RDG-Networks 0.3.4__py3-none-any.whl → 0.3.6__py3-none-any.whl

{RDG_Networks-0.3.4.dist-info → RDG_Networks-0.3.6.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: RDG-Networks
-Version: 0.3.4
+Version: 0.3.6
 Summary: Most of the code from the RDG Networks project
 Home-page: https://github.com/NiekMooij/RDG_networks
 Author: Niek Mooij

RDG_Networks-0.3.6.dist-info/RECORD

@@ -0,0 +1,22 @@
+RDG_networks/Classes.py,sha256=_9X3JPHFAYYlaC8IZ_H9__sfz99G5l9UfPl65lL60_4,7977
+RDG_networks/__init__.py,sha256=SmpD26lMaZ3wPz2Hs2Z-24AJiEU5DbNldhQt1fZxI0U,1607
+RDG_networks/draw_segments.py,sha256=U53N5GXmQHWKdM1Q1faP_EGKjc6enOu2mcsunzSFpP0,984
+RDG_networks/generate_line_network.py,sha256=lJ4rhObim3WcEQoebomewRQKWNJC5phFyFYRW7qjXIg,1127
+RDG_networks/generate_line_segments.py,sha256=QV8_k7q6TD5c7Hcb2Ms_apEdWYw4XdLr7rdJgh49v4Q,9004
+RDG_networks/generate_line_segments_dynamic.py,sha256=GoIhGXYbcvjqR5BJCnkvAGp8QBpzsE1ZSbl2k9XAOGI,7531
+RDG_networks/generate_line_segments_static.py,sha256=7KvHZi3krv-tAGydJR_gbMMmHKZ5azzrKcQe3fuWzCE,9265
+RDG_networks/get_intersection_segments.py,sha256=mXB5qCy1oOps4Vu1mX6flW6v_4Xxc71YK41yOWjJX8o,2797
+RDG_networks/sample_in_polygon.py,sha256=qpPpW-Da1vK8ZkVWMJ0zBsE8IgyMB619gCdybSkzKSQ,1605
+RDG_networks/save_to_stl.py,sha256=xHwuoG39cbemggoIjT44DlsMlhjlV3uxTWo6gcHEePA,3414
+RDG_networks/thickness/Classes.py,sha256=gVe_q5Rh_1DBiJoZ8H0FyJ4xG-IAcespjUpUirxFfAA,8125
+RDG_networks/thickness/__init__.py,sha256=87hNJsP1c-4y5QqZVM0bDcVn2cWoNd23Da3_Dvy7Fno,745
+RDG_networks/thickness/generate_line_segments_thickness.py,sha256=4SJn2_ScMKNSbHWFCSQCInCWRTo08AUiobAFxasFEKI,29190
+RDG_networks/thickness/generate_line_segments_thickness_orientation backup.py,sha256=5gcStrs4SNLp17tFb9XsN4TLWpOaeu0cHteEedISs5E,8204
+RDG_networks/thickness/generate_line_segments_thickness_orientation.py,sha256=oTEwQkXRBuoHvEdIGU30p21e2QHW1UlmApzRO1s5c64,16821
+RDG_networks/thickness/sample_in_polygon.py,sha256=nJ-yqfoCCGfC6_EpGL3L1t1LOYdqWZd-7v5bxy6th34,1849
+RDG_Networks-0.3.6.dist-info/LICENSE.txt,sha256=BHUkX2GsdTr30sKmVZ1MLGR1njnx17EX_oUuuSVZZPE,598
+RDG_Networks-0.3.6.dist-info/METADATA,sha256=wGZdZ1ZiKAB4gHxXv3WosChSNoaZ2FFKjbfAIog92Dw,2422
+RDG_Networks-0.3.6.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
+RDG_Networks-0.3.6.dist-info/entry_points.txt,sha256=g8LC0VSpouLfaeL08Wqn31Pm3K74h4DfkD39C9Fr120,938
+RDG_Networks-0.3.6.dist-info/top_level.txt,sha256=4gUUYafD5Al9V8ZSiViVGYHpRMMCsCBcGgCNodk9Syg,13
+RDG_Networks-0.3.6.dist-info/RECORD,,

{RDG_Networks-0.3.4.dist-info → RDG_Networks-0.3.6.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (74.1.2)
+Generator: setuptools (75.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

RDG_Networks-0.3.6.dist-info/entry_points.txt

@@ -0,0 +1,14 @@
+[console_scripts]
+clip_network = RDG_networks.thickness.clip_network:main
+draw_segments = RDG_networks.draw_segments:main
+generate_line_network = RDG_networks.generate_line_network:main
+generate_line_segments = RDG_networks.generate_line_segments:main
+generate_line_segments_dynamic = RDG_networks.generate_line_segments_dynamic:main
+generate_line_segments_static = RDG_networks.generate_line_segments_static:main
+generate_line_segments_thickness = RDG_networks.thickness.generate_line_segments_thickness:main
+generate_line_segments_thickness_orientation = RDG_networks.thickness.generate_line_segments_dynamic_orientation:main
+get_alignment_mean = RDG_networks.thickness.get_alignment_mean:main
+get_intersection_segments = RDG_networks.get_intersection_segments:main
+rotate_network = RDG_networks.thickness.rotate_network:main
+save_to_stl = RDG_networks.save_to_stl:main
+translate_network = RDG_networks.thickness.translate_network:main

RDG_networks/__init__.py

@@ -7,17 +7,29 @@ from .get_intersection_segments import get_intersection_segments
 from .generate_line_segments_dynamic import generate_line_segments_dynamic
 from .generate_line_segments_static import generate_line_segments_static
 from .draw_segments import draw_segments
-from .thickness.generate_line_segments_dynamic_thickness import generate_line_segments_dynamic_thickness
+from .thickness.generate_line_segments_thickness import generate_line_segments_thickness
+from .thickness.generate_line_segments_thickness_orientation import generate_line_segments_thickness_orientation
+from .thickness.generate_line_segments_thickness_orientation import translate_network
+from .thickness.generate_line_segments_thickness_orientation import clip_network
+from .thickness.generate_line_segments_thickness_orientation import rotate_network
+from .thickness.generate_line_segments_thickness_orientation import get_alignment_mean
+from .save_to_stl import save_to_stl
 
 __all__ = ['generate_line_segments', 
-           'generate_line_network',
-           'get_intersection_segments',
+           'generate_line_segments_thickness',
+           'generate_line_segments_thickness_orientation',
+           'translate_network',
+           'clip_network',
+           'rotate_network',
+           'get_alignment_mean',
            'generate_line_segments_dynamic',
            'generate_line_segments_static',
-           'generate_line_segments_dynamic_thickness',
+           'generate_line_network',
+           'get_intersection_segments',
            'draw_segments', 
            'sample_in_polygon',
            'Line', 
            'LineSegment', 
-           'Polygon'
+           'Polygon',
+           'save_to_stl'
            ]

RDG_networks/save_to_stl.py

@@ -0,0 +1,105 @@
+import numpy as np
+import json
+import pandas as pd
+import networkx as nx
+import random
+import matplotlib.pyplot as plt
+import numpy as np
+import math
+import pickle
+
+import numpy as np
+from stl import mesh
+from shapely.geometry import Polygon
+from shapely.ops import unary_union
+
+# Function to convert 2D polygon to 3D mesh by adding thickness
+def polygon_to_3d_mesh(polygon, thickness=1.0):
+    # Get the exterior coordinates of the 2D polygon
+    exterior_coords = list(polygon.exterior.coords)
+    
+    # Create vertices for the top and bottom of the 3D shape
+    top_vertices = [(x, y, thickness) for x, y in exterior_coords]
+    bottom_vertices = [(x, y, 0) for x, y in exterior_coords]
+    
+    # Vertices array: two sets of vertices (top and bottom)
+    vertices = np.array(top_vertices + bottom_vertices)
+    n = len(exterior_coords)
+    
+    # Create faces (triangles) connecting the top and bottom surfaces
+    faces = []
+    
+    # Create side walls
+    for i in range(n):
+        next_i = (i + 1) % n
+        faces.append([i, next_i, n + next_i])   # Top to bottom
+        faces.append([i, n + next_i, n + i])    # Bottom to top
+    
+    # Create top and bottom surfaces
+    for i in range(1, n - 1):
+        faces.append([0, i+1, i ])            # Top face
+        faces.append([n, n + i, n + i+1])     # Bottom face
+
+    # Convert faces to NumPy array
+    faces = np.array(faces)
+    
+    # Create mesh object
+    polygon_mesh = mesh.Mesh(np.zeros(faces.shape[0], dtype=mesh.Mesh.dtype))
+    
+    for i, face in enumerate(faces):
+        for j in range(3):
+            polygon_mesh.vectors[i][j] = vertices[face[j], :]
+    
+    return polygon_mesh
+
+def merge_3d_meshes(mesh_list):
+    # List to hold the vertices and faces of the merged mesh
+    vertices = []
+    faces = []
+    
+    # Variable to track the current offset for the face indices
+    vertex_offset = 0
+    
+    # Iterate over each mesh and extract its vertices and faces
+    for m in mesh_list:
+        # Extract the vertices and faces of the current mesh
+        current_vertices = m.vectors.reshape(-1, 3)  # Each face is a set of 3 vertices
+        current_faces = np.arange(len(current_vertices)).reshape(-1, 3)
+        
+        # Append the vertices, and adjust the face indices by the current offset
+        vertices.append(current_vertices)
+        faces.append(current_faces + vertex_offset)
+        
+        # Update the vertex offset for the next mesh
+        vertex_offset += len(current_vertices)
+    
+    # Concatenate all the vertices and faces into a single array
+    vertices = np.vstack(vertices)
+    faces = np.vstack(faces)
+    
+    # Create a new merged mesh
+    merged_mesh = mesh.Mesh(np.zeros(faces.shape[0], dtype=mesh.Mesh.dtype))
+    
+    # Fill the new mesh with the vertices and faces
+    for i, face in enumerate(faces):
+        for j in range(3):
+            merged_mesh.vectors[i][j] = vertices[face[j], :]
+    
+    return merged_mesh
+
+def save_to_stl(seg_thick_dict, thickness, name):
+    mesh_list = []
+    for k,v in seg_thick_dict.items():
+        p = [] 
+        for j in v.vertices:
+            try: 
+                p.append((float(j[0]), float(j[1])))
+            except:
+                None
+        
+        mesh_list.append(polygon_to_3d_mesh(Polygon(p), thickness=thickness))
+
+    merged_mesh = merge_3d_meshes(mesh_list)
+
+    # Save the merged mesh as an STL file   
+    merged_mesh.save(name)

RDG_networks/thickness/Classes.py

@@ -103,7 +103,7 @@ class Polygon:
             vertices (List[Tuple[float, float]]): A list of (x, y) coordinates representing the vertices of the polygon.
         """
         self.vertices = vertices
-        self.middle_line = middle_segment
+        self.middle_segment = middle_segment
 
     def area(self) -> float:
         """
@@ -151,7 +151,8 @@ class Polygon:
             dy = point[1] - reference_point[1]
             return np.arctan2(dy, dx)
 
-        reference_point = min(self.vertices, key=lambda point: point[1])
+        # reference_point = min(self.vertices, key=lambda point: point[1])
+        reference_point = np.mean(self.vertices, axis=0)
         return sorted(self.vertices, key=lambda point: polar_angle(point, reference_point))
 
     def draw(self, ax: axes.Axes, color='purple', alpha=0.8):

RDG_networks/thickness/__init__.py

@@ -1,7 +1,17 @@
 # __init__.py
 
-from .generate_line_segments_dynamic_thickness import generate_line_segments_dynamic_thickness
+from .generate_line_segments_thickness import generate_line_segments_thickness
+from .generate_line_segments_thickness_orientation import generate_line_segments_thickness_orientation
+from .generate_line_segments_thickness_orientation import translate_network
+from .generate_line_segments_thickness_orientation import clip_network
+from .generate_line_segments_thickness_orientation import rotate_network
+from .generate_line_segments_thickness_orientation import get_alignment_mean
 
 __all__ = [
-           'generate_line_segments_dynamic_thickness',
+           'generate_line_segments_thickness',
+           'generate_line_segments_thickness_orientation',
+           'translate_network',
+           'clip_network',
+           'rotate_network',
+           'get_alignment_mean'
            ]

RDG_networks/thickness/{generate_line_segments_dynamic_thickness.py → generate_line_segments_thickness.py}

@@ -2,17 +2,19 @@ import math
 import numpy as np
 import random
 from typing import List, Dict, Tuple, Union, Optional
+from shapely.geometry import Polygon as Polygon_Shapely, LineString
 
 from .Classes import Line, LineSegment, Polygon
 from .sample_in_polygon import sample_in_polygon, is_inside_polygon
 
-def doLinesIntersect(line1: Line, line2: Line) -> Tuple[bool, Union[Tuple[float, float], None]]:
+def doLinesIntersect(line1: Line, line2: Line, box_size = 1) -> Tuple[bool, Union[Tuple[float, float], None]]:
     """
     Check if two lines intersect and return the intersection point.
 
     Args:
     - line1 (Line): The first line segment.
     - line2 (Line): The second line segment.
+    - box_size (float): The size of the bounding box. Defaults to 1.
 
     Returns:
     - intersect (bool): True if the lines intersect, False otherwise.
@@ -35,14 +37,16 @@ def doLinesIntersect(line1: Line, line2: Line) -> Tuple[bool, Union[Tuple[float,
     intersect_x = x1 + v1 * t1
     intersect_y = y2 + w2 * t2
 
-    if -1e-6 < intersect_x < 1 + 1e-6 and -1e-6 < intersect_y < 1 + 1e-6:
+
+    if -1e-6 < intersect_x < box_size + 1e-6 and -1e-6 < intersect_y < box_size + 1e-6:
         return True, (intersect_x, intersect_y)
     else:
         return False, (None, None)
     
 def doSegmentsIntersect(
     segment1: LineSegment, 
-    segment2: LineSegment
+    segment2: LineSegment,
+    box_size = 1
 ) -> Tuple[bool, Tuple[Optional[float], Optional[float]]]:
     """
     Determines if two line segments intersect and returns the intersection point if they do.
@@ -63,7 +67,7 @@ def doSegmentsIntersect(
     line2 = Line(location=segment2.start, direction=np.array(segment2.end) - np.array(segment2.start))
     
     # Check if the infinite extensions of the two lines intersect
-    intersect, (intersect_x, intersect_y) = doLinesIntersect(line1, line2)
+    intersect, (intersect_x, intersect_y) = doLinesIntersect(line1, line2, box_size)
     
     # If no intersection, return False
     if not intersect:
@@ -138,6 +142,8 @@ def pick_item_with_probability(
 def get_location_and_direction(
     polygon_arr: Dict[str, Dict[str, object]], 
     thickness: float, 
+    nucleation_point: Tuple[float, float] = None,
+    min_distance: float = 0,
     max_attempts: int = 1000, 
     angles: Union[str, List[float]] = 'uniform'
 ) -> Union[Tuple[str, Dict[str, object], Tuple[float, float], np.ndarray, np.ndarray], bool]:
@@ -155,6 +161,10 @@ def get_location_and_direction(
             The maximum number of attempts to find a valid location and direction. Defaults to 1000.
         angles (Union[str, List[float]], optional): 
             A string ('uniform' for random directions) or a list of angles (in radians) to choose the direction from. Defaults to 'uniform'.
+        nucleation_point (Tuple[float, float], optional): 
+            predified nucleation point for the segment. Defaults to None.
+        min_distance (float, optional): 
+            the minimum distance between two lines. Defaults to 0.
 
     Returns:
         Union[Tuple[str, Dict[str, object], Tuple[float, float], np.ndarray, np.ndarray], bool]:
@@ -164,17 +174,20 @@ def get_location_and_direction(
                 - The new location as a tuple of floats (`Tuple[float, float]`).
                 - The direction vector as a numpy array (`np.ndarray`).
                 - The perpendicular vector to the direction as a numpy array (`np.ndarray`).
+                - The nucleation point [x,y] of the segment
+                - The angle of the segment.
             - Returns `False` if no valid location and direction are found after the maximum attempts.
     """
     
     # Generate a new direction based on the angles parameter
     if angles == 'uniform':
-        direction = np.array([random.uniform(-1, 1), random.uniform(-1, 1)])
+        angle_new = random.uniform(-np.pi, np.pi)
+        direction = (np.cos(angle_new), np.sin(angle_new))
         direction = direction / np.linalg.norm(direction)  # Normalize the direction vector
     else:
-        directions = [ (np.cos(angle), np.sin(angle)) for angle in angles ]
-        direction = random.choice(directions)
-        direction = np.array(direction) / np.linalg.norm(direction)  # Normalize the chosen direction
+        angle_new = random.choice(angles)
+        direction = (np.cos(angle_new), np.sin(angle_new))
+        direction = np.array(direction) / np.linalg.norm(direction)
     
     # Try to find a valid location and direction up to max_attempts
     attempt = 0
@@ -182,7 +195,11 @@ def get_location_and_direction(
         polygon_id, polygon = pick_item_with_probability(polygon_arr)
         
         # Sample a location within the polygon
-        location_new = sample_in_polygon(polygon['vertices'])
+        #check if nucleation point is given
+        if nucleation_point is not None:
+            location_new = nucleation_point
+        else:
+            location_new = sample_in_polygon(polygon['vertices'])
         
         # Compute the perpendicular vector to the direction
         perpendicular = np.array([direction[1], -direction[0]])
@@ -193,12 +210,12 @@ def get_location_and_direction(
             perpendicular = -perpendicular
         
         # Compute the positions for the segment with thickness, shifted by half-thickness along the perpendicular direction
-        p1 = np.array(location_new) + thickness / 2 * perpendicular
-        p2 = np.array(location_new) - thickness / 2 * perpendicular
+        p1 = np.array(location_new) + (thickness/2 + min_distance) * perpendicular 
+        p2 = np.array(location_new) - (thickness/2 + min_distance) * perpendicular
         
         # Check if both endpoints of the segment are inside the polygon
         if is_inside_polygon(polygon['vertices'], p1) and is_inside_polygon(polygon['vertices'], p2):
-            return polygon_id, polygon, location_new, direction, perpendicular
+            return polygon_id, polygon, location_new, direction, perpendicular, angle_new
         
         attempt += 1
     
@@ -259,8 +276,9 @@ def get_new_segment(
     line_segments_to_check: List[LineSegment],
     location: Tuple[float, float], 
     direction: Tuple[float, float], 
-    id: Optional[int] = None
-) -> 'LineSegment':
+    id: Optional[int] = None,
+    box_size: float = 1
+) -> LineSegment:
     """
     Creates a new line segment by extending a given location in a specified direction and 
     determines its neighbors by checking intersections with other line segments.
@@ -270,18 +288,20 @@ def get_new_segment(
         location (Tuple[float, float]): The starting point (x, y) for the new line segment.
         direction (Tuple[float, float]): The direction vector in which to extend the line segment.
         id (Optional[int]): Optional ID for the new line segment. If not provided, defaults to None.
+        box_size(optional[Int]]): The size of the box. Defaults to 1.
 
     Returns:
         LineSegment: A new line segment object with its neighbors based on intersections.
     """
     
     # Create a temporary line segment extending from the location in both directions
-    s_temp = LineSegment(start=np.array(location) - 10 * np.array(direction), end=np.array(location) + 10 * np.array(direction))
-    intersection_points: List[Dict[str, Tuple[float, float]]] = []
+    s_temp = LineSegment(start=np.array(location) - 10*np.sqrt(2)*box_size * np.array(direction), end=np.array(location) + 10*np.sqrt(2)*box_size * np.array(direction))
+
+    intersection_points = []
 
     # Check for intersections with existing line segments
     for segment in line_segments_to_check:
-        intersect, (intersect_x, intersect_y) = doSegmentsIntersect(s_temp, segment)
+        intersect, (intersect_x, intersect_y) = doSegmentsIntersect(s_temp, segment, box_size)
 
         if intersect:
             segment_length = math.sqrt(
@@ -318,10 +338,10 @@ def get_new_segment(
     return segment_new
     
 def update_data(
-    segments_dict: Dict[int, 'LineSegment'], 
+    segments_dict: Dict[int, LineSegment], 
     polygon_arr: Dict[str, Dict[str, object]], 
     polygon_id: str, 
-    segment_thickness_dict: Dict[int, 'Polygon'], 
+    segment_thickness_dict: Dict[int, Polygon], 
     vertices0: List[Tuple[float, float]], 
     vertices1: List[Tuple[float, float]], 
     vertices2: List[Tuple[float, float]], 
@@ -431,9 +451,13 @@ def add_line_segment(
     segments_dict: Dict[int, LineSegment], 
     polygon_arr: Dict[str, Dict[str, object]], 
     segment_thickness_dict: Dict[int, Polygon], 
-    thickness: float = 0, 
-    angles: str = 'uniform'
-) -> Union[Tuple[Dict[int, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon]], bool]:
+    angles: str = 'uniform',
+    thickness: float = 0,
+    nucleation_point: Tuple[float, float] = None,
+    min_distance: float = 0,
+    box_size: float = 1,
+    max_attempts: int = 1000
+) -> Union[Tuple[Dict[int, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon], List[float], float], bool]:
     """
     Adds a new line segment to the segments and polygon data structures, with a given thickness and angle distribution.
 
@@ -443,26 +467,31 @@ def add_line_segment(
         segment_thickness_dict (Dict[int, Polygon]): A dictionary storing the thickness information mapped to polygons.
         thickness (float): The thickness of the new segment to be added. Defaults to 0.
         angles (str): The angle distribution method. Defaults to 'uniform'.
+        nucleation_point (Tuple[float, float]): A predefined nucleation point for the new segment. Defaults to None.
+        min_distance (float): The minimum distance between two lines. Defaults to 0.
+        box_size (float): The size of the box. Defaults to 1.
+        max_attempts (int): The maximum number of attempts to find a valid location and direction. Defaults to 1000.
 
     Returns:
-        Union[Tuple[Dict[int, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon]], bool]:
+        Union[Tuple[Dict[int, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon]], List[float], float, bool]:
             - A tuple containing the updated segments dictionary, polygon dictionary, and thickness dictionary, 
               or False if no valid location for the new segment is found.
+            -nucleation point in a list [x,y] and the angle of the segment in radians.
     """
     
     # Get a valid location and direction, or return False if none is found
-    loc = get_location_and_direction(polygon_arr, thickness, max_attempts=1000, angles=angles)
+    loc = get_location_and_direction(polygon_arr, thickness, nucleation_point, min_distance, max_attempts=max_attempts, angles=angles)
     if loc:
-        polygon_id, polygon, location_new, direction_new, perpendicular = loc
+        polygon_id, polygon, location_new, direction_new, perpendicular, angle_new = loc
     else:
         print('No valid location found')
         return False
         
     # Get the borders of the new segment with the given thickness
     line_segments_to_check = [segments_dict[segment] for segment in polygon['faces']]
-    middle_segment = get_new_segment(line_segments_to_check, location=location_new, direction=direction_new)
-    s1 = get_new_segment(line_segments_to_check, location=np.array(location_new) + thickness * perpendicular / 2, direction=direction_new)
-    s2 = get_new_segment(line_segments_to_check, location=np.array(location_new) - thickness * perpendicular / 2, direction=direction_new)
+    middle_segment = get_new_segment(line_segments_to_check, location=location_new, direction=direction_new, box_size=box_size)
+    s1 = get_new_segment(line_segments_to_check, location=np.array(location_new) + thickness * perpendicular / 2, direction=direction_new,box_size=box_size)
+    s2 = get_new_segment(line_segments_to_check, location=np.array(location_new) - thickness * perpendicular / 2, direction=direction_new, box_size=box_size)
     
     # Extract neighbor information and segment vertices
     neighbor1_1, neighbor1_2 = list(s1.neighbors.keys())
@@ -515,13 +544,16 @@ def add_line_segment(
     # Associate the middle segment with the newly created thickness entry
     segment_thickness_dict[list(segment_thickness_dict.keys())[-1]].middle_segment = middle_segment
     
-    return segments_dict, polygon_arr, segment_thickness_dict
+    return segments_dict, polygon_arr, segment_thickness_dict, location_new, angle_new
 
-def generate_line_segments_dynamic_thickness(
+def generate_line_segments_thickness(
     size: int, 
     thickness_arr: List[float], 
-    angles: str = 'uniform'
-) -> Tuple[Dict[str, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon]]:
+    angles: str = 'uniform',
+    config: List[List[float]] = None, 
+    epsilon: float = 0,
+    box_size: float = 1 
+    ) -> Tuple[Dict[str, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon], np.ndarray]:
     """
     Generates a specified number of line segments and updates the polygon and segment thickness dictionaries.
 
@@ -529,26 +561,31 @@ def generate_line_segments_dynamic_thickness(
         size (int): The number of line segments to generate.
         thickness_arr (List[float]): A list containing the thickness values for each segment to be generated.
         angles (str): The angle distribution method for generating segments. Defaults to 'uniform'.
+                List[float]: list of angles in radians.
+        config (List[List[float]]): A list of configurations for the nucleation points and angles.
+        epsilon (float): the minimum distance between two line.
+        box_size (float): the size of the box.
 
     Returns:
         Tuple[Dict[str, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon]]:
             - Updated dictionary of line segments.
             - Updated dictionary of polygons.
             - Updated dictionary of segment thicknesses.
+            - Array of the nucleation points and angles [x,y,theta].
     """
     
     # Initialize border segments for a square and its polygon representation
     borders = [
-        LineSegment((1, 0), (0, 0), id='b1', neighbors_initial={'b2': (0, 0), 'b4': (1, 0)}, neighbors={'b2': (0, 0), 'b4': (1, 0)}),
-        LineSegment((0, 1), (0, 0), id='b2', neighbors_initial={'b1': (0, 0), 'b3': (0, 1)}, neighbors={'b1': (0, 0), 'b3': (0, 1)}),
-        LineSegment((0, 1), (1, 1), id='b3', neighbors_initial={'b2': (0, 1), 'b4': (1, 1)}, neighbors={'b2': (0, 1), 'b4': (1, 1)}),
-        LineSegment((1, 1), (1, 0), id='b4', neighbors_initial={'b1': (1, 0), 'b3': (1, 1)}, neighbors={'b1': (1, 0), 'b3': (1, 1)})
+        LineSegment((box_size, 0), (0, 0), id='b1', neighbors_initial={'b2': (0, 0), 'b4': (box_size, 0)}, neighbors={'b2': (0, 0), 'b4': (box_size, 0)}),
+        LineSegment((0, box_size), (0, 0), id='b2', neighbors_initial={'b1': (0, 0), 'b3': (0, box_size)}, neighbors={'b1': (0, 0), 'b3': (0, box_size)}),
+        LineSegment((0, box_size), (box_size, box_size), id='b3', neighbors_initial={'b2': (0, box_size), 'b4': (box_size, box_size)}, neighbors={'b2': (0, box_size), 'b4': (box_size, box_size)}),
+        LineSegment((box_size, box_size), (box_size, 0), id='b4', neighbors_initial={'b1': (box_size, 0), 'b3': (box_size, box_size)}, neighbors={'b1': (box_size, 0), 'b3': (box_size, box_size)})
     ]
     
     polygon_arr = {
         'p1': {
-            'vertices': [(0, 0), (0, 1), (1, 1), (1, 0)], 
-            'area': 1, 
+            'vertices': [(0, 0), (0, box_size), (box_size, box_size), (box_size, 0)], 
+            'area': box_size**2, 
             'faces': ['b1', 'b2', 'b3', 'b4']
         }
     }
@@ -556,18 +593,50 @@ def generate_line_segments_dynamic_thickness(
     segments = borders
     segments_dict = {segment.id: segment for segment in segments}
     segment_thickness_dict = {}
+    generated_config = []
+
+    if config is not None and size > len(config):
+        print("The size of the configuration is smaller than the size of the segments. Generated a network of the same size as the configuration.")
+        size = len(config)
 
-    # Generate new line segments based on the given size and thickness array
+    jammed = False
     for i in range(size):
-        output = add_line_segment(segments_dict, polygon_arr, segment_thickness_dict, thickness=thickness_arr[i], angles=angles)
+        if config:
+            nucleation_point = config[i]['location']
+            angles = [config[i]['angle']]
+        else:
+            nucleation_point = None
+            if angles != 'uniform':
+                angles=[angles[i]]
+
+        output = add_line_segment(segments_dict, 
+                                    polygon_arr, 
+                                    segment_thickness_dict, 
+                                    thickness=thickness_arr[i], 
+                                    min_distance = epsilon,
+                                    nucleation_point = nucleation_point, 
+                                    angles=angles,
+                                    box_size=box_size)
         if output:
-            segments_dict, polygon_arr, segment_thickness_dict = output
-        else: 
-            print(f"Stopped at iteration {i}, could not find a valid segment position.")
-            break
-        
+            segments_dict, polygon_arr, segment_thickness_dict, location, angle = output
+            generated_config.append({ 'location': location, 'angle': angle, 'thickness': thickness_arr[i] })
+
+        else:
+            if config:
+                print('Configuration not possible. Point is skipped.')
+            else:    
+                print(f"Stopped at iteration {len(segment_thickness_dict)}, could not find a valid segment position.")
+                jammed = True
+                break
+            
         # Uncomment the following line if you want progress feedback
         percentage = np.round(i / size * 100, 3)
         print(f'generate_segments: {percentage}% done', end='\r')
     
-    return segments_dict, polygon_arr, segment_thickness_dict
+    data_dict = {'segments_dict': segments_dict, 
+                 'polygon_arr': polygon_arr, 
+                 'segment_thickness_dict': segment_thickness_dict, 
+                 'jammed': jammed,
+                 'generated_config': generated_config}
+    
+    return data_dict

RDG_networks/thickness/generate_line_segments_thickness_orientation backup.py

@@ -0,0 +1,202 @@
+import numpy as np
+from typing import List, Dict, Tuple, Union, Optional
+from shapely.geometry import Polygon as Polygon_Shapely, LineString
+from shapely.geometry import Point
+import matplotlib.pyplot as plt
+from concurrent.futures import ProcessPoolExecutor
+
+from .Classes import Line, LineSegment, Polygon
+from .generate_line_segments_thickness import generate_line_segments_thickness
+
+def rotate(point, center, rotation_matrix):
+    """
+    Rotates a point around the center using the given rotation matrix.
+    point: numpy array representing the point to rotate
+    center: numpy array representing the center of rotation
+    rotation_matrix: 2x2 numpy array representing the rotation matrix
+    """
+    translated_point = point - center
+    rotated_point = np.dot(rotation_matrix, translated_point)
+    final_point = rotated_point + center
+
+    return final_point
+
+def unit_vector(v):
+    """ Returns the unit vector of the vector. """
+    return v / np.linalg.norm(v)
+
+def angle_between(v1, v2):
+    """ Returns the angle in radians between vectors 'v1' and 'v2'."""
+    v1_u = unit_vector(v1)
+    v2_u = unit_vector(v2)
+    return np.arccos(np.clip(np.dot(v1_u, v2_u), -1.0, 1.0))
+
+def get_alignment_mean(line_vector_arr, director):
+    """Get the mean alignment."""
+    S_all = []
+    for item in line_vector_arr:
+        line_vector = item['line_vector']
+        area = item['area']
+        P2 = 0.5*(3*(np.cos(angle_between(line_vector, director)))**2-1)
+        S_all.append(P2*area)
+
+    return float(np.mean(S_all))
+
+def compute_alignment_for_angle(
+    angle: float, 
+    segment_thickness_dict: dict, 
+    director: np.ndarray, 
+    box_size: float
+) -> tuple[float, float]:
+    """Compute the alignment for a given angle."""
+    rotation_matrix = np.array([[np.cos(angle), -np.sin(angle)], [np.sin(angle), np.cos(angle)]])
+    center = np.array([box_size / 2, box_size / 2])
+    line_vectors = [
+        {'line_vector': np.diff(rotate(np.array([seg.middle_segment.start, seg.middle_segment.end]), center, rotation_matrix), axis=0)[0], 
+         'area': seg.area()}
+        for seg in segment_thickness_dict.values()
+    ]
+
+    alignment = get_alignment_mean(line_vectors, director)
+    return angle, alignment
+
+
+def get_max_alignment_angle(
+    segment_thickness_dict: dict, 
+    director: np.ndarray, 
+    box_size: float, 
+    grid_points: int = 360
+) -> float:
+    """Find the angle with the maximum alignment."""
+    angles = np.linspace(0, 2 * np.pi, grid_points)
+
+    with ProcessPoolExecutor() as executor:
+        results = executor.map(
+            compute_alignment_for_angle, 
+            angles, 
+            [segment_thickness_dict] * grid_points, 
+            [director] * grid_points, 
+            [box_size] * grid_points
+        )
+
+    return max(results, key=lambda x: x[1])[0]
+
+def orientate_network(
+    segment_thickness_dict: dict, 
+    config: list[dict], 
+    rotate_angle: float, 
+    box_size: float
+) -> list[dict]:
+    """
+    Rotates and clips a network of line segments within a bounding box.
+
+    Parameters:
+        segment_thickness_dict (dict): Segment data with start and end points.
+        config (list[dict]): Segment configuration with angle and thickness.
+        rotate_angle (float): Rotation angle in radians.    
+        box_size (float): Size of the bounding box.
+
+    Returns:
+        list[dict]: New segment positions, angles, and thicknesses.
+    """
+    center = np.array([box_size / 2, box_size / 2])
+    rotation_matrix = np.array([[np.cos(rotate_angle), -np.sin(rotate_angle)], [np.sin(rotate_angle), np.cos(rotate_angle)]])
+    box = Polygon_Shapely([(0, 0), (box_size, 0), (box_size, box_size), (0, box_size)])
+
+    segment_thickness_dict_new = {}
+    # orientated_config = []
+    for i, segment in enumerate(segment_thickness_dict.values()):
+        for vertex in segment.vertices:
+            angle_rotated = config[i]['angle'] - rotate_angle
+            start_rotated = rotate(np.array(v.middle_segment.start), center, rotation_matrix)
+            end_rotated = rotate(np.array(v.middle_segment.end), center, rotation_matrix)
+
+        # Find the intersection between the rotated line and the square
+        line_middle_point = LineString([start_rotated, end_rotated])
+
+        # Calculate the intersection between the box and the line
+        intersection = box.intersection(line_middle_point)
+
+        # Check if the line intersects the polygon
+        if intersection.is_empty:
+            continue
+        else:
+            length = intersection.length
+            # midpoint = intersection.interpolate(1/2, normalized=True)
+            midpoint = intersection.interpolate(length/2)
+
+            x = midpoint.xy[0][0]
+            y = midpoint.xy[1][0]
+
+            # orientated_config.append({ 'location': (x,y), 'angle': angle_rotated, 'thickness': config[i]['thickness'] })
+
+    # return orientated_config
+
+    return segment_thickness_dict_new
+
+def generate_line_segments_thickness_orientation(
+    size: int, 
+    thickness_arr: List[float], 
+    orientation: List[int],
+    angles: List[float],
+    config: List[List[float]] = None, 
+    epsilon: float = 0,
+    box_size: float = 1,
+    grid_points: int = 360
+    ) -> List[Tuple[Dict[str, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon], np.ndarray]]:
+    """
+    Generates a specified number of line segments and updates the polygon and segment thickness dictionaries.
+
+    Args:
+        size (int): The number of line segments to generate.
+        thickness_arr (List[float]): A list containing the thickness values for each segment to be generated.
+        angles (str): The angle distribution method for generating segments. Defaults to 'uniform'.
+                List[float]: list of angles in radians.
+        orientation (List[int]): the orientation of the model.
+        config (List[List[float]]): A list of configurations for the nucleation points and angles.
+        epsilon (float): the minimum distance between two line.
+        box_size (float): the size of the system.
+        grid_points (int): the number of points to test for the alignment.
+
+    Returns:
+        - an array of dictionaries for each orientation containing:
+        Tuple[Dict[str, LineSegment], Dict[str, Dict[str, object]], Dict[int, Polygon]]:
+            - Updated dictionary of line segments.
+            - Updated dictionary of polygons.
+            - Updated dictionary of segment thicknesses.
+            - Array of the nucleation points and angles [x,y,theta].
+    """
+    # Size of the box
+    box_size_0 = box_size*np.sqrt(2)
+
+    # Initial structure
+    data_dict = generate_line_segments_thickness(size = size,
+                                                        thickness_arr =  thickness_arr,
+                                                        epsilon= epsilon,
+                                                        config = config,
+                                                        angles = angles,
+                                                        box_size= box_size_0)
+    
+    segment_thickness_dict = data_dict['segment_thickness_dict']
+    generated_config = data_dict['generated_config']
+
+    # Calculate alignment with the y axis
+    director = (0,1)
+    max_angle = get_max_alignment_angle(segment_thickness_dict, director, box_size, grid_points)
+    
+    # Regenerate network for each orientation
+    output = [{'orientation': 'original', 'data_dict': data_dict}]
+    for o in orientation:
+        rotate_angle = o-max_angle
+        orientated_config = orientate_network(segment_thickness_dict, generated_config, rotate_angle, box_size)
+
+        data_dict_new = generate_line_segments_thickness(size=size,
+                                                                thickness_arr=thickness_arr,
+                                                                epsilon=epsilon,
+                                                                config=orientated_config,
+                                                                angles=angles,
+                                                                box_size=box_size)
+
+        output.append({'orientation': o, 'data_dict': data_dict_new})
+    
+    return output

RDG_networks/thickness/generate_line_segments_thickness_orientation.py

@@ -0,0 +1,394 @@
+import numpy as np
+from typing import List, Dict, Tuple
+from shapely.geometry import Polygon as Polygon_Shapely
+from shapely.geometry import LineString, box
+from concurrent.futures import ProcessPoolExecutor
+from .Classes import LineSegment, Polygon
+
+def rotate(point, center, rotation_matrix):
+    """
+    Rotates a point around the center using the given rotation matrix.
+    point: numpy array representing the point to rotate
+    center: numpy array representing the center of rotation
+    rotation_matrix: 2x2 numpy array representing the rotation matrix
+    """
+    translated_point = point - center
+    rotated_point = np.dot(rotation_matrix, translated_point)
+    final_point = rotated_point + center
+
+    return final_point
+
+def unit_vector(v):
+    """ Returns the unit vector of the vector. """
+    return v / np.linalg.norm(v)
+
+def angle_between(v1, v2):
+    """ Returns the angle in radians between vectors 'v1' and 'v2'."""
+    v1_u = unit_vector(v1)
+    v2_u = unit_vector(v2)
+    return np.arccos(np.clip(np.dot(v1_u, v2_u), -1.0, 1.0))
+
+def get_alignment_mean(line_vector_arr, director):
+    """Get the mean alignment."""
+    S_all = []
+    for item in line_vector_arr:
+        line_vector = item['line_vector']
+        area = item['area']
+        P2 = 0.5*(3*(np.cos(angle_between(line_vector, director)))**2-1)
+        S_all.append(P2*area)
+
+    return float(np.mean(S_all))
+
+def compute_alignment_for_angle(
+    angle: float, 
+    segment_thickness_dict: dict[str, Polygon],
+    director: np.ndarray, 
+    box_measurements: list[list[float]]
+) -> tuple[float, float]:
+    """
+    Computes the alignment of a network of segments for a given rotation angle.
+
+    This function rotates a network of segments based on the specified angle, clips the network to fit within the 
+    specified bounding box, and then calculates the alignment of the network relative to a director vector.
+
+    Parameters:
+    -----------
+    angle : float
+        The angle (in radians or degrees, depending on your implementation) by which to rotate the network of segments.
+    segment_thickness_dict : dict[str, object]
+        A dictionary where the keys are segment IDs (as strings) and the values are objects representing segments 
+        (should include properties like `middle_segment` and `area()`).
+    director : np.ndarray
+        A numpy array representing the director vector, typically a unit vector used for calculating the alignment.
+    box_measurements : list[list[float]]
+        A list containing the measurements of the bounding box. It typically contains four corner points as 
+        sublists, with each sublist representing [x, y] coordinates of a corner.
+
+    Returns:
+    --------
+    tuple[float, float]
+        A tuple where the first element is the input angle and the second element is the computed alignment value.
+    """
+    box_center = (np.array(box_measurements[0]) + np.array(box_measurements[2])) / 2
+
+    # Rotate network
+    segment_thickness_dict_new = rotate_network(segment_thickness_dict, rotate_angle=angle, box_center=box_center)
+
+    # Clip network
+    segment_thickness_dict_new = clip_network(segment_thickness_dict_new, box_measurements=box_measurements)
+
+    line_vectors = [
+        {'line_vector': [seg.middle_segment.start, seg.middle_segment.end], 'area': seg.area()}
+        for seg in segment_thickness_dict_new.values()
+    ]
+
+    alignment = get_alignment_mean(line_vectors, director)
+
+    return angle, alignment
+
+def rotate_network(
+    segment_thickness_dict: dict[str, Polygon],
+    rotate_angle: float, 
+    box_center: Tuple[float, float]
+) -> dict[str, object]:
+    """
+    Rotates a network of line segments around a given center point.
+
+    This function rotates each segment in the provided network by a specified angle around the center of a bounding box.
+    The segments are represented by their vertices and a middle segment, and both are transformed using a rotation matrix.
+
+    Parameters:
+    -----------
+    segment_thickness_dict : dict[str, object]
+        A dictionary where the keys are segment IDs (as strings) and the values are segment objects. Each segment 
+        object must have a `vertices` attribute (list of vertex coordinates) and a `middle_segment` attribute.
+    rotate_angle : float
+        The angle in radians by which to rotate the network of segments.
+    box_center : Tuple[float, float]
+        The (x, y) coordinates representing the center point around which to rotate the network.
+
+    Returns:
+    --------
+    dict[str, object]
+        A new dictionary with rotated segments, where the keys are the same segment IDs and the values are the 
+        transformed segment objects with updated vertices and middle segments.
+    """
+    # Define the center and rotation matrix for rotation
+    center = np.array([box_center[0], box_center[1]])
+    rotation_matrix = np.array([[np.cos(rotate_angle), -np.sin(rotate_angle)], 
+                                [np.sin(rotate_angle), np.cos(rotate_angle)]])
+
+    # Create a new dictionary to store the rotated segments
+    segment_thickness_dict_new = {}
+
+    # Iterate over each segment and apply the rotation
+    for id, segment in segment_thickness_dict.items():
+        vertices_new = []
+        # Rotate each vertex of the segment
+        for v in segment.vertices:
+            v_rotate = rotate(v, center, rotation_matrix)
+            vertices_new.append(v_rotate)
+
+        # Rotate the start and end points of the middle segment
+        start = rotate(segment.middle_segment.start, center, rotation_matrix)
+        end = rotate(segment.middle_segment.end, center, rotation_matrix)
+
+        # Create a new middle segment with rotated coordinates
+        middle_segment_new = LineSegment(start=start, end=end)
+        
+        # Store the rotated segment in the new dictionary
+        segment_thickness_dict_new[id] = Polygon(vertices=vertices_new, middle_segment=middle_segment_new)
+
+    return segment_thickness_dict_new
+
+def clip_network(
+    segment_thickness_dict: dict[str, Polygon],
+    box_measurements: list[list[float]]
+) -> dict[str, object]:
+    """
+    Clips the segments in the network to fit within a bounding box.
+
+    This function clips each segment in the network so that only the portions that lie inside the bounding box are retained. 
+    The bounding box is represented as a polygon, and any segment that intersects the box is clipped to the intersection area.
+
+    Parameters:
+    -----------
+    segment_thickness_dict : dict[str, object]
+        A dictionary where the keys are segment IDs (as strings) and the values are segment objects. Each segment 
+        object must have a `vertices` attribute (list of vertex coordinates) and a `middle_segment` attribute.
+    box_measurements : list[list[float]]
+        A list of 4 sublists, each representing the [x, y] coordinates of a corner of the bounding box.
+
+    Returns:
+    --------
+    dict[str, object]
+        A dictionary containing the clipped segments, where the keys are the same segment IDs and the values are the 
+        clipped segment objects with updated vertices and middle segments.
+    """
+    # Create a Shapely Polygon from the bounding box measurements
+    box_new = Polygon_Shapely([
+        (box_measurements[0][0], box_measurements[0][1]), 
+        (box_measurements[1][0], box_measurements[1][1]), 
+        (box_measurements[2][0], box_measurements[2][1]), 
+        (box_measurements[3][0], box_measurements[3][1])
+    ])
+
+    # Dictionary to store the clipped segments
+    segment_thickness_dict_new = {}
+
+    # Iterate over each segment
+    for id, segment in enumerate(segment_thickness_dict.values()):
+        vertices_new = []
+        vertices = segment.vertices
+
+        # Create a Shapely polygon for the segment's vertices
+        pol = Polygon_Shapely(vertices)
+
+        # Find the intersection between the segment's polygon and the bounding box
+        intersection = box_new.intersection(pol)
+        if not intersection.is_empty:
+            # If there is an intersection, retrieve the clipped vertices
+            vertices_new = list(intersection.exterior.coords)
+  
+        if vertices_new:
+            # If new vertices exist, clip the middle segment as well
+            start = segment.middle_segment.start
+            end = segment.middle_segment.end
+
+            middle_segment_new = None
+            # Find the intersection between the middle segment and the bounding box
+            intersection = box_new.intersection(LineString([start, end]))
+            if not intersection.is_empty:
+                start = list(intersection.coords)[0]
+                end = list(intersection.coords)[-1]
+                middle_segment_new = LineSegment(start=start, end=end)
+
+            # Create a new clipped polygon with updated vertices and middle segment
+            pol_new = Polygon(vertices=vertices_new, middle_segment=middle_segment_new)
+            pol_new.sort_vertices()  # Ensure vertices are sorted
+            segment_thickness_dict_new[id] = pol_new
+
+    return segment_thickness_dict_new
+
+def translate_network(
+    segment_thickness_dict: dict[str, Polygon],
+    translation_vector: np.ndarray
+) -> dict[str, object]:
+    """
+    Translates a network of line segments by a given translation vector.
+
+    This function moves each segment in the network by applying the translation vector to the coordinates of the vertices
+    and the start and end points of the middle segment (if it exists).
+
+    Parameters:
+    -----------
+    segment_thickness_dict : dict[str, object]
+        A dictionary where the keys are segment IDs (as strings) and the values are segment objects. Each segment 
+        object must have `vertices` (list of vertex coordinates) and `middle_segment` attributes.
+    translation_vector : np.ndarray
+        A 2D numpy array representing the translation vector [x, y] that will be applied to all the vertices and 
+        middle segments of each segment.
+
+    Returns:
+    --------
+    dict[str, object]
+        A new dictionary with the translated segments, where the keys are the same segment IDs and the values are 
+        the translated segment objects.
+    """
+    # Create a new dictionary to store the translated segments
+    segment_thickness_dict_new = {}
+
+    # Iterate over each segment and apply the translation
+    for id, segment in segment_thickness_dict.items():
+        # Translate the vertices by adding the translation vector to each vertex
+        vertices_new = [np.array(v) + translation_vector for v in segment.vertices]
+        
+        # Check if the segment has a middle segment to translate
+        if segment.middle_segment is None:
+            middle_segment_new = None
+        else:
+            start = segment.middle_segment.start + translation_vector
+            end = segment.middle_segment.end + translation_vector
+            middle_segment_new = LineSegment(start=start, end=end)
+        
+        # Store the translated segment in the new dictionary
+        segment_thickness_dict_new[id] = Polygon(vertices=vertices_new, middle_segment=middle_segment_new)
+
+    return segment_thickness_dict_new
+
+def get_alignment_mean(line_vector_arr, director):
+    """Get the mean alignment."""
+    S_all = []
+    for item in line_vector_arr:
+        line_vector = item['line_vector']
+        area = item['area']
+        P2 = 0.5*(3*(np.cos(angle_between(line_vector, director)))**2-1)
+        S_all.append(P2*area)
+
+    return float(np.mean(S_all))
+
+def compute_alignment_for_angle(
+    segment_thickness_dict: dict,
+    angle: float, 
+    box_center,
+    director: np.ndarray, 
+) -> tuple[float, float]:
+    """Compute the alignment for a given angle."""
+    
+    # Rotate the segment network for the given angle
+    segment_thickness_dict_rotated = rotate_network(segment_thickness_dict, rotate_angle=angle, box_center=box_center)
+    
+    # Create line vectors from the rotated segments
+    line_vectors = [] 
+    for s in segment_thickness_dict_rotated.values():
+        line_vectors.append({'line_vector': np.array([s.middle_segment.start, s.middle_segment.end]), 'area': s.area()})
+
+    # Compute the alignment for the current angle
+    alignment = get_alignment_mean(line_vectors, director)
+    return angle, alignment
+
+def get_max_alignment_angle(
+    segment_thickness_dict: dict, 
+    director: np.ndarray, 
+    box_measurements: list[float], 
+    grid_points: int = 360
+) -> float:
+    """Find the angle with the maximum alignment using parallel processing."""
+    
+    # Create a list of angles to evaluate
+    angles = np.linspace(0, 2 * np.pi, grid_points)
+
+    # Use ProcessPoolExecutor for parallel computation of alignment
+    with ProcessPoolExecutor() as executor:
+        # Submit tasks to the pool for each angle
+        results = list(executor.map(
+            compute_alignment_for_angle, 
+            [segment_thickness_dict] * len(angles),  # Same segment dictionary for all angles
+            angles,                                 # Different angles
+            [box_measurements] * len(angles),       # Same box measurements for all angles
+            [director] * len(angles)                # Same director for all angles
+        ))
+
+    # Find the angle with the maximum alignment
+    max_alignment = 0
+    max_angle = 0
+    for angle, alignment in results:
+        if alignment > max_alignment:
+            max_alignment = alignment
+            max_angle = angle
+
+    return max_angle
+
+def generate_line_segments_thickness_orientation(
+    data_dict: Dict[str, dict], 
+    orientation: List[int], 
+    grid_points: int = 360, 
+    box_measurements: List[Tuple[float, float]] = [(0, 0), (0, 1), (1, 1), (1, 0)]
+) -> List[Dict[str, dict]]:
+    """
+    Generates a set of networks of line segments with different thicknesses and orientations, and clips them to fit 
+    within a bounding box. The function also aligns the network to the maximum alignment angle with respect to the y-axis.
+
+    Parameters:
+    -----------
+    data_dict : Dict[str, dict]
+        A dictionary containing the initial network data. Must include the key 'segment_thickness_dict', which holds
+        the segment information.
+    orientation : List[int]
+        A list of orientations (angles in degrees or radians) to rotate the network. For each orientation, the network
+        is regenerated and rotated.
+    grid_points : int, optional
+        The number of grid points for calculating the maximum alignment angle (default is 360).
+    box_measurements : List[Tuple[float, float]], optional
+        A list of tuples representing the corner points of the bounding box (default is a unit square).
+
+    Returns:
+    --------
+    List[Dict[str, dict]]
+        A list of dictionaries. Each dictionary contains the 'orientation' of the network and the updated 'data_dict' 
+        with the rotated and clipped segment information.
+    """
+    
+    # Compute the center of the box
+    box_center = (np.array(box_measurements[0]) + np.array(box_measurements[2])) / 2
+    
+    # Extract the segment thickness dictionary from the input data
+    segment_thickness_dict = data_dict['segment_thickness_dict']
+
+    # Define the director vector along the y-axis
+    director = np.array([0, 1])
+    
+    # Find the angle that aligns the network most with the y-axis
+    max_angle = get_max_alignment_angle(segment_thickness_dict, director, box_measurements, grid_points)
+
+    # Store the initial unmodified configuration
+    output = [{'orientation': 'original', 'data_dict': data_dict}]
+    
+    # Loop through each given orientation, rotate, clip, and translate the network
+    for o in orientation:
+        # Compute the rotation angle for the current orientation relative to max alignment
+        rotate_angle = o - max_angle
+        
+        # Rotate the network by the computed angle
+        segment_thickness_dict_new = rotate_network(segment_thickness_dict, rotate_angle=rotate_angle, box_center=box_center)
+
+        # Clip the rotated network to fit within the bounding box
+        segment_thickness_dict_new = clip_network(segment_thickness_dict_new, box_measurements=box_measurements)
+
+        # Translate the clipped network to start at the origin (0,0)
+        translation_vector = -np.array(box_measurements[0])
+        segment_thickness_dict_new = translate_network(segment_thickness_dict_new, translation_vector)
+    
+        # Prepare a new data dictionary with the transformed segment information
+        data_dict_new = {
+            'segments_dict': None,
+            'polygon_arr': None,
+            'segment_thickness_dict': segment_thickness_dict_new,
+            'jammed': None,
+            'generated_config': None
+        }
+        
+        # Append the result for this orientation
+        output.append({'orientation': o, 'data_dict': data_dict_new})
+    
+    return output

RDG_Networks-0.3.4.dist-info/RECORD

@@ -1,19 +0,0 @@
-RDG_networks/Classes.py,sha256=_9X3JPHFAYYlaC8IZ_H9__sfz99G5l9UfPl65lL60_4,7977
-RDG_networks/__init__.py,sha256=juPsGdSg0t8rIjaELwsQPUKYXVVu1GrdbBI2ncd7lZ0,938
-RDG_networks/draw_segments.py,sha256=U53N5GXmQHWKdM1Q1faP_EGKjc6enOu2mcsunzSFpP0,984
-RDG_networks/generate_line_network.py,sha256=lJ4rhObim3WcEQoebomewRQKWNJC5phFyFYRW7qjXIg,1127
-RDG_networks/generate_line_segments.py,sha256=QV8_k7q6TD5c7Hcb2Ms_apEdWYw4XdLr7rdJgh49v4Q,9004
-RDG_networks/generate_line_segments_dynamic.py,sha256=GoIhGXYbcvjqR5BJCnkvAGp8QBpzsE1ZSbl2k9XAOGI,7531
-RDG_networks/generate_line_segments_static.py,sha256=7KvHZi3krv-tAGydJR_gbMMmHKZ5azzrKcQe3fuWzCE,9265
-RDG_networks/get_intersection_segments.py,sha256=mXB5qCy1oOps4Vu1mX6flW6v_4Xxc71YK41yOWjJX8o,2797
-RDG_networks/sample_in_polygon.py,sha256=qpPpW-Da1vK8ZkVWMJ0zBsE8IgyMB619gCdybSkzKSQ,1605
-RDG_networks/thickness/Classes.py,sha256=kgWNP5NCc11dTVAfujk30r_MsY2Xf4dAOmoalLRHa5E,8063
-RDG_networks/thickness/__init__.py,sha256=ixi8dBaMi-M_kCdxGfx8V0o_vOTv_anpAgLnPaBwysc,190
-RDG_networks/thickness/generate_line_segments_dynamic_thickness.py,sha256=i10rjKTB9PoFyMaUxVS99YQqegUXfeVfB1qZWryvxRk,25598
-RDG_networks/thickness/sample_in_polygon.py,sha256=nJ-yqfoCCGfC6_EpGL3L1t1LOYdqWZd-7v5bxy6th34,1849
-RDG_Networks-0.3.4.dist-info/LICENSE.txt,sha256=BHUkX2GsdTr30sKmVZ1MLGR1njnx17EX_oUuuSVZZPE,598
-RDG_Networks-0.3.4.dist-info/METADATA,sha256=NrwTO4MslrgfxoBqUxHctABU8Ibht3LxDJZHtdb3k9w,2422
-RDG_Networks-0.3.4.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
-RDG_Networks-0.3.4.dist-info/entry_points.txt,sha256=6AGpOd8ecHGEsoUhRj0j6VvN_Fg0QNCY8h5rInAJom0,542
-RDG_Networks-0.3.4.dist-info/top_level.txt,sha256=4gUUYafD5Al9V8ZSiViVGYHpRMMCsCBcGgCNodk9Syg,13
-RDG_Networks-0.3.4.dist-info/RECORD,,

RDG_Networks-0.3.4.dist-info/entry_points.txt

@@ -1,8 +0,0 @@
-[console_scripts]
-draw_segments = RDG_networks.draw_segments:main
-generate_line_network = RDG_networks.generate_line_network:main
-generate_line_segments = RDG_networks.generate_line_segments:main
-generate_line_segments_dynamic = RDG_networks.generate_line_segments_dynamic:main
-generate_line_segments_dynamic_thickness = RDG_networks.thickness.generate_line_segments_dynamic_thickness:main
-generate_line_segments_static = RDG_networks.generate_line_segments_static:main
-get_intersection_segments = RDG_networks.get_intersection_segments:main