Pgenlib 0.91.0__cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl

Pgenlib-0.91.0.dist-info/LICENSE

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+                   GNU LESSER GENERAL PUBLIC LICENSE
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Pgenlib-0.91.0.dist-info/METADATA

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+Metadata-Version: 2.1
+Name: Pgenlib
+Version: 0.91.0
+Summary: Python wrapper for pgenlib's basic reader and writer.
+Home-page: https://github.com/chrchang/plink-ng
+Author: Christopher Chang
+Author-email: chrchang@alumni.caltech.edu
+Project-URL: Bug Tracker, https://github.com/chrchang/plink-ng/issues
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.5
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy >=1.19.0
+
+This provides a basic Python API for pgenlib; see [python_api.txt](python_api.txt) for details.
+
+
+### Build instructions
+PyPI:
+```
+pip install 'pip>=20.3'
+pip install Pgenlib
+```
+
+To build from GitHub instead, clone the repository:
+
+```
+# clone repo
+git clone https://github.com/chrchang/plink-ng
+# go to python folder
+cd plink-ng/2.0/Python
+```
+
+Then install Cython and NumPy:
+```
+pip3 install "cython>=0.29.21" "numpy>=1.19.0"
+```
+
+and then build and install the package
+```
+python3 setup.py build_clib build_ext -i
+python3 setup.py install
+```
+
+You can test the package with `pytest`.
+
+##### Example usage:
+```
+#write a 2 sample file
+import numpy as np
+import pgenlib as pg
+
+with pg.PgenWriter("test.pgen".encode("utf-8"), 2, variant_ct=3, nonref_flags=False) as writer:
+	writer.append_alleles(np.array([0,1,1,1],dtype=np.int32))
+	writer.append_alleles(np.array([0,1,0,0],dtype=np.int32))
+	writer.append_alleles(np.array([0,0,0,0],dtype=np.int32))
+
+```
+
+See tests/test_pgenlib.py for more sophisticated examples.

Pgenlib-0.91.0.dist-info/RECORD

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+pgenlib.cpython-311-aarch64-linux-gnu.so,sha256=lYqHKfsf3lmeGjwVIfyaz0P36WB78psI2hSMN8rThjY,10209384
+Pgenlib-0.91.0.dist-info/LICENSE,sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg,7652
+Pgenlib-0.91.0.dist-info/WHEEL,sha256=ed3MsZSfP7WA4bqDh80vpiM6Sl3rlBm19tmC2fNyJxY,154
+Pgenlib-0.91.0.dist-info/top_level.txt,sha256=b-AdZgZArwifF_tVh8SP-Xncsx4YuJTaNkuQDQp3QXg,8
+Pgenlib-0.91.0.dist-info/RECORD,,
+Pgenlib-0.91.0.dist-info/METADATA,sha256=giF1I2cqFwM5eIRNDxZfDeqJPO9o0lPGgDoIR7_MsWc,1613

Pgenlib-0.91.0.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: bdist_wheel (0.43.0)
+Root-Is-Purelib: false
+Tag: cp311-cp311-manylinux_2_17_aarch64
+Tag: cp311-cp311-manylinux2014_aarch64
+

Pgenlib-0.91.0.dist-info/top_level.txt

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+pgenlib