PySDKit 0.1__py3-none-any.whl → 0.4__py3-none-any.whl

PySDKit-0.4.dist-info/LICENSE

@@ -0,0 +1,121 @@
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PySDKit-0.4.dist-info/METADATA

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+Metadata-Version: 2.1
+Name: PySDKit
+Version: 0.4
+Summary: A Python library for signal decomposition algorithms with a unified interface
+Home-page: https://github.com/wwhenxuan/PySDKit
+Author: whenxuan
+Author-email: wwhenxuan@gmail.com
+Keywords: signal,decomposition
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Requires-Python: >=3.6
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy (>=1.24.3)
+Requires-Dist: scipy (>=1.11.1)
+Requires-Dist: matplotlib (>=3.7.2)
+
+# PySDKit: signal decomposition in Python
+
+[![PyPI version](https://badge.fury.io/py/PySDKit.svg)](https://pypi.org/project/PySDKit/) ![License](https://img.shields.io/github/license/wwhenxuan/PySDKit) [![codecov](https://codecov.io/gh/wwhenxuan/PySDKit/branch/main/graph/badge.svg?token=YOUR_TOKEN)](https://codecov.io/gh/wwhenxuan/PySDKit) [![arXiv](https://img.shields.io/badge/arXiv-1234.56789-brightgreen.svg)](https://arxiv.org/abs/1234.56789) [![Downloads](https://pepy.tech/badge/pysdkit)](https://pepy.tech/project/pysdkit) ![Static Badge](https://img.shields.io/badge/https%3A%2F%2Fimg.shields.io%2Fbadge%2Fjust%2520the%2520message--8A2BE2?logo=appveyor&logoColor=royalblue&label=NumPy&link=https%3A%2F%2Fnumpy.org%2Fdoc%2Fstable%2F) ![Static Badge](https://img.shields.io/badge/https%3A%2F%2Fimg.shields.io%2Fbadge%2Fjust%2520the%2520message--8A2BE2?logo=appveyor&logoColor=violet&label=SciPy&link=https%3A%2F%2Fdocs.scipy.org%2Fdoc%2Fscipy%2F)
+
+
+A Python library for signal decomposition algorithms
+
+<div align="center">
+<img src=".\images\Logo_sd.png" alt="Logo_sd" width="500"/>
+</div>
+
+## Installation
+
+You can install `PySDKit` through pip.
+
+~~~
+pip install pysdkit
+~~~
+
+We only used [`NumPy`](https://numpy.org/), [`Scipy`](https://scipy.org/) and [`matplotlib`](https://matplotlib.org/) when developing the project.
+
+## Example script
+
+This project integrates simple signal processing methods, signal decomposition and visualization, and builds a general interface similar to [`Scikit-learn`](https://scikit-learn.org/stable/). It is mainly divided into three steps:
+1. Import the signal decomposition method;
+2. Create an instance for signal decomposition;
+3. Use the `fit_transform` method to implement signal decomposition;
+4. Visualize and analyze the original signal and the intrinsic mode functions IMFs obtained by decomposition.
+
+~~~python
+from pysdkit import EMD
+from pysdkit.data import test_emd
+from pysdkit.plot import plot_IMFs
+
+t, signal = test_emd()
+
+# create an instance for signal decomposition
+emd = EMD()
+# implement signal decomposition
+IMFs = emd.fit_transform(signal, max_imf=2)
+plot_IMFs(signal, IMFs)
+~~~
+
+<img src=".\images\example.jpg" alt="example" />
+
+The EMD in the above example is the most classic `empirical mode decomposition` algorithm in signal decomposition. For more complex signals, you can try other algorithms such as variational mode decomposition ([`VMD`](https://ieeexplore.ieee.org/abstract/document/6655981)).
+
+~~~python
+from pysdkit import VMD
+
+# load new signal
+signal = np.load("example.npy")
+
+# use variational mode decomposition
+vmd = VMD(alpha=500, K=3, tau=0.0, tol=1e-9)
+IMFs = vmd.fit_transform(signal=signal)
+print(IMFs.shape)
+
+vmd.plot_IMFs(save_figure=True)
+~~~
+
+<img src=".\images\vmd_example.jpg" alt="vmd_example.jpg" />
+
+Better observe the characteristics of the decomposed intrinsic mode function in the frequency domain.
+
+~~~python
+from pysdkit.plot import plot_IMFs_amplitude_spectra
+
+# frequency domain visualization
+plot_IMFs_amplitude_spectra(IMFs, smooth="exp")   # use exp smooth
+~~~
+
+<img src=".\images\frequency_example.jpg" alt="frequency_example" />
+

PySDKit-0.4.dist-info/RECORD

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PySDKit-0.4.dist-info/top_level.txt

@@ -0,0 +1 @@
+pysdkit

pysdkit/__init__.py

@@ -0,0 +1,14 @@
+# 经验模态分解算法
+from .emd import EMD
+
+# 变分模态分解算法
+from .vmd import vmd, VMD
+
+# 多元变分模态分解算法
+from .vmd import MVMD
+
+# 非线性啁啾模式分解
+from .vncmd import VNCMD
+
+# 经验小波变换
+from .ewt import EWT1D

pysdkit/data/__init__.py

@@ -0,0 +1,20 @@
+# -*- coding: utf-8 -*-
+"""
+Created on 2024/7/22 22:56
+@author: Whenxuan Wang
+@email: wwhenxuan@gmail.com
+"""
+
+# A series of functions for generating 1D NumPy signals
+from ._generator import generate_sin_signal, generate_cos_signal
+from ._generator import generate_square_wave, generate_triangle_wave, generate_sawtooth_wave
+from ._generator import generate_am_signal, generate_exponential_signal
+
+# Generates the main test sample signal
+from ._generator import test_emd
+
+# Functions that generate signal visualizations
+from ._generator import plot_generate_signal
+
+# add Gaussian noise
+from ._add_noise import add_noise

pysdkit/data/_add_noise.py

@@ -0,0 +1,35 @@
+# -*- coding: utf-8 -*-
+"""
+Created on Sat Mar 8 21:45:02 2024
+@author: Whenxuan Wang
+@email: wwhenxuan@gmail.com
+"""
+import numpy as np
+
+
+def add_noise(N: int, Mean: float, STD: float) -> np.ndarray:
+    """
+    Generate Gaussian white noise with mean values Mean and standard deviation STD.
+    :param N: The number of samples.
+    :param Mean: The mean value of the noise.
+    :param STD: The standard deviation of the noise.
+    :return: numpy.ndarray: Generated Gaussian white noise.
+    """
+    # Generate noise using the given mean and standard deviation
+    y = np.random.randn(N)
+    # Standardize y so that its standard deviation is 1
+    y = y / np.std(y)
+    # Adjust y so that its mean is 0
+    y = y - np.mean(y)
+    # Generate noise using the given mean and standard deviation
+    y = Mean + STD * y
+
+    return y
+
+
+if __name__ == '__main__':
+    N = 1000
+    Mean = 0
+    STD = 1
+    noise = add_noise(N, Mean, STD)
+    print(noise)

pysdkit/data/_generator.py

@@ -0,0 +1,240 @@
+# -*- coding: utf-8 -*-
+"""
+Created on Sat Mar 8 21:45:02 2024
+@author: Whenxuan Wang
+@email: wwhenxuan@gmail.com
+"""
+import numpy as np
+from scipy.signal import sawtooth
+from matplotlib import pyplot as plt
+
+from typing import Tuple
+
+
+def generate_sin_signal(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.2,
+                        frequency: float = 10.0, rand_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate a Cosine signal with Gaussian noise and a sinusoidal component.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param frequency: Frequency of the sinusoidal component.
+    :param rand_state: Random seed for the noise in signal.
+    :return: Array of the Cosine signal.
+    """
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    signal = np.sin(2 * np.pi * frequency * t)  # Sinusoidal signal
+    np.random.seed(seed=rand_state)
+    noise = np.random.normal(0, noise_level, signal.shape)  # Gaussian noise
+    emg_signal = signal + noise  # Superimpose signal and noise
+    return t, emg_signal
+
+
+def generate_cos_signal(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.2,
+                        frequency: float = 10.0, rand_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate a Cosine signal with Gaussian noise and a sinusoidal component.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param frequency: Frequency of the sinusoidal component.
+    :param rand_state: Random seed for the noise in signal.
+    :return: Array of the Cosine signal.
+    """
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    signal = np.cos(2 * np.pi * frequency * t)  # Sinusoidal signal
+    np.random.seed(seed=rand_state)
+    noise = np.random.normal(0, noise_level, signal.shape)  # Gaussian noise
+    emg_signal = signal + noise  # Superimpose signal and noise
+    return t, emg_signal
+
+
+def generate_square_wave(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.2,
+                         frequency: float = 10.0, rand_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate a square wave signal with Gaussian noise.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param frequency: Frequency of the square wave component.
+    :param rand_state: Random seed for the noise in signal.
+    :return: Tuple containing time array and the square wave signal with noise.
+    """
+    np.random.seed(rand_state)
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    square_wave = np.sign(np.sin(2 * np.pi * frequency * t))  # Generate a basic square wave
+    noise = np.random.normal(0, noise_level, square_wave.shape)  # Gaussian noise
+    noisy_square_wave = square_wave + noise
+    return t, noisy_square_wave
+
+
+def generate_triangle_wave(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.2,
+                           frequency: float = 10.0, rand_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate a triangular wave signal with Gaussian noise.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param frequency: Frequency of the triangular wave component.
+    :param rand_state: Random seed for the noise in signal.
+    :return: Tuple containing time array and the triangular wave signal with noise.
+    """
+    np.random.seed(rand_state)  # Set random seed for reproducibility
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    # Generate the triangular wave using the sawtooth function and converting it to a triangular shape
+    from scipy.signal import sawtooth
+    triangle_wave = 2 * np.abs(sawtooth(2 * np.pi * frequency * t, 0.5)) - 1
+    noise = np.random.normal(0, noise_level, triangle_wave.shape)  # Add Gaussian noise
+    noisy_triangle_wave = triangle_wave + noise  # Combine triangle wave with noise
+    return t, noisy_triangle_wave
+
+
+def generate_sawtooth_wave(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.2,
+                           frequency: float = 10.0, rand_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate a sawtooth wave signal with Gaussian noise.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param frequency: Frequency of the sawtooth wave component.
+    :param rand_state: Random seed for the noise in signal.
+    :return: Tuple containing time array and the sawtooth wave signal with noise.
+    """
+    np.random.seed(rand_state)  # Set the random seed for reproducibility
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    saw_wave = sawtooth(2 * np.pi * frequency * t)  # Generate a pure sawtooth wave
+    noise = np.random.normal(0, noise_level, saw_wave.shape)  # Add Gaussian noise
+    noisy_saw_wave = saw_wave + noise  # Combine sawtooth wave with noise
+    return t, noisy_saw_wave
+
+
+def generate_am_signal(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.1,
+                       carrier_freq: float = 100.0, modulating_freq: float = 5.0, mod_index: float = 1.0,
+                       rand_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate an Amplitude Modulated (AM) signal with Gaussian noise.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param carrier_freq: Frequency of the carrier signal.
+    :param modulating_freq: Frequency of the modulating signal.
+    :param mod_index: Modulation index.
+    :param rand_state: Random seed for the noise generation.
+    :return: Tuple containing time array and the AM signal with noise.
+    """
+    np.random.seed(rand_state)  # Set the random seed for reproducibility
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    # Carrier signal
+    carrier = np.cos(2 * np.pi * carrier_freq * t)
+    # Modulating signal
+    modulating_signal = np.cos(2 * np.pi * modulating_freq * t)
+    # Amplitude Modulated signal
+    am_signal = (1 + mod_index * modulating_signal) * carrier
+    # Add Gaussian noise
+    noise = np.random.normal(0, noise_level, am_signal.shape)
+    noisy_am_signal = am_signal + noise  # AM signal with noise
+    return t, noisy_am_signal
+
+
+def generate_exponential_signal(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.1,
+                                decay_rate: float = 1.0, initial_amplitude: float = 1.0,
+                                rand_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate an exponentially decaying signal with Gaussian noise.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param decay_rate: Exponential decay rate (larger values decay faster).
+    :param initial_amplitude: Initial amplitude of the signal.
+    :param rand_state: Random seed for the noise generation.
+    :return: Tuple containing time array and the exponentially decaying signal with noise.
+    """
+    np.random.seed(rand_state)  # Set the random seed for reproducibility
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    # Exponentially decaying signal
+    exp_signal = initial_amplitude * np.exp(-decay_rate * t)
+    # Add Gaussian noise
+    noise = np.random.normal(0, noise_level, exp_signal.shape)
+    noisy_exp_signal = exp_signal + noise  # Exponential signal with noise
+    return t, noisy_exp_signal
+
+
+def base_example(duration: float = 6.0, sampling_rate: int = 128, noise_level: float = 0.0,
+                 random_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate 5 * sin(2 * pi * t) + 3 * sin(2 * pi * t)
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param random_state: Random seed for the noise generation.
+    :return: Tuple containing time array and the 5 * sin(2 * pi * t) + 3 * sin(2 * pi * t) signal with noise.
+    """
+    np.random.seed(seed=random_state)
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    signal = 5 * np.sin(2 * np.pi * t) + 3 * np.sin(2 * np.pi * t)
+    noise = np.random.normal(0, noise_level, signal.shape)
+    noise_signal = signal + noise
+    return t, noise_signal
+
+
+def fun(duration: float = 10.0, sampling_rate: int = 128) -> Tuple[np.array, np.array]:
+    """
+    Generate 3 * 2 ^ (-t) * sin(sin(2 * pi * t))
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :return: Tuple containing time array and the 3 * 2 ^ (-t) * sin(sin(2 * pi * t)) signal.
+    """
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    signal = 3 * 2 ^ (-t) * np.sin(np.sin(2 * np.pi * t))
+    return t, signal
+
+
+def test_emd(duration: float = 1.0, sampling_rate: int = 1000, noise_level: float = 0.1,
+             random_state: int = 42) -> Tuple[np.array, np.array]:
+    """
+    Generate cos(22 * pi * t ^ 2) + 6 * t ^ 2 for emd test.
+    :param duration: Length of the signal in seconds.
+    :param sampling_rate: Number of samples per second.
+    :param noise_level: Standard deviation of the Gaussian noise.
+    :param random_state: Random seed for the noise generation.
+    :return: Tuple containing time array and the cos(22 * pi * t ^ 2) + 6 * t ^ 2 signal with noise.
+    """
+    np.random.seed(seed=random_state)
+    t = np.linspace(0, duration, int(sampling_rate * duration), endpoint=False)
+    signal = np.cos(22 * np.pi * t ** 2) + 2 * t ** 2
+    noise = np.random.normal(0, noise_level, signal.shape)
+    noise_signal = signal + noise
+    return t, noise_signal
+
+
+def plot_generate_signal(t: np.array, signal: np.array, color: str = 'royalblue', save: bool = False,
+                         figsize: Tuple = (12, 4), dpi: int = 600, fontsize: int = 15) -> plt.figure:
+    """
+    Plot and optionally save an amplitude modulated (AM) signal with time on the x-axis and amplitude on the y-axis.
+    :param t: Array of time points corresponding to the signal.
+    :param signal: Array containing the signal data to be plotted.
+    :param color: Color of the plot line.
+    :param save: Boolean flag to indicate whether the plot should be saved to a file.
+    :param figsize: Tuple representing the width and height of the figure in inches.
+    :param dpi: Dots per inch (resolution) of the figure, if saved.
+    :param fontsize: Font size of the axis labels.
+    :return: The figure object containing the plot.
+    """
+    # Create a figure and a single subplot
+    fig, ax = plt.subplots(figsize=figsize)
+    # Plot the signal against time with specified line color
+    ax.plot(t, signal, color=color)
+    # Set the x-axis label with specified font size
+    ax.set_xlabel('Time (seconds)', fontsize=fontsize)
+    # Set the y-axis label with default font size
+    ax.set_ylabel('Amplitude')
+    # Enable grid for better readability
+    ax.grid(True)
+    # Display the plot
+    plt.show()
+    # Check if the figure needs to be saved
+    if save:
+        # Save the figure with the specified dpi and bounding box tightly around the figure
+        fig.savefig("generate_signal.jpg", dpi=dpi, bbox_inches='tight')
+    # Return the figure object
+    return fig