RNApolis 0.3.11__py3-none-any.whl → 0.3.12__py3-none-any.whl

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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: RNApolis
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- Version: 0.3.11
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+ Version: 0.3.12
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  Summary: A Python library containing RNA-related bioinformatics functions and classes
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  Home-page: https://github.com/tzok/rnapolis-py
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  Author: Tomasz Zok
@@ -1,17 +1,17 @@
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  rnapolis/annotator.py,sha256=bcyqmUSSRyl0ejA3548K4czSElBMX3EpCKAfJ2tYjsw,21476
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  rnapolis/clashfinder.py,sha256=jD3s_UovygWi01NUbQNeAeRRFkARTSRraLXUV43UbAA,8514
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- rnapolis/common.py,sha256=owupPG9oylz4Ed4DqVYJqWIKpovLJ3EIIApgca6tuhg,27344
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+ rnapolis/common.py,sha256=QdmAGF8DvG1EHpefumU27LceGm7l9obgWLhL4FELGT4,27381
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  rnapolis/metareader.py,sha256=4qtMKRvww2sUStLeV8WVrLEt-ScydHUv4Gxx96tnf-M,1683
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  rnapolis/molecule_filter.py,sha256=NhjuqdCRnXgPefWZPeTq77tifmnAzamQtA0ODqPPG9k,6918
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  rnapolis/motif_extractor.py,sha256=duHvpi9Ulcny9K60E6VBpz5RpJZw-KdTB4_Ph0iP478,774
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- rnapolis/parser.py,sha256=0uNKPnKiv5uaFVFGIzP8xbGLokimBkjs1XdlV0JmKIw,12217
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+ rnapolis/parser.py,sha256=Cmjt7p8UkiSNhSQDjc6I7BRqtuIIHs23Fp-Glb8Zikw,12216
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  rnapolis/rfam_folder.py,sha256=3rgXEJR16uPFy_BOo8qkdClOAOQDVOkidnLE-yoRbeI,11112
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  rnapolis/tertiary.py,sha256=iWMPD9c21rjMPpEdBd7mPCQgds65IbOr4_Fy06s0NoU,18957
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  rnapolis/transformer.py,sha256=V9nOQvdq4-p7yUWo0vQg0CDQMpmyxz9t4TMSRVEKHnw,1817
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  rnapolis/util.py,sha256=IdquFO3PV1_KDqodjupzm0Rqvgy0CeSzxGHaGEHYXVU,543
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- RNApolis-0.3.11.dist-info/LICENSE,sha256=ZGRu12MzCgbYA-Lt8MyBlmjvPZh7xfiD5u5wBx0enq4,1066
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- RNApolis-0.3.11.dist-info/METADATA,sha256=J0a3wmvQoWPVFgSgvIxMkMFSBCz3KFHB8BHKFNtIdKw,54301
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- RNApolis-0.3.11.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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- RNApolis-0.3.11.dist-info/entry_points.txt,sha256=foN2Pn5e-OzEz0fFmNoX6PnFSZFQntOlY8LbognP5F0,308
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- RNApolis-0.3.11.dist-info/top_level.txt,sha256=LcO18koxZcWoJ21KDRRRo_tyIbmXL5z61dPitZpy8yc,9
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- RNApolis-0.3.11.dist-info/RECORD,,
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+ RNApolis-0.3.12.dist-info/LICENSE,sha256=ZGRu12MzCgbYA-Lt8MyBlmjvPZh7xfiD5u5wBx0enq4,1066
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+ RNApolis-0.3.12.dist-info/METADATA,sha256=PGjy4PTp1C5K1afBs6ZjeWz4pLJ5iFaiZfUSdgwusDk,54301
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+ RNApolis-0.3.12.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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+ RNApolis-0.3.12.dist-info/entry_points.txt,sha256=foN2Pn5e-OzEz0fFmNoX6PnFSZFQntOlY8LbognP5F0,308
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+ RNApolis-0.3.12.dist-info/top_level.txt,sha256=LcO18koxZcWoJ21KDRRRo_tyIbmXL5z61dPitZpy8yc,9
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+ RNApolis-0.3.12.dist-info/RECORD,,
rnapolis/common.py CHANGED
@@ -907,7 +907,8 @@ class MultiStrandDotBracket(DotBracket):
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  first = 1
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  for match in re.finditer(
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- r"((>.*?\n)?([ACGUNacgun]+)\n([.()\[\]{}<>A-Za-z]+))", input
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+ r"((>.*?\n)?([ACGTURYSWKMBDHVNacgturyswkmbdhvn.-]+)\n([.()\[\]{}<>A-Za-z]+))",
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+ input,
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  ):
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  sequence = match.group(3)
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  structure = match.group(4)
rnapolis/parser.py CHANGED
@@ -300,7 +300,6 @@ def get_one_letter_name(
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  key = (label.chain, label.number)
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  if key in sequence:
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  return sequence[key]
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-
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  # RNA
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  if len(name) == 1:
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  return name