PyMieSim 3.5.4.3__cp312-cp312-macosx_14_0_arm64.whl → 3.6.0__cp312-cp312-macosx_14_0_arm64.whl

PyMieSim/__init__.py

@@ -1,4 +1,11 @@
-from PyMieSim.units import Quantity  # God knows why removing this line make the test fails on mac x86_64! DO NOT REMOVE!
+"""PyMieSim package initialization.
+
+This module exposes the package version and sets up unit handling.  Importing
+``Quantity`` here ensures proper initialization on all platforms.  Removing this
+import causes unit tests to fail on macOS systems.
+"""
+
+from PyMieSim.units import Quantity  # required for unit registration on macOS
 
 try:
     from ._version import version as __version__
@@ -7,5 +14,3 @@ except ImportError:
     __version__ = "0.0.0"
 
 debug_mode = False
-
-# -

PyMieSim/__main__.py

@@ -1,4 +1,6 @@
 
+"""Entry point for launching the experimental PyMieSim GUI."""
+
 from PyMieSim.gui.interface import OpticalSetupGUI
 
 

PyMieSim/_version.py

@@ -17,5 +17,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '3.5.4.3'
-__version_tuple__ = version_tuple = (3, 5, 4, 3)
+__version__ = version = '3.6.0'
+__version_tuple__ = version_tuple = (3, 6, 0)

PyMieSim/single/scatterer/core_shell.py

@@ -1,6 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 
+import numpy
 import pyvista
 from PyOptik.material.base_class import BaseMaterial
 
@@ -35,7 +36,7 @@ class CoreShell(CORESHELL, BaseScatterer):
     source: BaseSource
 
     property_names = [
-        "size_parameter", "cross_section", "g",
+        "size_parameter", "radius", "volume", "cross_section", "g",
         "Qsca", "Qext", "Qabs", "Qback", "Qratio", "Qpr",
         "Csca", "Cext", "Cabs", "Cback", "Cratio", "Cpr"
     ]
@@ -85,6 +86,17 @@ class CoreShell(CORESHELL, BaseScatterer):
             source=self.source
         )
 
+    @property
+    def radius(self) -> units.Quantity:
+        """Return the outer radius of the scatterer."""
+        return self.core_diameter / 2 + self.shell_thickness
+
+    @property
+    def volume(self) -> units.Quantity:
+        """Return the volume of the scatterer."""
+        vol = (4/3) * numpy.pi * (self.radius ** 3)
+        return vol.to(units.meter ** 3)
+
     def _add_to_3d_ax(self, scene: pyvista.Plotter, color: str = 'black', opacity: float = 1.0) -> None:
         """
         Adds a 3D cone representation to the given PyVista plotting scene.

PyMieSim/single/scatterer/cylinder.py

@@ -27,7 +27,7 @@ class Cylinder(CYLINDER, BaseScatterer):
     source: BaseSource
 
     property_names = [
-        "size_parameter", "cross_section", "g",
+        "size_parameter", "radius", "cross_section", "g",
         "Qsca", "Qext", "Qabs",
         "Csca", "Cext", "Cabs"
     ]
@@ -62,6 +62,11 @@ class Cylinder(CYLINDER, BaseScatterer):
             source=self.source
         )
 
+    @property
+    def radius(self) -> units.Quantity:
+        """Return the radius of the cylinder."""
+        return self.diameter / 2
+
     @property
     def Cback(self) -> None:
         raise NotImplementedError

PyMieSim/single/scatterer/sphere.py

@@ -1,6 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 
+import numpy
 import pyvista
 from PyOptik.material.base_class import BaseMaterial
 
@@ -29,7 +30,7 @@ class Sphere(SPHERE, BaseScatterer):
     source: BaseSource
 
     property_names = [
-        "size_parameter", "cross_section", "g",
+        "size_parameter", "radius", "volume", "cross_section", "g",
         "Qsca", "Qext", "Qabs", "Qback", "Qratio", "Qpr",
         "Csca", "Cext", "Cabs", "Cback", "Cratio", "Cpr"
     ]
@@ -66,6 +67,17 @@ class Sphere(SPHERE, BaseScatterer):
             source=self.source
         )
 
+    @property
+    def radius(self) -> units.Quantity:
+        """Return the radius of the sphere."""
+        return self.diameter / 2
+
+    @property
+    def volume(self) -> units.Quantity:
+        """Return the volume of the sphere."""
+        vol = (4/3) * numpy.pi * (self.radius ** 3)
+        return vol.to(units.meter ** 3)
+
     def _add_to_3d_ax(self, scene: pyvista.Plotter, color: str = 'black', opacity: float = 1.0) -> None:
         """
         Adds a 3D cone representation to the given PyVista plotting scene.

PyMieSim/special_functions.py

@@ -56,22 +56,21 @@ def spherical_to_cartesian(phi: numpy.ndarray, theta: numpy.ndarray, r: numpy.nd
 
 
 def rotate_on_x(phi: numpy.ndarray, theta: numpy.ndarray, angle: float) -> tuple:
-    """
-    Rotate spherical coordinates around the X-axis.
+    """Rotate spherical coordinates around the X-axis.
 
     Parameters
     ----------
     phi : numpy.ndarray
-        The phi angles.
+        Azimuthal angles in radians.
     theta : numpy.ndarray
-        The theta angles.
-    r : numpy.ndarray
-        The radial distances; defaults to unit radius if None.
+        Polar angles in radians.
+    angle : float
+        Rotation angle about the X-axis, in radians.
 
     Returns
     -------
-    numpy.ndarray
-        The Cartesian coordinates (x, y, z).
+    tuple
+        The rotated spherical coordinates ``(r, phi, theta)``.
     """
     # Convert to Cartesian for rotation
     x, y, z = spherical_to_cartesian(phi, theta)

{pymiesim-3.5.4.3.dist-info → pymiesim-3.6.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: PyMieSim
-Version: 3.5.4.3
+Version: 3.6.0
 Summary: A package for light scattering computation.
 Keywords: mie,scattering,backscatter,sphere,cylinder,nanoparticle,phase function,efficiency,rayleigh,backscattering
 Author-Email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
@@ -47,29 +47,28 @@ Project-URL: Documentation, https://martinpdes.github.io/PyMieSim/
 Project-URL: Repository, https://github.com/MartinPdeS/PyMieSim
 Requires-Python: >=3.10
 Requires-Dist: setuptools_scm[toml]~=8.0
-Requires-Dist: flexparser<0.5
 Requires-Dist: numpy==2.2.6
 Requires-Dist: matplotlib==3.10.3
 Requires-Dist: MPSPlots==1.6.4
 Requires-Dist: pydantic<2.12.0,>=2.9.2
 Requires-Dist: pint-pandas~=0.6
 Requires-Dist: pandas~=2.3.0
-Requires-Dist: PyOptik==1.10.8
+Requires-Dist: PyOptik==1.11.0
 Requires-Dist: tabulate~=0.9
 Requires-Dist: pyvista==0.45.2
 Provides-Extra: testing
 Requires-Dist: pytest>=0.6; extra == "testing"
 Requires-Dist: pytest-cov>=2.0; extra == "testing"
 Requires-Dist: pytest-json-report==1.5.0; extra == "testing"
-Requires-Dist: coverage==7.9.1; extra == "testing"
+Requires-Dist: coverage==7.9.2; extra == "testing"
 Provides-Extra: documentation
-Requires-Dist: numpydoc==1.8.0; extra == "documentation"
+Requires-Dist: numpydoc==1.9.0; extra == "documentation"
 Requires-Dist: sphinx>=5.1.1; extra == "documentation"
 Requires-Dist: sphinx-rtd-theme==3.0.2; extra == "documentation"
 Requires-Dist: sphinx-gallery==0.19.0; extra == "documentation"
 Requires-Dist: pydata-sphinx-theme==0.16.1; extra == "documentation"
 Provides-Extra: dev
-Requires-Dist: flake8==7.2.0; extra == "dev"
+Requires-Dist: flake8==7.3.0; extra == "dev"
 Description-Content-Type: text/x-rst
 
 |logo|
@@ -86,191 +85,98 @@ Description-Content-Type: text/x-rst
      - |ci/cd|
      - |coverage|
      - |colab|
-   * - PyPi
-     - |PyPi|
-     - |PyPi_download|
+   * - PyPI
+     - |PyPI|
+     - |PyPI_download|
      -
    * - Anaconda
      - |anaconda|
      - |anaconda_download|
      - |anaconda_date|
 
-
-
-
 PyMieSim
 ========
 
-**PyMieSim** is a Python library designed to provide a robust and flexible framework for performing Mie scattering simulations.
-The software is easy to install and operate, making it accessible to both new users and experienced researchers.
-PyMieSim enables users to explore the scattering properties of particles under various configurations, and is tailored for investigating single scattering events, as well as conducting large-scale parametric experiments.
-
-At its core, PyMieSim includes three solvers optimized for different types of scatterers:
-
-- **Spherical particles**
-- **Infinite cylindrical particles**
-- **Core-shell spherical particles**
-
-The software also allows the user to customize the light source and detector attributes, depending on the specific simulation needs. The package is modular and provides an intuitive interface for users to model complex scattering scenarios with minimal effort.
-
-|code_structure|
-
-Main Submodules
----------------
-
-PyMieSim is organized into two primary submodules:
-
-1. **single**: Focused on analyzing individual scattering events, such as:
-   - Far-field distributions
-   - Scattering phase functions
-   - Stokes parameters
-
-2. **experiment**: Designed for exploring how scattering parameters, such as `Qsca`, `Qext`, `g`, and `coupling (power)`, behave over large datasets, incorporating variations in sources, scatterers, and detectors.
+**PyMieSim** is an open-source Python package for fast and flexible Mie
+scattering simulations.  It supports spherical, cylindrical and core--shell
+particles and provides helper classes for custom sources and detectors.
+The project targets both quick single-scatterer studies and large parametric
+experiments.
 
-Both submodules work seamlessly together, making PyMieSim adaptable for a wide range of scattering simulations.
-
-
-----
-
-Getting Started
----------------
-
-To use PyMieSim in Python, simply install the package and begin incorporating it into your scripts.
+Features
+--------
+- Solvers for spheres, cylinders and core--shell geometries.
+- Built-in models for plane wave and Gaussian sources.
+- Multiple detector types including photodiodes and coherent modes.
+- Simple data analysis with pandas DataFrame outputs.
 
 Installation
-************
-
-PyMieSim supports Windows, Linux, macOS (including Apple M1/M2 chips), and ARM architectures. To install the package, use pip:
+------------
+PyMieSim is available on PyPI and Anaconda.  Install it with:
 
 .. code-block:: bash
 
-    pip install PyMieSim (using pip package manager)
-
-    conda install PyMieSim (using conda environment manager)
+   pip install PyMieSim
+   conda install PyMieSim
 
-For more details, visit the `documentation <https://pymiesim.readthedocs.io/en/latest/>`_ for a comprehensive guide on how to use the package.
-
-----
-
-Example Code
-------------
+See the `online documentation <https://pymiesim.readthedocs.io/>`_ for detailed
+usage and additional examples.
 
-Here is an example of how to use PyMieSim for a simple Mie scattering simulation. This example demonstrates how to configure a light source, scatterer, and detector, and retrieve the scattering data:
+Quick example
+-------------
+Below is a short example computing the scattering efficiency of a sphere.
 
 .. code-block:: python
 
-    import numpy as np
-
-    from PyMieSim.experiment.scatterer import Sphere
-    from PyMieSim.experiment.source import Gaussian
-    from PyMieSim.experiment import Setup
-    from PyMieSim.units import nanometer, degree, watt, AU, RIU
-
-    source = Gaussian(
-        wavelength=np.linspace(400, 1000, 500) * nanometer,
-        polarization=0 * degree,
-        optical_power=1e-3 * watt,
-        NA=0.2 * AU
-    )
-
-    scatterer = Sphere(
-        diameter=[200] * nanometer,
-        property=[4] * RIU,
-        medium_property=1 * RIU,
-        source=source
-    )
-
-    experiment = Setup(scatterer=scatterer, source=source)
-
-    dataframe = experiment.get('Qsca')
-
-    dataframe.plot_data(x="source:wavelength")
-
-
-It produces the following figure which is equivalent to the one found on `wikipedia <https://en.wikipedia.org/wiki/Mie_scattering#/media/File:N4wiki.svg>`_.
-
-|wikipedia_example|
-
-
-This is just one example of PyMieSim in action. You can find more examples in the
-`examples section <https://pymiesim.readthedocs.io/en/master/gallery/index.html>`_ of the documentation.
-
-----
-
-Examples
---------
-
-Here are a few more examples showcasing the capabilities of PyMieSim:
-
-Example 1: Plasmonic Resonances for CoreShell Particles
-*******************************************************
-
-|example_plasmon|
-
-Example 2: Scattering Efficiency vs Diameter for Spherical Particles
-********************************************************************
-
-|example_qsca|
-
-----
-
-Manual Building
----------------
-
-If you prefer or need to build the project manually (e.g., for Apple silicon devices), ensure you have a C++ compiler (such as gcc) and Fortran installed, as well as Python 3.7+.
-
-Build Instructions
-******************
-
-Linux/MacOS
-~~~~~~~~~~~
+   import numpy as np
+   from PyMieSim.experiment.scatterer import Sphere
+   from PyMieSim.experiment.source import Gaussian
+   from PyMieSim.experiment import Setup
+   from PyMieSim.units import nanometer, degree, watt, AU, RIU
+
+   source = Gaussian(
+       wavelength=np.linspace(400, 1000, 500) * nanometer,
+       polarization=0 * degree,
+       optical_power=1e-3 * watt,
+       NA=0.2 * AU,
+   )
+
+   scatterer = Sphere(
+       diameter=[200] * nanometer,
+       property=[4] * RIU,
+       medium_property=1 * RIU,
+       source=source,
+   )
+
+   experiment = Setup(scatterer=scatterer, source=source)
+   df = experiment.get("Qsca")
+   df.plot_data(x="source:wavelength")
+
+Building from source
+--------------------
+For development or manual compilation, clone the repository and run:
 
 .. code-block:: bash
 
-    git clone https://github.com/MartinPdeS/PyMieSim.git
-    cd PyMieSim
-    git submodule init && git submodule update
-    mkdir build
-    cd build
-    cmake ../ -G"Unix Makefiles"
-    sudo make install
-    cd ..
-    python -m pip install .
-
-For Windows, use `MinGW Makefiles` instead of `Unix Makefiles` when invoking CMake.
-
-----
+   git submodule update --init
+   mkdir build && cd build
+   cmake ../ -G"Unix Makefiles"
+   sudo make install
+   cd ..
+   python -m pip install .
 
 Testing
 -------
-
-You can test the local version of PyMieSim by running the following commands:
+Run the unit tests with:
 
 .. code-block:: bash
 
-    git clone https://github.com/MartinPdeS/PyMieSim.git
-    cd PyMieSim
-    pip install PyMieSim[testing]
-    pytest
-
-This will run the suite of unit tests and provide coverage details.
-
-----
-
-Google Colab
-------------
-
-In 2024, running code on your local machine is optional! You can leverage the power of Google Colab to run PyMieSim remotely. Use the provided
-`Colab notebook <https://colab.research.google.com/github/MartinPdeS/PyMieSim/blob/master/notebook.ipynb>`_ for an interactive experience.
-
-|colab|
-
-----
+   pip install PyMieSim[testing]
+   pytest
 
 Citing PyMieSim
 ---------------
-
-If PyMieSim contributes to your research, we kindly ask that you cite the following paper:
+If you use PyMieSim in academic work, please cite:
 
 .. code-block:: none
 
@@ -285,99 +191,56 @@ If PyMieSim contributes to your research, we kindly ask that you cite the follow
        doi = {10.1364/OPTCON.473102},
    }
 
-You can access the full article `here <https://opg.optica.org/optcon/fulltext.cfm?uri=optcon-2-3-520&id=526697>`_
-
-----
-
-Experimental Graphical User Interface (GUI)
--------------------------------------------
-
-Since version 1.7.0, PyMieSim offers an experimental GUI for users who prefer a graphical approach to simulations. While still under development, the GUI can be installed and accessed as follows:
-
-.. code-block:: bash
-
-    pip install PyMieSim
-    python -m  PyMieSim
-
-The GUI is not yet as robust as the core Python API, but it provides a simplified interface for generating simulations.
-
-|example_gui|
-
-----
-
-Contact Information
--------------------
-
-PyMieSim is actively developed and maintained by Martin Poinsinet de Sivry-Houle. If you're interested in contributing or have questions, feel free to reach out.
-
-Email: `martin.poinsinet.de.sivry@gmail.ca <mailto:martin.poinsinet.de.sivry@gmail.ca?subject=PyMieSim>`_
-
-Flag_0
-
-----
+Contact
+-------
+For questions or contributions, contact `martin.poinsinet.de.sivry@gmail.ca <mailto:martin.poinsinet.de.sivry@gmail.ca>`_.
 
 .. |logo| image:: https://github.com/MartinPdeS/PyMieSim/raw/master/docs/images/logo.png
     :alt: PyOptik logo
-
 .. |python| image:: https://img.shields.io/pypi/pyversions/pymiesim.svg
     :alt: Python
     :target: https://www.python.org/
-
 .. |zenodo| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.5593704.svg
     :alt: Scientific article
     :target: https://doi.org/10.5281/zenodo.4556074
-
 .. |colab| image:: https://colab.research.google.com/assets/colab-badge.svg
     :alt: Google Colab
     :target: https://colab.research.google.com/github/MartinPdeS/PyMieSim/blob/master/notebook.ipynb
-
 .. |docs| image:: https://github.com/martinpdes/pymiesim/actions/workflows/deploy_documentation.yml/badge.svg
     :target: https://martinpdes.github.io/PyMieSim/
     :alt: Documentation Status
-
-.. |PyPi| image:: https://badge.fury.io/py/PyMieSim.svg
-    :alt: PyPi version
+.. |PyPI| image:: https://badge.fury.io/py/PyMieSim.svg
+    :alt: PyPI version
     :target: https://badge.fury.io/py/PyMieSim
-
-.. |PyPi_download| image:: https://img.shields.io/pypi/dm/PyMieSim?style=plastic&label=PyPi%20downloads&labelColor=hex&color=hex
-   :alt: PyPI - Downloads
-   :target: https://pypistats.org/packages/pymiesim
-
+.. |PyPI_download| image:: https://img.shields.io/pypi/dm/PyMieSim?style=plastic&label=PyPI%20downloads&labelColor=hex&color=hex
+    :alt: PyPI downloads
+    :target: https://pypistats.org/packages/pymiesim
 .. |coverage| image:: https://raw.githubusercontent.com/MartinPdeS/PyMieSim/python-coverage-comment-action-data/badge.svg
     :alt: Unittest coverage
     :target: https://htmlpreview.github.io/?https://github.com/MartinPdeS/PyMieSim/blob/python-coverage-comment-action-data/htmlcov/index.html
-
 .. |ci/cd| image:: https://github.com/martinpdes/pymiesim/actions/workflows/deploy_coverage.yml/badge.svg
     :alt: Unittest Status
-
 .. |code_structure| image:: https://github.com/MartinPdeS/PyMieSim/raw/master/docs/images/code_structure.png
     :width: 800
     :alt: Structure of the library
-
 .. |example_gui| image:: https://github.com/MartinPdeS/PyMieSim/raw/master/docs/images/example_gui.png
     :width: 800
     :alt: Structure of the library
-
 .. |wikipedia_example| image:: https://github.com/MartinPdeS/PyMieSim/raw/master/docs/images/wikipedia_example.png
     :width: 800
     :alt: Example wikipedia
-
 .. |example_plasmon| image:: https://github.com/MartinPdeS/PyMieSim/raw/master/docs/images/plasmonic_resonances.png
     :width: 800
     :alt: Plasmonic resonances
-
 .. |example_qsca| image:: https://github.com/MartinPdeS/PyMieSim/raw/master/docs/images/Qsca_diameter.png
     :width: 800
     :alt: Qsca vs diameter
-
 .. |anaconda| image:: https://anaconda.org/martinpdes/pymiesim/badges/version.svg
-   :alt: Anaconda version
-   :target: https://anaconda.org/martinpdes/pymiesim
-
+    :alt: Anaconda version
+    :target: https://anaconda.org/martinpdes/pymiesim
 .. |anaconda_download| image:: https://anaconda.org/martinpdes/pymiesim/badges/downloads.svg
-   :alt: Anaconda downloads
-   :target: https://anaconda.org/martinpdes/pymiesim
-
+    :alt: Anaconda downloads
+    :target: https://anaconda.org/martinpdes/pymiesim
 .. |anaconda_date| image:: https://anaconda.org/martinpdes/pymiesim/badges/latest_release_relative_date.svg
     :alt: Latest release date
     :target: https://anaconda.org/martinpdes/pymiesim

{pymiesim-3.5.4.3.dist-info → pymiesim-3.6.0.dist-info}/RECORD

@@ -1,15 +1,11 @@
-pymiesim-3.5.4.3.dist-info/RECORD,,
-pymiesim-3.5.4.3.dist-info/WHEEL,sha256=I1cjv22AH4f535uJ7LXi2cB9hHnwWJJUjEcKzY-eyp0,114
-pymiesim-3.5.4.3.dist-info/METADATA,sha256=3QF4Pz6lqkM-onxvKsHs4zMk7yLajZ-4mZx9uSpp8dM,13472
-pymiesim-3.5.4.3.dist-info/licenses/LICENSE,sha256=-QSWDJghhVqbAzChmEK86liqPX_eeQFgdwlrKTLLcIA,1088
 PyMieSim/units.py,sha256=L7Trn8rW5d5AQK1_8I-XwaHGswXklupXs5wHgWQtJNQ,4224
-PyMieSim/_version.py,sha256=l0lRbKiwIHWmY6kRcxAgchNaIBGY3lnaM0_Hpo0-dOI,516
+PyMieSim/_version.py,sha256=eic-6Xs9-9wocSdGZ3Qt8lkpGHJbspTaUymbZDQfBkA,511
 PyMieSim/directories.py,sha256=ohe9qvjwN0IJ7OpZHsD7LxKYGMLr4CC7xYUGgWgw-Rg,648
-PyMieSim/__init__.py,sha256=BGzl1hTX7-KoanQDm26IRHq6AmPFzVoIFcvOMfI0wQQ,249
+PyMieSim/__init__.py,sha256=ZRdkOFRqjkVCq0qQs4DHIFnAgkdtBr19gZaq1k6bzxw,453
 PyMieSim/mesh.py,sha256=WcX_rXpWxH7WDniIqaG4rPC-pfDm4AG9ZAX-zI8GbhU,14566
 PyMieSim/polarization.py,sha256=PP8ksfWeTOnW3IOGVsAe8L183pgqe5R-KKBF99nQhaU,5487
-PyMieSim/special_functions.py,sha256=W9QQ1H3G5Yn-gdoqkApsRTOQMRWG10RgPGeV0VdKCiY,2082
-PyMieSim/__main__.py,sha256=lL91mip92hJQFpd_GYoaeppu3eaXK-vhgiTa6E_8adY,173
+PyMieSim/special_functions.py,sha256=tC82qnTSpcNv0MFy5wZsVFwhbJKy_5tO8kBullijOaY,2093
+PyMieSim/__main__.py,sha256=KO6-uwDgv95PHXlhpyIcyFX3qqddbI8HdQTsdqziz7g,237
 PyMieSim/single/__init__.py,sha256=GqpWQIaAkruQ4d1fa_fI2Qf8b5TGNXRFdkuHoe8LsTc,2207
 PyMieSim/single/representations.py,sha256=ThzTI0fQYhWC8LKHMLo17GOT3v6cSOa1n4iplNitn2A,29149
 PyMieSim/single/source/__init__.py,sha256=zCiDBYIE0TdYbtQXPgfU70DNz7ZxqtENU_NvrThJpTg,93
@@ -17,10 +13,10 @@ PyMieSim/single/source/planewave.py,sha256=J2t78fseCthUzCLqjH1KD7H669kGwiyBxPjkC
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