RNApolis 0.4.13__py3-none-any.whl → 0.4.14__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {RNApolis-0.4.13.dist-info → RNApolis-0.4.14.dist-info}/METADATA +1 -1
- {RNApolis-0.4.13.dist-info → RNApolis-0.4.14.dist-info}/RECORD +7 -7
- rnapolis/molecule_filter.py +16 -2
- {RNApolis-0.4.13.dist-info → RNApolis-0.4.14.dist-info}/LICENSE +0 -0
- {RNApolis-0.4.13.dist-info → RNApolis-0.4.14.dist-info}/WHEEL +0 -0
- {RNApolis-0.4.13.dist-info → RNApolis-0.4.14.dist-info}/entry_points.txt +0 -0
- {RNApolis-0.4.13.dist-info → RNApolis-0.4.14.dist-info}/top_level.txt +0 -0
@@ -2,16 +2,16 @@ rnapolis/annotator.py,sha256=_hsSX2VHFvIQ47l_EA7lwGFXLiVLbhFPEsOQzBKbjRk,22100
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rnapolis/clashfinder.py,sha256=i95kp0o6OWNqmJDBr-PbsZd7RY2iJtBDr7QqolJSuAQ,8513
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3
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rnapolis/common.py,sha256=LY6Uz96Br8ki_gA8LpfatgtvVbt9jOTkwgagayqTgf8,31251
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4
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rnapolis/metareader.py,sha256=I1-cXc2YNBPwa3zihAnMTjEsAo79tEKzSmWu5yvN1Pk,2071
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5
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-
rnapolis/molecule_filter.py,sha256=
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+
rnapolis/molecule_filter.py,sha256=_7zrF-AH56vXI4vhFtfaU9wr-X7aeOL6DsXbX6_9vPQ,9497
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rnapolis/motif_extractor.py,sha256=Lfn1iEkhkP9eZD3GPEWNAfy00QO7QPCc8wM_XS1ory8,1147
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rnapolis/parser.py,sha256=lHI6LyFbEEPdHOzbged1-Ov0tl6MpSungIPacip0Py0,15838
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rnapolis/rfam_folder.py,sha256=SjiiyML_T1__saruFwSMJEoQ7Y55GIU8ktS8ZUn5-fw,11111
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9
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rnapolis/tertiary.py,sha256=6t9ZB4w33-5n_M3sns1RoFXCOTgVAgGH4WDNG5OG9Kg,23426
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rnapolis/transformer.py,sha256=aC0nBmHHJf5TyLvBIV57Jj3tlwpvHbPo347opfAOlQA,3844
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rnapolis/util.py,sha256=IdquFO3PV1_KDqodjupzm0Rqvgy0CeSzxGHaGEHYXVU,543
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12
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-
RNApolis-0.4.
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RNApolis-0.4.
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RNApolis-0.4.
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RNApolis-0.4.
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RNApolis-0.4.
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RNApolis-0.4.
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12
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RNApolis-0.4.14.dist-info/LICENSE,sha256=ZGRu12MzCgbYA-Lt8MyBlmjvPZh7xfiD5u5wBx0enq4,1066
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13
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+
RNApolis-0.4.14.dist-info/METADATA,sha256=MY6ulJgbaM4qJggOEswGUArvP0IsIMBX-zeoebjqjzk,54323
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14
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RNApolis-0.4.14.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
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15
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RNApolis-0.4.14.dist-info/entry_points.txt,sha256=foN2Pn5e-OzEz0fFmNoX6PnFSZFQntOlY8LbognP5F0,308
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16
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RNApolis-0.4.14.dist-info/top_level.txt,sha256=LcO18koxZcWoJ21KDRRRo_tyIbmXL5z61dPitZpy8yc,9
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17
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+
RNApolis-0.4.14.dist-info/RECORD,,
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rnapolis/molecule_filter.py
CHANGED
@@ -156,7 +156,9 @@ def select_category_by_id(
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def filter_by_poly_types(
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file_content: str,
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file_content: str,
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entity_poly_types: Iterable[str] = ["polyribonucleotide"],
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retain_categories: Iterable[str] = [],
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) -> str:
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adapter = IoAdapterPy()
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@@ -187,13 +189,20 @@ def filter_by_poly_types(
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obj = DataCategory(category, attributes, rows)
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output.append(obj)
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for category in retain_categories:
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obj = data[0].getObj(category)
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if obj:
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output.append(obj)
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with tempfile.NamedTemporaryFile("rt+") as tmp:
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adapter.writeFile(tmp.name, [output])
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tmp.seek(0)
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return tmp.read()
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-
def filter_by_chains(
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def filter_by_chains(
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file_content: str, chains: Iterable[str], retain_categories: Iterable[str] = []
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) -> str:
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"""
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Filter a PDBx/mmCIF file by chain IDs. The function returns a new PDBx/mmCIF file.
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@@ -228,6 +237,11 @@ def filter_by_chains(file_content: str, chains: Iterable[str]) -> str:
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obj = DataCategory(category, attributes, rows)
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output.append(obj)
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for category in retain_categories:
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obj = data[0].getObj(category)
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if obj:
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output.append(obj)
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with tempfile.NamedTemporaryFile("rt+") as tmp:
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adapter.writeFile(tmp.name, [output])
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tmp.seek(0)
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