PySAR 2.5.0__py3-none-any.whl

docs/conf.py

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+# Configuration file for the Sphinx documentation builder.
+#
+# For the full list of built-in configuration values, see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+import os
+import sys
+
+# Make pySAR importable without installing it
+sys.path.insert(0, os.path.abspath('..'))
+
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+project = 'pySAR'
+copyright = '2026, AJ McKenna'
+author = 'AJ McKenna'
+release = '2.5.0'
+
+# -- General configuration ---------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
+
+extensions = [
+    'sphinx.ext.autodoc',
+    'sphinx.ext.napoleon',
+    'sphinx_autodoc_typehints',
+    'sphinx_autodoc_defaultargs',
+]
+
+# Mock heavy C-extension dependencies so RTD doesn't need to compile them
+autodoc_mock_imports = [
+    'numpy',
+    'pandas',
+    'scipy',
+    'sklearn',
+    'matplotlib',
+    'seaborn',
+    'tqdm',
+    'delayed',
+    'aaindex',
+    'protpy',
+]
+
+templates_path = ['_templates']
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+
+
+# -- Options for HTML output -------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
+
+# html_theme = 'alabaster'
+html_theme = 'sphinx_rtd_theme'

pySAR/__init__.py

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+""" pySAR software metadata. """
+__name__ = 'pySAR'
+__version__ = "2.5.0"
+__description__ = 'A Python package used to analysis Sequence Activity Relationships (SARs) of protein sequences and their mutants using Machine Learning.'
+__author__ = 'AJ McKenna: https://github.com/amckenna41'
+__authorEmail__ = 'amckenna41@qub.ac.uk'
+__maintainer__ = "AJ McKenna"
+__license__ = 'MIT'
+__url__ = 'https://github.com/amckenna41/pySAR'
+__download_url__ = "https://github.com/amckenna41/pySAR/archive/refs/heads/main.zip"
+__status__ = "Production"
+__keywords__ = ["bioinformatics", "protein engineering", "python", "pypi", "machine learning", \
+        "directed evolution", "drug discovery", "sequence activity relationships", "SAR", "aaindex", "protpy", "protein descriptors"]
+__test_suite__ = "tests"
+
+__all__ = [
+    '__version__',
+    '__description__',
+    '__author__',
+    '__authorEmail__',
+    '__maintainer__',
+    '__license__',
+    '__url__',
+    '__download_url__',
+    '__status__',
+    '__keywords__',
+    '__test_suite__',
+]