsCtbTuW0UsW0MX0bwHfAtETo_3PQQZASfQlYmQPYI,54537
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+ rnapolis-0.9.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ rnapolis-0.9.1.dist-info/entry_points.txt,sha256=H00KoN54wU3dFOofAu3H_3PADmZOBTB1hXf5TUU2uzo,438
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+ rnapolis-0.9.1.dist-info/top_level.txt,sha256=LcO18koxZcWoJ21KDRRRo_tyIbmXL5z61dPitZpy8yc,9
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+ rnapolis-0.9.1.dist-info/RECORD,,