RNApolis 0.3.11__py3-none-any.whl → 0.3.12__py3-none-any.whl

{RNApolis-0.3.11.dist-info → RNApolis-0.3.12.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: RNApolis
-Version: 0.3.11
+Version: 0.3.12
 Summary: A Python library containing RNA-related bioinformatics functions and classes
 Home-page: https://github.com/tzok/rnapolis-py
 Author: Tomasz Zok

{RNApolis-0.3.11.dist-info → RNApolis-0.3.12.dist-info}/RECORD

@@ -1,17 +1,17 @@
 rnapolis/annotator.py,sha256=bcyqmUSSRyl0ejA3548K4czSElBMX3EpCKAfJ2tYjsw,21476
 rnapolis/clashfinder.py,sha256=jD3s_UovygWi01NUbQNeAeRRFkARTSRraLXUV43UbAA,8514
-rnapolis/common.py,sha256=owupPG9oylz4Ed4DqVYJqWIKpovLJ3EIIApgca6tuhg,27344
+rnapolis/common.py,sha256=QdmAGF8DvG1EHpefumU27LceGm7l9obgWLhL4FELGT4,27381
 rnapolis/metareader.py,sha256=4qtMKRvww2sUStLeV8WVrLEt-ScydHUv4Gxx96tnf-M,1683
 rnapolis/molecule_filter.py,sha256=NhjuqdCRnXgPefWZPeTq77tifmnAzamQtA0ODqPPG9k,6918
 rnapolis/motif_extractor.py,sha256=duHvpi9Ulcny9K60E6VBpz5RpJZw-KdTB4_Ph0iP478,774
-rnapolis/parser.py,sha256=0uNKPnKiv5uaFVFGIzP8xbGLokimBkjs1XdlV0JmKIw,12217
+rnapolis/parser.py,sha256=Cmjt7p8UkiSNhSQDjc6I7BRqtuIIHs23Fp-Glb8Zikw,12216
 rnapolis/rfam_folder.py,sha256=3rgXEJR16uPFy_BOo8qkdClOAOQDVOkidnLE-yoRbeI,11112
 rnapolis/tertiary.py,sha256=iWMPD9c21rjMPpEdBd7mPCQgds65IbOr4_Fy06s0NoU,18957
 rnapolis/transformer.py,sha256=V9nOQvdq4-p7yUWo0vQg0CDQMpmyxz9t4TMSRVEKHnw,1817
 rnapolis/util.py,sha256=IdquFO3PV1_KDqodjupzm0Rqvgy0CeSzxGHaGEHYXVU,543
-RNApolis-0.3.11.dist-info/LICENSE,sha256=ZGRu12MzCgbYA-Lt8MyBlmjvPZh7xfiD5u5wBx0enq4,1066
-RNApolis-0.3.11.dist-info/METADATA,sha256=J0a3wmvQoWPVFgSgvIxMkMFSBCz3KFHB8BHKFNtIdKw,54301
-RNApolis-0.3.11.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-RNApolis-0.3.11.dist-info/entry_points.txt,sha256=foN2Pn5e-OzEz0fFmNoX6PnFSZFQntOlY8LbognP5F0,308
-RNApolis-0.3.11.dist-info/top_level.txt,sha256=LcO18koxZcWoJ21KDRRRo_tyIbmXL5z61dPitZpy8yc,9
-RNApolis-0.3.11.dist-info/RECORD,,
+RNApolis-0.3.12.dist-info/LICENSE,sha256=ZGRu12MzCgbYA-Lt8MyBlmjvPZh7xfiD5u5wBx0enq4,1066
+RNApolis-0.3.12.dist-info/METADATA,sha256=PGjy4PTp1C5K1afBs6ZjeWz4pLJ5iFaiZfUSdgwusDk,54301
+RNApolis-0.3.12.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+RNApolis-0.3.12.dist-info/entry_points.txt,sha256=foN2Pn5e-OzEz0fFmNoX6PnFSZFQntOlY8LbognP5F0,308
+RNApolis-0.3.12.dist-info/top_level.txt,sha256=LcO18koxZcWoJ21KDRRRo_tyIbmXL5z61dPitZpy8yc,9
+RNApolis-0.3.12.dist-info/RECORD,,

rnapolis/common.py

@@ -907,7 +907,8 @@ class MultiStrandDotBracket(DotBracket):
         first = 1
 
         for match in re.finditer(
-            r"((>.*?\n)?([ACGUNacgun]+)\n([.()\[\]{}<>A-Za-z]+))", input
+            r"((>.*?\n)?([ACGTURYSWKMBDHVNacgturyswkmbdhvn.-]+)\n([.()\[\]{}<>A-Za-z]+))",
+            input,
         ):
             sequence = match.group(3)
             structure = match.group(4)

rnapolis/parser.py

@@ -300,7 +300,6 @@ def get_one_letter_name(
         key = (label.chain, label.number)
         if key in sequence:
             return sequence[key]
-
     # RNA
     if len(name) == 1:
         return name