PyGeoFetch 2.2.0__py3-none-any.whl → 2.4.0__py3-none-any.whl

pygeofetch/__init__.py

@@ -1,5 +1,5 @@
 """
-PyGeoFetch v2.2.0 — Universal Satellite Data Pipeline.
+PyGeoFetch v2.4.0 — Universal Satellite Data Pipeline.
 
 Unified access to 22+ satellite data providers with a consistent
 Python API and CLI. Supports authentication management, federated search,
@@ -30,7 +30,7 @@ CLI::
     pygeofetch doctor
 """
 
-__version__ = "2.2.0"
+__version__ = "2.4.0"
 __author__ = "PyGeoFetch Contributors"
 __license__ = "MIT"
 

pygeofetch/cli/main.py

@@ -1,5 +1,5 @@
 """
-PyGeoFetch CLI v2.2.0 main entry point.
+PyGeoFetch CLI v2.4.0 main entry point.
 
 Full command reference:
   pygeofetch auth       — credential management
@@ -71,7 +71,7 @@ def cli(
 ) -> None:
     """
     \b
-    PyGeoFetch v2.2.0 — Universal Satellite Data Pipeline
+    PyGeoFetch v2.4.0 — Universal Satellite Data Pipeline
     ===========================================================
     Unified access to 22+ satellite data providers.
 

pygeofetch/insar/unwrap.py

@@ -356,6 +356,7 @@ class PhaseUnwrapper:
 
     def _unwrap_cli(self, igram, corr, nlooks, min_conncomp_frac, min_region_size):
         import numpy as np
+        import os
         cli_path = _ensure_snaphu_cli()
         height, width = igram.shape
         bin_dir = Path(cli_path).parent
@@ -370,6 +371,7 @@ class PhaseUnwrapper:
             igram.tofile(str(igram_path))
             corr.tofile(str(corr_path))
             nlooks_int = max(1, int(nlooks))
+            
             conf_text = f"""INFILE            igram.cpx
 INFILEFORMAT      COMPLEX_DATA
 CORRFILE          corr.cor
@@ -377,7 +379,6 @@ CORRFILEFORMAT    FLOAT_DATA
 OUTFILE           unw.unw
 OUTFILEFORMAT     FLOAT_DATA
 CONNCOMPFILE      conncomp.cc
-CONNCOMPOUTFORMAT UINT_DATA
 LINELENGTH        {width}
 STATCOSTMODE      {self._cost_mode.upper()}
 INITMETHOD        {self._init_method.upper()}
@@ -401,8 +402,44 @@ NLOOKSAZ          {nlooks_int}
             if result.returncode != 0:
                 raise RuntimeError(f"SNAPHU CLI failed with code {result.returncode}: {result.stderr}")
                 
-            unw = np.fromfile(str(unw_path), dtype=np.float32).reshape((height, width))
-            conncomp = np.fromfile(str(cc_path), dtype=np.uint32).reshape((height, width))
+            # ═══════════════════════════════════════════════════════════════
+            # SMART FILE READER (Handles Windows Port Quirks)
+            # ═══════════════════════════════════════════════════════════════
+            expected_pixels = height * width
+            
+            # 1. Read Unwrapped Phase (Usually FLOAT_DATA = 4 bytes)
+            unw_size = os.path.getsize(str(unw_path))
+            unw_dtype = np.float32 if unw_size <= expected_pixels * 4 else np.float64
+            unw = np.fromfile(str(unw_path), dtype=unw_dtype)
+            
+            # 2. Read Connected Components (Adapts to 1-byte, 2-byte, or 4-byte formats)
+            cc_size = os.path.getsize(str(cc_path))
+            if cc_size >= expected_pixels * 4:
+                cc_dtype = np.uint32
+            elif cc_size >= expected_pixels * 2:
+                cc_dtype = np.uint16
+            else:
+                cc_dtype = np.uint8  # The Windows port default
+                
+            conncomp = np.fromfile(str(cc_path), dtype=cc_dtype)
+            
+            # 3. Auto-heal the Windows "off-by-one" truncation bug
+            if conncomp.size < expected_pixels:
+                logger.warning(
+                    "SNAPHU conncomp file is %d elements, expected %d. Padding missing bytes with 0 "
+                    "(known Windows port truncation quirk).", conncomp.size, expected_pixels
+                )
+                conncomp = np.pad(conncomp, (0, expected_pixels - conncomp.size), mode='constant', constant_values=0)
+            elif conncomp.size > expected_pixels:
+                conncomp = conncomp[:expected_pixels]
+                
+            if unw.size < expected_pixels:
+                unw = np.pad(unw, (0, expected_pixels - unw.size), mode='constant', constant_values=0)
+            elif unw.size > expected_pixels:
+                unw = unw[:expected_pixels]
+
+            unw = unw.reshape((height, width))
+            conncomp = conncomp.reshape((height, width))
             
         total_pixels = height * width
         labels, counts = np.unique(conncomp, return_counts=True)
@@ -411,6 +448,7 @@ NLOOKSAZ          {nlooks_int}
             if count < min_region_size or (count / total_pixels) < min_conncomp_frac:
                 conncomp[conncomp == lbl] = 0
         return unw, conncomp.astype(np.int32)
+    
 
     def _ensure_runtime_dlls(self, bin_dir: Path):
         import shutil, zipfile, io, urllib.request
@@ -585,4 +623,59 @@ NLOOKSAZ          {nlooks_int}
 
     def _np(self):
         import numpy as np
-        return np
+        return np
+    
+
+import shutil
+import subprocess
+import logging
+import sys
+
+logger = logging.getLogger(__name__)
+
+def verify_snaphu_ready():
+    """
+    Proactively checks for snaphu availability to assure the user 
+    that no manual installation is required.
+    """
+    # 1. Check for the standard SNAPHU binary in the system PATH
+    snaphu_bin = shutil.which("snaphu")
+    if snaphu_bin:
+        # Optional: Verify the binary actually executes and isn't just a broken alias
+        try:
+            subprocess.run(
+                ["snaphu"], 
+                stdout=subprocess.DEVNULL, 
+                stderr=subprocess.DEVNULL, 
+                timeout=3
+            )
+        except Exception:
+            pass  # Snaphu without args prints usage to stderr and exits; this is expected.
+            
+        msg = f"✅ Success: snaphu binary detected at '{snaphu_bin}'. No manual installation needed."
+        print(msg)
+        logger.info(msg)
+        return True
+
+    # 2. Fallback: Check if it's available as a Python package/module
+    try:
+        import snaphu  # or pysnaphu, depending on your wrapper
+        msg = "✅ Success: snaphu Python module detected. No manual installation needed."
+        print(msg)
+        logger.info(msg)
+        return True
+    except ImportError:
+        pass
+
+    # 3. If neither is found, handle the failure gracefully
+    msg = "❌ snaphu not found in PATH or Python environment. Phase unwrapping will fail."
+    print(msg)
+    logger.warning(msg)
+    return False
+
+# --- Embed this early in your notebook or pipeline ---
+snaphu_is_ready = verify_snaphu_ready()
+
+if not snaphu_is_ready:
+    # Decide how to handle the missing dependency (see questions below)
+    pass 

pygeofetch/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "2.2.0" %}
+{% set version = "2.4.0" %}
 
 package:
   name: pygeofetch

{pygeofetch-2.2.0.dist-info → pygeofetch-2.4.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pygeofetch
-Version: 2.2.0
+Version: 2.4.0
 Summary: Universal satellite data pipeline + geospatial processing platform
 Author-email: Samuel Appiah Kubi <appiahkubis14@gmail.com>
 License: MIT License
@@ -91,8 +91,8 @@ Requires-Dist: sidecar>=0.6.0; extra == "viz"
 Requires-Dist: bokeh>=3.0.0; extra == "viz"
 Requires-Dist: seaborn>=0.12.0; extra == "viz"
 Requires-Dist: plotly>=5.14.0; extra == "viz"
-Requires-Dist: whitebox>=2.3.0; extra == "viz"
-Requires-Dist: whiteboxgui>=2.3.0; extra == "viz"
+Requires-Dist: whitebox>=2.4.0; extra == "viz"
+Requires-Dist: whiteboxgui>=2.4.0; extra == "viz"
 Requires-Dist: geemap>=0.28.0; extra == "viz"
 Requires-Dist: osmnx>=1.9.4; extra == "viz"
 Requires-Dist: contextily>=1.9.4; extra == "viz"

{pygeofetch-2.2.0.dist-info → pygeofetch-2.4.0.dist-info}/RECORD

@@ -1,11 +1,11 @@
-pygeofetch/__init__.py,sha256=jurp6U54bXzlI1qAgbCOJeKvCi8dtqTXmKp8rBQiy9Y,1990
-pygeofetch/meta.yaml,sha256=MoNY3MjPluP_qRarrEL6rVciSWxkqI5M5AcuFs0nYR8,1280
+pygeofetch/__init__.py,sha256=_bHgoiQ6l5aQR6GOuqKKte2bqg51iJPILBNzLROiZUg,1990
+pygeofetch/meta.yaml,sha256=_3LO3mdYsaEWdrrwTP6ITyr57YTTJmweff4ja5aqKmk,1280
 pygeofetch/cli/__init__.py,sha256=QZMIIHEgmjGFieucqq9fZ5uephxP9-jdu1s8Q4qqw8o,30
 pygeofetch/cli/auth_commands.py,sha256=YqbrN_BYcAYCaUIYLpSJ_VIw35tKFUiD9Kc55SWbDWg,7742
 pygeofetch/cli/config_commands.py,sha256=1Pps0HLCLPODMlM6SFV8ru3IKCDpexSTz8uKIXvIIF8,3918
 pygeofetch/cli/download_commands.py,sha256=reQ9vmA50mj1zqechjLHAOe_cjBfa1miqfWa8UiIlxU,11741
 pygeofetch/cli/index_commands.py,sha256=IoLGrsSU-lTcBitFFsg8EtucqSKZtNL-0ODj_I8Twew,10020
-pygeofetch/cli/main.py,sha256=losmzWULoADQJNRMLoM3VcEFagnVlHZwr2LapikShjc,30335
+pygeofetch/cli/main.py,sha256=ABJstgL_Z0wE7f-eSl8m6a3KEpaue54P5XG_M2W0Gac,30335
 pygeofetch/cli/pipeline_process_commands.py,sha256=OvuouT35zZlrC-7hWAJRfaY_aUNk4ScK0Fia9WVB_Gw,6904
 pygeofetch/cli/postprocess_commands.py,sha256=kof_f-kjjvYl5eqPqrcNHSOUM_qVkGdSh6-N4vcx2y4,5825
 pygeofetch/cli/preprocess_commands.py,sha256=cFp1VR03Q1pmCwiBWYmS5lXF3NOnzVAq3XgrZh3rBdU,8696
@@ -42,7 +42,7 @@ pygeofetch/insar/splitspectrum_diagnostic.py,sha256=_IlfBs__BW7Yz2RwdmWxfrOspe67
 pygeofetch/insar/stack_selection.py,sha256=FaRBXDNnLwwiXPGeALSW1AaUdpLFOEepVTgEGVfNC4o,37555
 pygeofetch/insar/synthetic.py,sha256=FazdaG_u3GR1qk8022T92W2uxDJPg7OJaUSGY0wR0pw,16248
 pygeofetch/insar/timeseries.py,sha256=jXAYCFV5-m1Zv6kErlg4CWntpOSCKE8BR5qJru6GH7Q,60155
-pygeofetch/insar/unwrap.py,sha256=v2BnxRGoIEtIivHAUsfmSOnlHuKGxz_TEpH_9FdkDuU,29663
+pygeofetch/insar/unwrap.py,sha256=zXw2WJwMQJS1gSR1L5L7DUfG1XD-Al9YZ2LnDJqJQEU,33444
 pygeofetch/insar/validate.py,sha256=BZaVvaPNllfDzoPwat0vDA4do6H5xh5Ju_g4r5YNogE,10110
 pygeofetch/insar/visualize.py,sha256=OxaQCUyRPKdikk5eQToGaXEtnN5RHEFEUMTD4O0-1iQ,8320
 pygeofetch/insar/workflow.py,sha256=8IxGgabdz9fDLoGAVrJRCdw16GP3sSDSoFPXyv1RXcg,11713
@@ -108,9 +108,9 @@ pygeofetch/utils/validators.py,sha256=f-k3mGFP4byjimyDymhPEdsz5I16jZacx1HSnwrARj
 pygeofetch/viz/__init__.py,sha256=xf2C9IL4n3bv3oxk8RYkogq7nkuNyt18V-urAoXWRQY,449
 pygeofetch/viz/map.py,sha256=vYO99NvTumCAVXVtXcEzMx_cpmH-FvSVNWl8X0PNSgE,15494
 pygeofetch/viz/plot.py,sha256=I16rdOWb80gcjYDsDvTMzuyek7QHgUNOQxY2RejBAPs,53675
-pygeofetch-2.2.0.dist-info/licenses/LICENSE,sha256=zavMyhODD6NvZTmmKFEtATrngwY4CU_NEtY7lhjxGnI,1075
-pygeofetch-2.2.0.dist-info/METADATA,sha256=uOiBAvdS4nR6X0Y8x63RAbHjJh3kg0IT4UIRE9vWqoM,43254
-pygeofetch-2.2.0.dist-info/WHEEL,sha256=YVMoNqKzERt-wjUZwJ33xBGAwnFl-4cqbYkTtWa4itE,91
-pygeofetch-2.2.0.dist-info/entry_points.txt,sha256=dHiUXLF5xNJ8vgtXZoUQNleEMQUeDPZiKQOE1tW8SDY,55
-pygeofetch-2.2.0.dist-info/top_level.txt,sha256=rOmnZargIfNk99fwVOqt6OJyJvpSTBBAYO5HU37yhHk,11
-pygeofetch-2.2.0.dist-info/RECORD,,
+pygeofetch-2.4.0.dist-info/licenses/LICENSE,sha256=zavMyhODD6NvZTmmKFEtATrngwY4CU_NEtY7lhjxGnI,1075
+pygeofetch-2.4.0.dist-info/METADATA,sha256=pDlu8XZmm0G3xTLHpf3tf5F9K2uAn1kiojbZ9651Qmk,43254
+pygeofetch-2.4.0.dist-info/WHEEL,sha256=YVMoNqKzERt-wjUZwJ33xBGAwnFl-4cqbYkTtWa4itE,91
+pygeofetch-2.4.0.dist-info/entry_points.txt,sha256=dHiUXLF5xNJ8vgtXZoUQNleEMQUeDPZiKQOE1tW8SDY,55
+pygeofetch-2.4.0.dist-info/top_level.txt,sha256=rOmnZargIfNk99fwVOqt6OJyJvpSTBBAYO5HU37yhHk,11
+pygeofetch-2.4.0.dist-info/RECORD,,