PyEvoMotion 0.1.0__py3-none-any.whl → 0.1.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- PyEvoMotion/cli.py +1 -8
- PyEvoMotion/core/base.py +83 -20
- PyEvoMotion/core/core.py +82 -38
- PyEvoMotion/core/parser.py +4 -1
- {pyevomotion-0.1.0.dist-info → pyevomotion-0.1.1.dist-info}/METADATA +72 -4
- pyevomotion-0.1.1.dist-info/RECORD +31 -0
- share/anomalous_diffusion.pdf +0 -0
- share/figUK.tsv +9949 -0
- share/figUK_plots.pdf +0 -0
- share/figUK_regression_results.json +18 -0
- share/figUK_run_args.json +13 -0
- share/figUK_stats.tsv +41 -0
- share/figUSA.tsv +9470 -0
- share/figUSA_plots.pdf +0 -0
- share/figUSA_regression_results.json +18 -0
- share/figUSA_run_args.json +13 -0
- share/figUSA_stats.tsv +34 -0
- share/figdataUK.tsv +10001 -0
- share/figdataUSA.tsv +10001 -0
- share/figure.pdf +0 -0
- share/generate_sequences_from_synthdata.py +85 -0
- share/manuscript_figure.py +457 -12
- share/synth_figure.pdf +0 -0
- share/uk_time_windows.pdf +0 -0
- share/weekly_size.pdf +0 -0
- pyevomotion-0.1.0.dist-info/RECORD +0 -13
- {pyevomotion-0.1.0.dist-info → pyevomotion-0.1.1.dist-info}/WHEEL +0 -0
- {pyevomotion-0.1.0.dist-info → pyevomotion-0.1.1.dist-info}/entry_points.txt +0 -0
share/figUK_plots.pdf
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{
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"mean number of mutations per 7D model": {
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"parameters": {
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"m": 0.19547481089767144,
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"b": 35.634115529420946
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},
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"expression": "mx + b",
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"r2": 0.9637010376538699
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},
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"scaled var number of mutations per 7D model": {
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"parameters": {
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"d": 1.9496396213906204,
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"alpha": 0.4010445329484692
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},
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"expression": "d*x^alpha",
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"r2": 0.7403444327797193
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}
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}
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{
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"seqs": "tests/data/test3/test3UK.fasta",
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"meta": "share/figdataUK.tsv",
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"out": "share/figUK",
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"delta_t": "7D",
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"show": false,
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"export_plots": true,
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"length_filter": 0,
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"kind": "total",
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"filter": null,
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"genome_positions": null,
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"date_range": "2020-10-01..2021-08-01"
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}
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share/figUK_stats.tsv
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date mean number of mutations var number of mutations size
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2020-10-29 34.515151515151516 0.8689976689976701 66
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2020-11-05 35.029411764705884 0.9620915032679709 136
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2020-11-12 35.63250883392226 1.9921309174748796 283
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2020-11-19 36.07575757575758 2.5170742962621144 198
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2020-11-26 36.37826086956522 3.6685209796848266 230
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2020-12-03 36.20704845814978 4.297649214455573 227
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2020-12-10 36.555865921787706 3.715357651440464 358
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2020-12-17 37.040625 4.709943181818182 320
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2020-12-24 37.450171821305844 6.5794051427894376 291
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2020-12-31 37.649068322981364 6.614781060737982 322
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2021-01-07 37.97329376854599 5.907022749752713 337
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2021-01-14 38.126182965299684 7.1675717765443405 317
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2021-01-21 38.33774834437086 6.476909198917517 302
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2021-01-28 38.614285714285714 6.632053251408085 280
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2021-02-04 38.891373801916934 8.481752273285828 313
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2021-02-11 38.62369337979094 7.235520576984016 287
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2021-02-18 39.12367491166078 7.97401197904921 283
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2021-02-25 39.30167597765363 6.558596623006733 358
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2021-03-04 39.56273764258555 6.239369575944036 263
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2021-03-11 39.64939024390244 8.613699932870894 328
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2021-03-18 39.625 7.909090909090907 320
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2021-03-25 40.233676975945016 8.607275743571508 291
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2021-04-01 40.11 8.345719063545154 300
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2021-04-08 40.11552346570397 6.776461047454612 277
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2021-04-15 40.674121405750796 7.5344884082903265 313
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2021-04-22 40.55882352941177 8.050626808100292 306
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2021-04-29 41.38768115942029 9.140065876152836 276
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2021-05-06 41.098684210526315 7.442374500607957 304
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2021-05-13 41.06024096385542 8.75038865137971 249
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2021-05-20 41.205479452054796 9.091653721225812 292
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2021-05-27 40.85546875 9.69275428921569 256
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2021-06-03 41.12112676056338 8.886416805920257 355
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2021-06-10 41.49 6.96472361809045 200
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2021-06-17 41.723404255319146 7.741267493457731 188
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2021-06-24 42.27860696517413 6.611990049751241 201
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2021-07-01 42.541935483870965 8.717385839966484 155
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2021-07-08 42.71875 7.475198412698421 64
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2021-07-15 43.333333333333336 8.333333333333332 39
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2021-07-22 42.32142857142857 7.822077922077916 56
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2021-07-29 41.857142857142854 15.14285714285714 7
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