PetThermoTools 0.2.39__py3-none-any.whl → 0.2.41__py3-none-any.whl

PetThermoTools/Barom.py

@@ -25,6 +25,42 @@ import time
 
 def path_4_saturation_multi(q, index, *, Model = None, P_bar = None, comp = None, T_maxdrop_C = None, dt_C = None, T_initial_C = None, fO2_buffer = None,
                       fO2_offset = 0.0, H2O_Sat = None, phases = None):
+    """
+    Run crystallization simulations at multiple pressures to determine pressure of mineral co-saturations using MELTS or MAGEMinCalc in parallel.
+
+    Parameters
+    ----------
+    q : multiprocessing.Queue
+        Queue object for inter-process communication (used to return results).
+    index : array-like
+        Index values to iterate over P_bar.
+    Model : str
+        Thermodynamic model to use.
+    P_bar : array-like
+        Pressures in bar at which to simulate crystallization paths.
+    comp : dict
+        Bulk composition of the starting material.
+    T_maxdrop_C : float
+        Maximum temperature drop below the liquidus and/or starting temperature in Celsius.
+    dt_C : float
+        Step size for temperature change (in °C).
+    T_initial_C : float
+        Starting temperature (°C) for simulations.
+    fO2_buffer : str, optional
+        Oxygen fugacity buffer ("FMQ" or "NNO").
+    fO2_offset : float, default 0.0
+        Offset in log units from the specified fO2 buffer.
+    H2O_Sat : bool
+        Whether the system is fluid-saturated.
+    phases : list of str
+        List of phases to monitor for saturation.
+
+    Returns
+    -------
+    None
+        Results are put in the multiprocessing queue `q` as a list: [idx, results].
+    """
+
     results = {}
     idx = []
     
@@ -83,7 +119,7 @@ def path_4_saturation_multi(q, index, *, Model = None, P_bar = None, comp = None
         idx.append(i)
 
 
-        results[f"index = {i}"] = Results
+        results[f"Run {i}"] = Results
 
         if tr is False:
             break
@@ -98,8 +134,70 @@ def mineral_cosaturation(Model="MELTSv1.0.2", cores=int(np.floor(multiprocessing
                          P_bar=np.linspace(250, 5000, 32), Fe3Fet_init=None, H2O_init=None,
                          CO2_init=None, H2O_Sat=False, T_initial_C=None, dt_C=2,
                          T_maxdrop_C=50, T_cut_C=20, find_range=True,
-                         find_min=True, fO2_buffer=None, fO2_offset=0.0, timeout = 90, multiprocesses = True):
+                         find_min=True, fO2_buffer=None, fO2_offset=0.0, timeout = 90, multi_processing = True):
+    """
+    Determines the pressure at which two or more minerals co-saturate (following the method of Gualda et al. 2014).
 
+    Parameters
+    ----------
+    Model : str
+        Thermodynamic model to use.
+    cores : int
+        Number of parallel processes to use.
+    bulk : dict
+        Bulk composition of the starting material.
+    phases : list of str
+        Mineral phases to track for saturation.
+    P_bar : array-like
+        Pressures to test in bars.
+    Fe3Fet_init : float, optional
+        Initial Fe³⁺/Fe_total ratio.
+    H2O_init : float, optional
+        Initial H₂O content in the system (wt%).
+    CO2_init : float, optional
+        Initial CO₂ content in the system (wt%).
+    H2O_Sat : bool
+        If True, run at H₂O saturation.
+    T_initial_C : float, optional
+        Starting temperature in °C.
+    dt_C : float
+        Temperature step size (°C).
+    T_maxdrop_C : float
+        Maximum temperature drop below the liquidus to search for satuartion (°C).
+    T_cut_C : float
+        Maximum acceptable difference in phase saturation temperatures for "co-saturation" (°C).
+    find_range : bool
+        If True, analyze phase co-saturation ranges.
+    find_min : bool
+        If True, determine pressure where phase saturation temperature difference is minimized.
+    fO2_buffer : str, optional
+        Oxygen fugacity buffer (e.g., "FMQ", "NNO").
+    fO2_offset : float, default 0.0
+        Offset from the fO2 buffer.
+    timeout : int
+        Timeout (in seconds) for each process.
+    multi_processing : bool
+        If True, run simulations in parallel using multiprocessing.
+
+    Returns
+    -------
+    out : dict
+        Contains either 'Output' (DataFrame of phase saturation conditions) or both 'Output' and 'CurveMin'.
+    Results : dict
+        Raw simulation outputs for each pressure step.
+    """
+    ## make sure everything is a float
+    T_initial_C = to_float(T_initial_C)
+    T_maxdrop_C = to_float(T_maxdrop_C)
+    T_cut_C = to_float(T_cut_C)
+
+    P_bar      = to_float(P_bar)
+
+    Fe3Fet_init= to_float(Fe3Fet_init)
+    H2O_init   = to_float(H2O_init)
+    CO2_init   = to_float(CO2_init)
+    fO2_offset = to_float(fO2_offset)
+    
     comp = bulk.copy()
     if H2O_Sat:
         comp['H2O_Liq'] = 20
@@ -108,7 +206,7 @@ def mineral_cosaturation(Model="MELTSv1.0.2", cores=int(np.floor(multiprocessing
                     H2O_Liq=H2O_init, CO2_Liq=CO2_init)
 
     combined_results = {}
-    if multiprocesses:
+    if multi_processing:
         index_in = np.arange(len(P_bar))
         index_out = np.array([], dtype=int)
 
@@ -254,6 +352,28 @@ def mineral_cosaturation(Model="MELTSv1.0.2", cores=int(np.floor(multiprocessing
     return out, Results
 
 def findmin(out = None, P_bar = None, T_cut_C = None):
+    """
+    Finds the minimum temperature offset between mineral saturation temperatures as a function of pressure.
+
+    Parameters
+    ----------
+    out : pd.DataFrame
+        DataFrame containing phase saturation temperatures.
+    P_bar : array-like
+        Pressure values (bar) corresponding to the rows in `out`.
+    T_cut_C : float
+        Maximum acceptable temperature difference (°C) for co-saturation to be considered valid.
+
+    Returns
+    -------
+    CurveMin : dict
+        Dictionary containing:
+            - 'P_min': Pressure of minimum saturation temperature difference.
+            - 'Res_min': Minimum temperature difference.
+            - 'y_new': Interpolated curve of temperature differences.
+            - 'P_new': Pressure array for interpolated curve.
+            - 'test': 'Pass' or 'Fail' depending on whether the result meets `T_cut_C`.
+    """
     Res = out.copy()
 
     if '3 Phase Saturation' in list(Res.keys()):
@@ -337,606 +457,612 @@ def findmin(out = None, P_bar = None, T_cut_C = None):
 
     return CurveMin
 
-
 def find_mineral_cosaturation(cores = None, Model = None, bulk = None, phases = None, P_bar = None, Fe3Fet_Liq = None, 
                               H2O_Liq = None, H2O_Sat = False, T_initial_C = None, dt_C = None, T_maxdrop_C = None, 
                               T_cut_C = None, find_range = None, find_min = None, fO2_buffer = None, fO2_offset = None):
-    '''
-    Carry out multiple calculations in parallel. Allows isobaric, polybaric and isochoric crystallisation to be performed as well as isothermal, isenthalpic or isentropic decompression. All temperature inputs/outputs are reported in degrees celcius and pressure is reported in bars.
-
-    Parameters:
-    ----------
-    cores: int
-        number of processes to run in parallel. Default will be determined using Multiprocessing.cpu_count().
-
-    Model: string
-        "MELTS" or "Holland". Dictates whether MELTS or MAGEMin calculations are performed. Default "MELTS".
-        Version of melts can be specified "MELTSv1.0.2", "MELTSv1.1.0", "MELTSv1.2.0", or "pMELTS". Default "v.1.0.2".
-
-    bulk: Dict or pd.DataFrame
-        Initial compositon for calculations. If type == Dict, the same initial composition will be used in all calculations.
-
-    phases: list
-        length 2 or 3, contains the phases of the co-saturated magma. Default = ['quartz1', 'plagioclase1', 'k-feldspar1'].
-
-    P_bar: np.ndarray
-        Calculation pressure. Length determines the number of calculations to be performed.
-
-    Fe3Fet_Liq: float or np.ndarray
-        Initial Fe 3+/total ratio.
-
-    H2O_Liq: float
-        H2O content of the initial melt phase.
-
-    T_initial_C: float
-        Starting temperature for the liquidus calculations. Default = 1200
-
-    T_maxdrop_C: float
-        Max temperature drop of the calculations. Default = 25
-
-    dt_C: float
-        Temperature change at each model step. Default = 1
-
-    T_cut_C: float
-        Temperature offset used to indicate whether the model has succeeded or failed in finding a match. Default = 10.
-
-    find_range: True/False
-        If True a new DataFrame will be included in Results, indicating all cases where the minimum offset is less than T_cut_C.
-
-    find_min: True/False
-        If True, a spline fit will be applied to the data to find the minimum point.
-
-    fO2_buffer: string
-        If the oxygen fugacity of the system is to be buffered during crystallisation/decompression, then an offset to a known buffer must be specified. Here the user can define the known buffer as either "FMQ" or "NNO".
-
-    fO2_offset: float
-        Offset from the buffer spcified in fO2_buffer (log units).
-
-    Returns:
-    ----------
-    Results: Dict
-        Dictionary containing information regarding the saturation temperature of each phase and the residuals between the different phases
-    '''
-    print('This function will be removed following the update to v0.3.0. Please switch to using the mineral_cosaturation() function')
-
-    try:
-        from meltsdynamic import MELTSdynamic
-    except:
-        Warning('alphaMELTS for Python files are not on the python path. \n Please add these files to the path running \n import sys \n sys.path.append(r"insert_your_path_to_melts_here") \n You are looking for the location of the meltsdynamic.py file')
-
-    T_step_C = dt_C
-    dt_C = T_maxdrop_C 
-
-    comp = bulk.copy()
-    if H2O_Sat is True:
-        comp['H2O_Liq'] = 20
+    print("This function has been removed following update to v0.2.40. Please switch to using the mineral_cosaturation() function")
 
-    # set default values if required
-    if Model is None:
-        Model == "MELTSv1.0.2"
+    return "This function has been removed following update to v0.2.40. Please switch to using the mineral_cosaturation() function"
 
-    if cores is None:
-        cores = multiprocessing.cpu_count()
+# def find_mineral_cosaturation(cores = None, Model = None, bulk = None, phases = None, P_bar = None, Fe3Fet_Liq = None, 
+#                               H2O_Liq = None, H2O_Sat = False, T_initial_C = None, dt_C = None, T_maxdrop_C = None, 
+#                               T_cut_C = None, find_range = None, find_min = None, fO2_buffer = None, fO2_offset = None):
+#     '''
+#     Carry out multiple calculations in parallel. Allows isobaric, polybaric and isochoric crystallisation to be performed as well as isothermal, isenthalpic or isentropic decompression. All temperature inputs/outputs are reported in degrees celcius and pressure is reported in bars.
 
-    # if comp is entered as a pandas series, it must first be converted to a dict
-    if type(comp) == pd.core.series.Series:
-        comp = comp.to_dict()
+#     Parameters:
+#     ----------
+#     cores: int
+#         number of processes to run in parallel. Default will be determined using Multiprocessing.cpu_count().
 
-    # ensure the bulk composition has the correct headers etc.
-    comp = comp_fix(Model = Model, comp = comp)
+#     Model: string
+#         "MELTS" or "Holland". Dictates whether MELTS or MAGEMin calculations are performed. Default "MELTS".
+#         Version of melts can be specified "MELTSv1.0.2", "MELTSv1.1.0", "MELTSv1.2.0", or "pMELTS". Default "v.1.0.2".
 
-    # create base array to be filled
-    if P_bar is None:
-        P_bar = np.array([-1])
-    elif type(P_bar) != np.ndarray:
-        P_bar = np.array([P_bar])
+#     bulk: Dict or pd.DataFrame
+#         Initial compositon for calculations. If type == Dict, the same initial composition will be used in all calculations.
 
-    if Fe3Fet_Liq is None:
-        Fe3Fet_Liq = np.array([-1])
-    elif type(Fe3Fet_Liq) != np.ndarray:
-        Fe3Fet_Liq = np.array([Fe3Fet_Liq])
+#     phases: list
+#         length 2 or 3, contains the phases of the co-saturated magma. Default = ['quartz1', 'plagioclase1', 'k-feldspar1'].
 
-    if H2O_Liq is None:
-        H2O_Liq = np.array([-1])
-    elif type(H2O_Liq) != np.ndarray:
-        H2O_Liq = np.array([H2O_Liq])
+#     P_bar: np.ndarray
+#         Calculation pressure. Length determines the number of calculations to be performed.
 
-    base_array = np.zeros((len(H2O_Liq),len(Fe3Fet_Liq),len(P_bar)))
+#     Fe3Fet_Liq: float or np.ndarray
+#         Initial Fe 3+/total ratio.
 
-    if P_bar[0] == -1:
-        P_bar = 1000
-    if Fe3Fet_Liq[0] == -1:
-        Fe3Fet_Liq = None
-    if H2O_Liq[0] == -1:
-        H2O_Liq = None
+#     H2O_Liq: float
+#         H2O content of the initial melt phase.
 
-    # set default values for remaining parameters
-    if T_initial_C is None:
-        T_initial_C = 1200
+#     T_initial_C: float
+#         Starting temperature for the liquidus calculations. Default = 1200
 
-    if dt_C is None:
-        dt_C = 25
+#     T_maxdrop_C: float
+#         Max temperature drop of the calculations. Default = 25
 
-    if T_step_C is None:
-        T_step_C = 1
+#     dt_C: float
+#         Temperature change at each model step. Default = 1
 
-    if T_cut_C is None:
-        T_cut_C = 10
+#     T_cut_C: float
+#         Temperature offset used to indicate whether the model has succeeded or failed in finding a match. Default = 10.
 
-    if phases is None:
-        phases = ['quartz1', 'alkali-feldspar1', 'plagioclase1']
+#     find_range: True/False
+#         If True a new DataFrame will be included in Results, indicating all cases where the minimum offset is less than T_cut_C.
 
-    # create main output dictionary
-    Results = {}
-    if len(phases) == 3:
-        List = [phases[0], phases[1], phases[2], 'T_Liq', 'H2O_melt', '3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]]
-        for l in List:
-            Results[l] = base_array.copy()
-    else:
-        List = [phases[0], phases[1], 'T_Liq', 'H2O_melt', phases[0] + ' - ' + phases[1]]
-        for l in List:
-            Results[l] = base_array.copy()
-
-    # run calculations if only one initial composition provided
-    if type(comp) == dict:
-        for i in range(np.shape(base_array)[0]):
-            # if H2O specified set H2O on each iteration
-            if H2O_Liq is not None:
-                comp['H2O_Liq'] = H2O_Liq[i]
-
-            for j in range(np.shape(base_array)[1]):
-                #if Fe3Fet specified set Fe3Fet on each iteration
-                if Fe3Fet_Liq is not None:
-                    comp['Fe3Fet_Liq'] = Fe3Fet_Liq[j]
-
-                # determine how many processes to run in parallel
-                if len(P_bar) > 1:
-                    A = len(P_bar)//cores
-                    B = len(P_bar) % cores
-
-                if A > 0:
-                    Group = np.zeros(A) + cores
-                    if B > 0:
-                        Group = np.append(Group, B)
-                else:
-                    Group = np.array([B])
+#     find_min: True/False
+#         If True, a spline fit will be applied to the data to find the minimum point.
 
-                # initialise queue
-                qs = []
-                q = Queue()
+#     fO2_buffer: string
+#         If the oxygen fugacity of the system is to be buffered during crystallisation/decompression, then an offset to a known buffer must be specified. Here the user can define the known buffer as either "FMQ" or "NNO".
 
+#     fO2_offset: float
+#         Offset from the buffer spcified in fO2_buffer (log units).
 
-                # run calculations
-                for k in range(len(Group)):
-                    ps = []
+#     Returns:
+#     ----------
+#     Results: Dict
+#         Dictionary containing information regarding the saturation temperature of each phase and the residuals between the different phases
+#     '''
+#     print('This function will be removed following the update to v0.3.0. Please switch to using the mineral_cosaturation() function')
+
+#     try:
+#         from meltsdynamic import MELTSdynamic
+#     except:
+#         Warning('alphaMELTS for Python files are not on the python path. \n Please add these files to the path running \n import sys \n sys.path.append(r"insert_your_path_to_melts_here") \n You are looking for the location of the meltsdynamic.py file')
+
+#     T_step_C = dt_C
+#     dt_C = T_maxdrop_C 
 
-                    for kk in range(int(cores*k), int(cores*k + Group[k])):
-                        p = Process(target = satTemperature, args = (q, kk),
-                                    kwargs = {'Model': Model, 'comp': comp,
-                                    'T_initial_C': T_initial_C, 'T_step_C': T_step_C,
-                                    'dt_C': dt_C, 'P_bar': P_bar[kk], 'phases': phases,
-                                    'H2O_Liq': H2O_Liq, 'fO2_buffer': fO2_buffer, 'fO2_offset': fO2_offset})
+#     comp = bulk.copy()
+#     if H2O_Sat is True:
+#         comp['H2O_Liq'] = 20
 
-                        ps.append(p)
-                        p.start()
+#     # set default values if required
+#     if Model is None:
+#         Model == "MELTSv1.0.2"
+
+#     if cores is None:
+#         cores = multiprocessing.cpu_count()
+
+#     # if comp is entered as a pandas series, it must first be converted to a dict
+#     if type(comp) == pd.core.series.Series:
+#         comp = comp.to_dict()
 
-                    TIMEOUT = 300
+#     # ensure the bulk composition has the correct headers etc.
+#     comp = comp_fix(Model = Model, comp = comp)
 
-                    start = time.time()
-                    for p in ps:
-                        if time.time() - start < TIMEOUT - 10:
-                            try:
-                                ret = q.get(timeout = TIMEOUT - (time.time()-start) + 10)
-                            except:
-                                ret = []
-                        else:
-                            try:
-                                ret = q.get(timeout = 10)
-                            except:
-                                ret = []
-
-                        qs.append(ret)
-
-                    TIMEOUT = 5
-                    start = time.time()
-                    for p in ps:
-                        if p.is_alive():
-                            while time.time() - start <= TIMEOUT:
-                                if not p.is_alive():
-                                    p.join()
-                                    p.terminate()
-                                    break
-                                time.sleep(.1)
-                            else:
-                                p.terminate()
-                                p.join(5)
-                        else:
-                            p.join()
-                            p.terminate()
-
-
-                    # for p in ps:
-                    #     try:
-                    #         ret = q.get(timeout = 180)
-                    #     except:
-                    #         ret = []
-                    #
-                    #     qs.append(ret)
-                    #
-                    # TIMEOUT = 20
-                    # start = time.time()
-                    # for p in ps:
-                    #     if p.is_alive():
-                    #         time.sleep(.1)
-                    #         while time.time() - start <= TIMEOUT:
-                    #             if not p.is_alive():
-                    #                 p.join()
-                    #                 p.terminate()
-                    #                 break
-                    #             time.sleep(.1)
-                    #         else:
-                    #             p.terminate()
-                    #             p.join(5)
-                    #     else:
-                    #         p.join()
-                    #         p.terminate()
-
-                # # extract results
-                for kk in range(len(qs)):
-                    if len(qs[kk]) > 0:
-                        Res, index = qs[kk]
-                        for l in Results:
-                            if l != 'sat_surface':
-                                Results[l][i,j,index] = Res[l]
-
-        # covert any empty values to nan
-        for l in Results:
-            if l != 'sat_surface':
-                Results[l][np.where(Results[l] == 0.0)] = np.nan
-
-        if find_min is not None:
-            if H2O_Liq is not None:
-                Results = findMinimum(Results = Results, P_bar = P_bar, T_cut_C = T_cut_C, H2O_Liq = H2O_Liq, Fe3Fet_Liq = Fe3Fet_Liq, phases = phases)
-            else:
-                Results = findMinimum(Results = Results, P_bar = P_bar, T_cut_C = T_cut_C, H2O_Liq = H2O_Liq, Fe3Fet_Liq = Fe3Fet_Liq, phases = phases)
-
-        if find_range is not None:
-            Results['range'] = np.zeros(np.shape(Results[l]))
-            if len(phases) == 3:
-                Results['range'][np.where(Results['3 Phase Saturation'] <= T_cut_C)] = True
-                Results['range'][np.where(Results['3 Phase Saturation'] > T_cut_C)] = False
-            else:
-                Results['range'][np.where(Results[phases[0] + ' - ' + phases[1]] <= T_cut_C)] = True
-                Results['range'][np.where(Results[phases[0] + ' - ' + phases[1]] > T_cut_C)] = False
+#     # create base array to be filled
+#     if P_bar is None:
+#         P_bar = np.array([-1])
+#     elif type(P_bar) != np.ndarray:
+#         P_bar = np.array([P_bar])
+
+#     if Fe3Fet_Liq is None:
+#         Fe3Fet_Liq = np.array([-1])
+#     elif type(Fe3Fet_Liq) != np.ndarray:
+#         Fe3Fet_Liq = np.array([Fe3Fet_Liq])
+
+#     if H2O_Liq is None:
+#         H2O_Liq = np.array([-1])
+#     elif type(H2O_Liq) != np.ndarray:
+#         H2O_Liq = np.array([H2O_Liq])
+
+#     base_array = np.zeros((len(H2O_Liq),len(Fe3Fet_Liq),len(P_bar)))
+
+#     if P_bar[0] == -1:
+#         P_bar = 1000
+#     if Fe3Fet_Liq[0] == -1:
+#         Fe3Fet_Liq = None
+#     if H2O_Liq[0] == -1:
+#         H2O_Liq = None
+
+#     # set default values for remaining parameters
+#     if T_initial_C is None:
+#         T_initial_C = 1200
+
+#     if dt_C is None:
+#         dt_C = 25
+
+#     if T_step_C is None:
+#         T_step_C = 1
+
+#     if T_cut_C is None:
+#         T_cut_C = 10
+
+#     if phases is None:
+#         phases = ['quartz1', 'alkali-feldspar1', 'plagioclase1']
+
+#     # create main output dictionary
+#     Results = {}
+#     if len(phases) == 3:
+#         List = [phases[0], phases[1], phases[2], 'T_Liq', 'H2O_melt', '3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]]
+#         for l in List:
+#             Results[l] = base_array.copy()
+#     else:
+#         List = [phases[0], phases[1], 'T_Liq', 'H2O_melt', phases[0] + ' - ' + phases[1]]
+#         for l in List:
+#             Results[l] = base_array.copy()
+
+#     # run calculations if only one initial composition provided
+#     if type(comp) == dict:
+#         for i in range(np.shape(base_array)[0]):
+#             # if H2O specified set H2O on each iteration
+#             if H2O_Liq is not None:
+#                 comp['H2O_Liq'] = H2O_Liq[i]
+
+#             for j in range(np.shape(base_array)[1]):
+#                 #if Fe3Fet specified set Fe3Fet on each iteration
+#                 if Fe3Fet_Liq is not None:
+#                     comp['Fe3Fet_Liq'] = Fe3Fet_Liq[j]
+
+#                 # determine how many processes to run in parallel
+#                 if len(P_bar) > 1:
+#                     A = len(P_bar)//cores
+#                     B = len(P_bar) % cores
+
+#                 if A > 0:
+#                     Group = np.zeros(A) + cores
+#                     if B > 0:
+#                         Group = np.append(Group, B)
+#                 else:
+#                     Group = np.array([B])
+
+#                 # initialise queue
+#                 qs = []
+#                 q = Queue()
+
+
+#                 # run calculations
+#                 for k in range(len(Group)):
+#                     ps = []
+
+#                     for kk in range(int(cores*k), int(cores*k + Group[k])):
+#                         p = Process(target = satTemperature, args = (q, kk),
+#                                     kwargs = {'Model': Model, 'comp': comp,
+#                                     'T_initial_C': T_initial_C, 'T_step_C': T_step_C,
+#                                     'dt_C': dt_C, 'P_bar': P_bar[kk], 'phases': phases,
+#                                     'H2O_Liq': H2O_Liq, 'fO2_buffer': fO2_buffer, 'fO2_offset': fO2_offset})
+
+#                         ps.append(p)
+#                         p.start()
+
+#                     TIMEOUT = 300
+
+#                     start = time.time()
+#                     for p in ps:
+#                         if time.time() - start < TIMEOUT - 10:
+#                             try:
+#                                 ret = q.get(timeout = TIMEOUT - (time.time()-start) + 10)
+#                             except:
+#                                 ret = []
+#                         else:
+#                             try:
+#                                 ret = q.get(timeout = 10)
+#                             except:
+#                                 ret = []
+
+#                         qs.append(ret)
+
+#                     TIMEOUT = 5
+#                     start = time.time()
+#                     for p in ps:
+#                         if p.is_alive():
+#                             while time.time() - start <= TIMEOUT:
+#                                 if not p.is_alive():
+#                                     p.join()
+#                                     p.terminate()
+#                                     break
+#                                 time.sleep(.1)
+#                             else:
+#                                 p.terminate()
+#                                 p.join(5)
+#                         else:
+#                             p.join()
+#                             p.terminate()
+
+
+#                     # for p in ps:
+#                     #     try:
+#                     #         ret = q.get(timeout = 180)
+#                     #     except:
+#                     #         ret = []
+#                     #
+#                     #     qs.append(ret)
+#                     #
+#                     # TIMEOUT = 20
+#                     # start = time.time()
+#                     # for p in ps:
+#                     #     if p.is_alive():
+#                     #         time.sleep(.1)
+#                     #         while time.time() - start <= TIMEOUT:
+#                     #             if not p.is_alive():
+#                     #                 p.join()
+#                     #                 p.terminate()
+#                     #                 break
+#                     #             time.sleep(.1)
+#                     #         else:
+#                     #             p.terminate()
+#                     #             p.join(5)
+#                     #     else:
+#                     #         p.join()
+#                     #         p.terminate()
+
+#                 # # extract results
+#                 for kk in range(len(qs)):
+#                     if len(qs[kk]) > 0:
+#                         Res, index = qs[kk]
+#                         for l in Results:
+#                             if l != 'sat_surface':
+#                                 Results[l][i,j,index] = Res[l]
+
+#         # covert any empty values to nan
+#         for l in Results:
+#             if l != 'sat_surface':
+#                 Results[l][np.where(Results[l] == 0.0)] = np.nan
+
+#         if find_min is not None:
+#             if H2O_Liq is not None:
+#                 Results = findMinimum(Results = Results, P_bar = P_bar, T_cut_C = T_cut_C, H2O_Liq = H2O_Liq, Fe3Fet_Liq = Fe3Fet_Liq, phases = phases)
+#             else:
+#                 Results = findMinimum(Results = Results, P_bar = P_bar, T_cut_C = T_cut_C, H2O_Liq = H2O_Liq, Fe3Fet_Liq = Fe3Fet_Liq, phases = phases)
+
+#         if find_range is not None:
+#             Results['range'] = np.zeros(np.shape(Results[l]))
+#             if len(phases) == 3:
+#                 Results['range'][np.where(Results['3 Phase Saturation'] <= T_cut_C)] = True
+#                 Results['range'][np.where(Results['3 Phase Saturation'] > T_cut_C)] = False
+#             else:
+#                 Results['range'][np.where(Results[phases[0] + ' - ' + phases[1]] <= T_cut_C)] = True
+#                 Results['range'][np.where(Results[phases[0] + ' - ' + phases[1]] > T_cut_C)] = False
 
     
 
-    return Results
-
-def findMinimum(Results = None, P_bar = None, T_cut_C = None, H2O_Liq = None, Fe3Fet_Liq = None, phases = None):
-    '''
-    Take the results of SatPress and search for the minimum point using a spline fit.
-    '''
-    if T_cut_C is None:
-        T_cut_C = 10
-
-    if H2O_Liq is None and Fe3Fet_Liq is None:
-        if '3 Phase Saturation' in list(Results.keys()):
-            Minimum = {'3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]}
-            CurveMin = {}
-            for m in Minimum:
-                if len(Results[m][0,0,:][~np.isnan(Results[m][0,0,:])]) > 2:
-                    y = Results[m][0,0,:][(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]
-                    x = P_bar[(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]
-
-                    try:
-                        y_new = interpolate.UnivariateSpline(x, y, k = 5)
-                    except:
-                        y_new = interpolate.UnivariateSpline(x, y, k = 2)
-
-                    P_new = np.linspace(P_bar[np.where(P_bar == np.nanmin(P_bar[(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]))], P_bar[np.where(P_bar == np.nanmax(P_bar[(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]))], 200)
-
-                    NewMin = np.nanmin(y_new(P_new))
-                    P_min = P_new[np.where(y_new(P_new) == NewMin)][0]
-                    if NewMin < T_cut_C:
-                        Test = 'Pass'
-                    else:
-                        Test = 'Fail'
-
-                    CurveMin[m] = {'P_min': P_min, 'Res_min': NewMin, 'y_new': y_new(P_new), 'P_new': P_new, 'test': Test}
-                else:
-                    y_new = np.nan
-                    P_new = np.nan
-                    NewMin = np.nan
-                    P_min = np.nan
-                    Test = 'Fail'
-                    CurveMin[m] = {'P_min': P_min, 'Res_min': NewMin, 'y_new': y_new, 'P_new': P_new, 'test': Test}
-
-            Results['CurveMin'] = CurveMin
-        else:
-            m = phases[0] + ' - ' + phases[1]
-            if len(Results[m][0,0,:][~np.isnan(Results[m][0,0,:])]) > 2:
-                y = Results[m][0,0,:][np.where(~np.isnan(Results[m][0,0,:]))]
-                x = P_bar[np.where(~np.isnan(Results[m][0,0,:]))]
-
-                try:
-                    y_new = interpolate.UnivariateSpline(x, y, k=5)
-                except:
-                    y_new = interpolate.UnivariateSpline(x, y, k = 2)
-
-                P_new = np.linspace(P_bar[np.where(P_bar == np.nanmin(P_bar[np.where(~np.isnan(Results[m][0,0,:]))]))], P_bar[np.where(P_bar == np.nanmax(P_bar[np.where(~np.isnan(Results[m][0,0,:]))]))], 200)
-
-                NewMin = np.nanmin(y_new(P_new))
-                P_min = P_new[np.where(y_new(P_new) == NewMin)][0]
-                if NewMin < T_cut_C:
-                    Test = 'Pass'
-                else:
-                    Test = 'Fail'
-            else:
-                y_new = np.nan
-                P_new = np.nan
-                NewMin = np.nan
-                P_min = np.nan
-                Test = 'Fail'
-
-            Results['CurveMin'] = {phases[0] + ' - ' + phases[1]: {'P_min': P_min, 'Res_min': NewMin, 'y_new': y_new, 'P_new': P_new, 'test': Test}}
-
-    if H2O_Liq is not None and Fe3Fet_Liq is None:
-        if '3 Phase Saturation' in list(Results.keys()):
-            X, Y = np.meshgrid(P_bar, H2O_Liq)
-            Y = Results['H2O_melt'][:,0,:].copy()
-
-            Minimum = {'3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]}
-            CurveMin = {}
-            for m in Minimum:
-                if len(Results[m][:,0,:][~np.isnan(Results[m][:,0,:])]) > 4:
-                    Res = Results[m][:,0,:].copy()
-                    Res[np.where(Res > T_cut_C*2)] = np.nan
-                    for i in range(len(H2O_Liq)):
-                        Res[i, :][np.where(Results['H2O_melt'][i,0,:] < 0.99*np.nanmax(Results['H2O_melt'][i,0,:]))] = np.nan
-
-                    A = Res.copy()
-                    Res[np.where(Res > T_cut_C)] = np.nan
-                    X, Y = np.meshgrid(P_bar, H2O_Liq)
-                    Y = Results['H2O_melt'][:,0,:]
-
-                    try:
-                        z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 3, ky = 3)
-                    except:
-                        z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 2, ky = 2)
-
-                    H2O_new = np.linspace(Y[np.where(Res == np.nanmin(Res))] - (H2O_Liq[1]-H2O_Liq[0]),
-                                        Y[np.where(Res == np.nanmin(Res))] + (H2O_Liq[1]-H2O_Liq[0]), 20)
-                    P_new = np.linspace(X[np.where(Res == np.nanmin(Res))] - (P_bar[1]-P_bar[0]),
-                                        X[np.where(Res == np.nanmin(Res))] + (P_bar[1]-P_bar[0]), 20)
-
-                    X_new, Y_new = np.meshgrid(P_new, H2O_new)
-                    x = X[~np.isnan(A)].flatten()
-                    y = Y[~np.isnan(A)].flatten()
-
-                    MyPoly = MultiPoint(list(zip(x, y))).convex_hull
-
-                    points = list(zip(X_new.flatten(), Y_new.flatten()))
-                    Include = np.zeros(len(X_new.flatten()))
-                    for i in range(len(points)):
-                        p = Point(points[i])
-                        Include[i] = p.within(MyPoly)
-
-                    YayNay = Include.reshape(X_new.shape)
-                    x_new = X_new[np.where(YayNay == True)].flatten()
-                    y_new = Y_new[np.where(YayNay == True)].flatten()
-                    Res_min = np.nanmin(z_new(x_new, y_new, grid = False))
-                    P_min = x_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
-                    H2O_min = y_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
-                    if Res_min < T_cut_C:
-                        Test = 'Pass'
-                    else:
-                        Test = 'Fail'
-
-                    CurveMin[m] = {'Res_min': Res_min, 'P_min': P_min[0], 'H2O_min': H2O_min[0], 'z_new': z_new, 'test': Test}
-                else:
-                    CurveMin[m] = {'Res_min': np.nan, 'P_min': np.nan, 'H2O_min': np.nan, 'z_new': np.nan, 'test': 'Fail'}
-
-            Results['CurveMin'] = CurveMin
-
-    if H2O_Liq is not None and Fe3Fet_Liq is not None:
-        if '3 Phase Saturation' in list(Results.keys()):
-            X, Y = np.meshgrid(P_bar, H2O_Liq)
-            Y = Results['H2O_melt'][:,0,:].copy()
-
-            Minimum = {'3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]}
-            CurveMin = {}
-            for m in Minimum:
-                Res_min_save = 50
-                for w in range(len(Fe3Fet_Liq)):
-                    if len(Results[m][:,w,:][~np.isnan(Results[m][:,w,:])]) > 4:
-                        Res = Results[m][:,w,:].copy()
-                        Res[np.where(Res > T_cut_C*2)] = np.nan
-                        for i in range(len(H2O_Liq)):
-                            Res[i, :][np.where(Results['H2O_melt'][i,w,:] < 0.99*np.nanmax(Results['H2O_melt'][i,w,:]))] = np.nan
-
-                        A = Res.copy()
-                        X, Y = np.meshgrid(P_bar, H2O_Liq)
-                        Y = Results['H2O_melt'][:,w,:].copy()
-
-                        try:
-                            z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 3, ky = 3)
-                        except:
-                            z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 2, ky = 2)
-
-                        H2O_new = np.linspace(Y[np.where(Res == np.nanmin(Res))] - (H2O_Liq[1]-H2O_Liq[0]),
-                                            Y[np.where(Res == np.nanmin(Res))] + (H2O_Liq[1]-H2O_Liq[0]), 20)
-                        P_new = np.linspace(X[np.where(Res == np.nanmin(Res))] - (P_bar[1]-P_bar[0]),
-                                            X[np.where(Res == np.nanmin(Res))] + (P_bar[1]-P_bar[0]), 20)
-
-                        X_new, Y_new = np.meshgrid(P_new, H2O_new)
-                        x = X[~np.isnan(A)].flatten()
-                        y = Y[~np.isnan(A)].flatten()
-
-                        MyPoly = MultiPoint(list(zip(x, y))).convex_hull
-
-                        points = list(zip(X_new.flatten(), Y_new.flatten()))
-                        Include = np.zeros(len(X_new.flatten()))
-                        for i in range(len(points)):
-                            p = Point(points[i])
-                            Include[i] = p.within(MyPoly)
-
-                        YayNay = Include.reshape(X_new.shape)
-                        x_new = X_new[np.where(YayNay == True)].flatten()
-                        y_new = Y_new[np.where(YayNay == True)].flatten()
-                        Res_min = np.nanmin(z_new(x_new, y_new, grid = False))
-                        P_min = x_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
-                        H2O_min = y_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
-                        if Res_min < T_cut_C:
-                            Test = 'Pass'
-                        else:
-                            Test = 'Fail'
-
-                        if Res_min < Res_min_save:
-                            Res_min_save = Res_min
-                            CurveMin[m] = {'Res_min': Res_min, 'P_min': P_min[0], 'H2O_min': H2O_min[0], 'z_new': z_new, 'Fe3Fet_Liq': Fe3Fet_Liq[w], 'test': Test}
-
-            Results['CurveMin'] = CurveMin
-
-
-    return Results
-
-def polymin(P_bar = None, Res = None):
-    '''
-    Finds the minimum residual temperature using a 2nd degree polynomial.
-    '''
-    arr = np.sort(Res)
-    Ind = np.where(Res == arr[0])[0][0]
-
-    if P_bar[Ind] == np.nanmax(P_bar):
-        p = np.array([0,1,0])
-        p_min = np.array([P_bar[Ind]])
-    elif P_bar[Ind] == np.nanmin(P_bar):
-        p = np.array([0,1,0])
-        p_min = np.array([P_bar[Ind]])
-    else:
-        p = np.polyfit(P_bar[np.array([Ind-1, Ind, Ind+1])],Res[np.array([Ind-1, Ind, Ind+1])],2)
-
-        x = np.linspace(np.nanmin(P_bar),np.nanmax(P_bar),501)
-        y = p[0]*x**2 + p[1]*x + p[2]
-
-        p_min = x[np.where(y == np.nanmin(y))]
-
-    return p, p_min
-
-def satTemperature(q, index, *, Model = None, comp = None, phases = None, T_initial_C = None, T_step_C = None, dt_C = None, P_bar = None, H2O_Liq = None, fO2_buffer = None, fO2_offset = None):
-    '''
-    Crystallisation calculations to be performed in parallel. Calculations may be either isobaric or isochoric.
-
-    Parameters:
-    ----------
-    q: Multiprocessing Queue instance
-        Queue instance to record the output variables
-
-    index: int
-        index of the calculation in the master code (e.g., position within a for loop) to aid indexing results after calculations are complete.
-
-    Model: string
-        "MELTS" or "Holland". Dictates whether MELTS or MAGEMin calculations are performed. Default "MELTS".
-        Version of melts can be specified "MELTSv1.0.2", "MELTSv1.1.0", "MELTSv1.2.0", or "pMELTS". Default "v.1.0.2".
-
-    comp: Dict
-        Initial compositon for calculations.
-
-    T_initial_C: float
-        Initial guess for the liquidus temperature.
-
-    T_step_C: float
-        The temperature drop at each step of the calculation.
-
-    dt_C: float
-        Total temperature drop allowed duringmodel runs.
-
-    P_bar: float
-         Specifies the pressure of calculation (bar).
-
-    Returns:
-    ----------
-    Results: Dict
-        Dict containing a series of floats that represent the saturation temperature and residual temperature for each calculation.
-
-    index: int
-        index of the calculation
-
-    '''
-
-    Results = {}
-    if "MELTS" in Model:
-
-        try:
-            Results = phaseSat_MELTS(Model = Model, comp = comp, phases = phases, T_initial_C = T_initial_C, T_step_C = T_step_C, dt_C = dt_C, P_bar = P_bar, H2O_Liq = H2O_Liq, fO2_buffer = fO2_buffer, fO2_offset = fO2_offset)
-        except:
-            Results = {phases[0]: np.nan, phases[1]: np.nan, phases[2]: np.nan, 'T_Liq': np.nan, 'H2O_melt': np.nan}
-            if len(phases) == 2:
-                del Results[phases[2]]
-
-        if len(phases) == 3:
-            Res = ['3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]]
-            for R in Res:
-                Results[R] = np.nan
-
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
-                Results['3 Phase Saturation'] = np.nanmax(np.array([abs(Results[phases[0]] - Results[phases[1]]), abs(Results[phases[0]] - Results[phases[2]]), abs(Results[phases[1]] - Results[phases[2]])]))
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
-                Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[2]]):
-                Results[phases[0] + ' - ' + phases[2]] = abs(Results[phases[0]] - Results[phases[2]])
-            if ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
-                Results[phases[1] + ' - ' + phases[2]] = abs(Results[phases[1]] - Results[phases[2]])
-        else:
-            Results[phases[0] + ' - ' + phases[1]] = np.nan
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
-                Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
-
-        q.put([Results, index])
-        return
-
-    if Model == "Holland":
-        import pyMAGEMINcalc as MM
-        Results = {phases[0]: np.nan, phases[1]: np.nan, phases[2]: np.nan, 'T_Liq': np.nan, 'H2O_melt': np.nan}
-        if len(phases) == 2:
-            del Results[phases[2]]
-
-        #try:
-        Result = MM.path(comp = comp, phases = phases, T_min_C = dt_C, dt_C = T_step_C, P_bar = P_bar, find_liquidus = True)
-        #Result = stich(Result, Model = Model)
-
-        for i in range(len(phases)):
-            try:
-                Results[phases[i]] = Result['Conditions']['T_C'][Result[phases[i]+'_prop']['mass'] > 0.0].values[0]
-                print(Results[phases[i]])
-            except:
-                Results[phases[i]] = np.nan
-
-        Results['T_Liq'] = Result['Conditions']['T_C'].values[0]
-        Results['H2O_melt'] = Result['liq']['H2O'].values[0]
-
-        if len(phases) == 3:
-            Res = ['3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]]
-            for R in Res:
-                Results[R] = np.nan
-
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
-                Results['3 Phase Saturation'] = np.nanmax(np.array([abs(Results[phases[0]] - Results[phases[1]]), abs(Results[phases[0]] - Results[phases[2]]), abs(Results[phases[1]] - Results[phases[2]])]))
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
-                Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[2]]):
-                Results[phases[0] + ' - ' + phases[2]] = abs(Results[phases[0]] - Results[phases[2]])
-            if ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
-                Results[phases[1] + ' - ' + phases[2]] = abs(Results[phases[1]] - Results[phases[2]])
-        else:
-            Results[phases[0] + ' - ' + phases[1]] = np.nan
-            if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
-                Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
+#     return Results
+
+# def findMinimum(Results = None, P_bar = None, T_cut_C = None, H2O_Liq = None, Fe3Fet_Liq = None, phases = None):
+#     '''
+#     Take the results of SatPress and search for the minimum point using a spline fit.
+#     '''
+#     if T_cut_C is None:
+#         T_cut_C = 10
+
+#     if H2O_Liq is None and Fe3Fet_Liq is None:
+#         if '3 Phase Saturation' in list(Results.keys()):
+#             Minimum = {'3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]}
+#             CurveMin = {}
+#             for m in Minimum:
+#                 if len(Results[m][0,0,:][~np.isnan(Results[m][0,0,:])]) > 2:
+#                     y = Results[m][0,0,:][(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]
+#                     x = P_bar[(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]
+
+#                     try:
+#                         y_new = interpolate.UnivariateSpline(x, y, k = 5)
+#                     except:
+#                         y_new = interpolate.UnivariateSpline(x, y, k = 2)
+
+#                     P_new = np.linspace(P_bar[np.where(P_bar == np.nanmin(P_bar[(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]))], P_bar[np.where(P_bar == np.nanmax(P_bar[(np.where(~np.isnan(Results[m][0,0,:]))) and (np.where(Results[m][0,0,:] < T_cut_C))]))], 200)
+
+#                     NewMin = np.nanmin(y_new(P_new))
+#                     P_min = P_new[np.where(y_new(P_new) == NewMin)][0]
+#                     if NewMin < T_cut_C:
+#                         Test = 'Pass'
+#                     else:
+#                         Test = 'Fail'
+
+#                     CurveMin[m] = {'P_min': P_min, 'Res_min': NewMin, 'y_new': y_new(P_new), 'P_new': P_new, 'test': Test}
+#                 else:
+#                     y_new = np.nan
+#                     P_new = np.nan
+#                     NewMin = np.nan
+#                     P_min = np.nan
+#                     Test = 'Fail'
+#                     CurveMin[m] = {'P_min': P_min, 'Res_min': NewMin, 'y_new': y_new, 'P_new': P_new, 'test': Test}
+
+#             Results['CurveMin'] = CurveMin
+#         else:
+#             m = phases[0] + ' - ' + phases[1]
+#             if len(Results[m][0,0,:][~np.isnan(Results[m][0,0,:])]) > 2:
+#                 y = Results[m][0,0,:][np.where(~np.isnan(Results[m][0,0,:]))]
+#                 x = P_bar[np.where(~np.isnan(Results[m][0,0,:]))]
+
+#                 try:
+#                     y_new = interpolate.UnivariateSpline(x, y, k=5)
+#                 except:
+#                     y_new = interpolate.UnivariateSpline(x, y, k = 2)
+
+#                 P_new = np.linspace(P_bar[np.where(P_bar == np.nanmin(P_bar[np.where(~np.isnan(Results[m][0,0,:]))]))], P_bar[np.where(P_bar == np.nanmax(P_bar[np.where(~np.isnan(Results[m][0,0,:]))]))], 200)
+
+#                 NewMin = np.nanmin(y_new(P_new))
+#                 P_min = P_new[np.where(y_new(P_new) == NewMin)][0]
+#                 if NewMin < T_cut_C:
+#                     Test = 'Pass'
+#                 else:
+#                     Test = 'Fail'
+#             else:
+#                 y_new = np.nan
+#                 P_new = np.nan
+#                 NewMin = np.nan
+#                 P_min = np.nan
+#                 Test = 'Fail'
+
+#             Results['CurveMin'] = {phases[0] + ' - ' + phases[1]: {'P_min': P_min, 'Res_min': NewMin, 'y_new': y_new, 'P_new': P_new, 'test': Test}}
+
+#     if H2O_Liq is not None and Fe3Fet_Liq is None:
+#         if '3 Phase Saturation' in list(Results.keys()):
+#             X, Y = np.meshgrid(P_bar, H2O_Liq)
+#             Y = Results['H2O_melt'][:,0,:].copy()
+
+#             Minimum = {'3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]}
+#             CurveMin = {}
+#             for m in Minimum:
+#                 if len(Results[m][:,0,:][~np.isnan(Results[m][:,0,:])]) > 4:
+#                     Res = Results[m][:,0,:].copy()
+#                     Res[np.where(Res > T_cut_C*2)] = np.nan
+#                     for i in range(len(H2O_Liq)):
+#                         Res[i, :][np.where(Results['H2O_melt'][i,0,:] < 0.99*np.nanmax(Results['H2O_melt'][i,0,:]))] = np.nan
+
+#                     A = Res.copy()
+#                     Res[np.where(Res > T_cut_C)] = np.nan
+#                     X, Y = np.meshgrid(P_bar, H2O_Liq)
+#                     Y = Results['H2O_melt'][:,0,:]
+
+#                     try:
+#                         z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 3, ky = 3)
+#                     except:
+#                         z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 2, ky = 2)
+
+#                     H2O_new = np.linspace(Y[np.where(Res == np.nanmin(Res))] - (H2O_Liq[1]-H2O_Liq[0]),
+#                                         Y[np.where(Res == np.nanmin(Res))] + (H2O_Liq[1]-H2O_Liq[0]), 20)
+#                     P_new = np.linspace(X[np.where(Res == np.nanmin(Res))] - (P_bar[1]-P_bar[0]),
+#                                         X[np.where(Res == np.nanmin(Res))] + (P_bar[1]-P_bar[0]), 20)
+
+#                     X_new, Y_new = np.meshgrid(P_new, H2O_new)
+#                     x = X[~np.isnan(A)].flatten()
+#                     y = Y[~np.isnan(A)].flatten()
+
+#                     MyPoly = MultiPoint(list(zip(x, y))).convex_hull
+
+#                     points = list(zip(X_new.flatten(), Y_new.flatten()))
+#                     Include = np.zeros(len(X_new.flatten()))
+#                     for i in range(len(points)):
+#                         p = Point(points[i])
+#                         Include[i] = p.within(MyPoly)
+
+#                     YayNay = Include.reshape(X_new.shape)
+#                     x_new = X_new[np.where(YayNay == True)].flatten()
+#                     y_new = Y_new[np.where(YayNay == True)].flatten()
+#                     Res_min = np.nanmin(z_new(x_new, y_new, grid = False))
+#                     P_min = x_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
+#                     H2O_min = y_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
+#                     if Res_min < T_cut_C:
+#                         Test = 'Pass'
+#                     else:
+#                         Test = 'Fail'
+
+#                     CurveMin[m] = {'Res_min': Res_min, 'P_min': P_min[0], 'H2O_min': H2O_min[0], 'z_new': z_new, 'test': Test}
+#                 else:
+#                     CurveMin[m] = {'Res_min': np.nan, 'P_min': np.nan, 'H2O_min': np.nan, 'z_new': np.nan, 'test': 'Fail'}
+
+#             Results['CurveMin'] = CurveMin
+
+#     if H2O_Liq is not None and Fe3Fet_Liq is not None:
+#         if '3 Phase Saturation' in list(Results.keys()):
+#             X, Y = np.meshgrid(P_bar, H2O_Liq)
+#             Y = Results['H2O_melt'][:,0,:].copy()
+
+#             Minimum = {'3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]}
+#             CurveMin = {}
+#             for m in Minimum:
+#                 Res_min_save = 50
+#                 for w in range(len(Fe3Fet_Liq)):
+#                     if len(Results[m][:,w,:][~np.isnan(Results[m][:,w,:])]) > 4:
+#                         Res = Results[m][:,w,:].copy()
+#                         Res[np.where(Res > T_cut_C*2)] = np.nan
+#                         for i in range(len(H2O_Liq)):
+#                             Res[i, :][np.where(Results['H2O_melt'][i,w,:] < 0.99*np.nanmax(Results['H2O_melt'][i,w,:]))] = np.nan
+
+#                         A = Res.copy()
+#                         X, Y = np.meshgrid(P_bar, H2O_Liq)
+#                         Y = Results['H2O_melt'][:,w,:].copy()
+
+#                         try:
+#                             z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 3, ky = 3)
+#                         except:
+#                             z_new = interpolate.SmoothBivariateSpline(X[np.where(~np.isnan(A) & ~np.isnan(Y))], Y[np.where(~np.isnan(A) & ~np.isnan(Y))], A[np.where(~np.isnan(A) & ~np.isnan(Y))], kx = 2, ky = 2)
+
+#                         H2O_new = np.linspace(Y[np.where(Res == np.nanmin(Res))] - (H2O_Liq[1]-H2O_Liq[0]),
+#                                             Y[np.where(Res == np.nanmin(Res))] + (H2O_Liq[1]-H2O_Liq[0]), 20)
+#                         P_new = np.linspace(X[np.where(Res == np.nanmin(Res))] - (P_bar[1]-P_bar[0]),
+#                                             X[np.where(Res == np.nanmin(Res))] + (P_bar[1]-P_bar[0]), 20)
+
+#                         X_new, Y_new = np.meshgrid(P_new, H2O_new)
+#                         x = X[~np.isnan(A)].flatten()
+#                         y = Y[~np.isnan(A)].flatten()
+
+#                         MyPoly = MultiPoint(list(zip(x, y))).convex_hull
+
+#                         points = list(zip(X_new.flatten(), Y_new.flatten()))
+#                         Include = np.zeros(len(X_new.flatten()))
+#                         for i in range(len(points)):
+#                             p = Point(points[i])
+#                             Include[i] = p.within(MyPoly)
+
+#                         YayNay = Include.reshape(X_new.shape)
+#                         x_new = X_new[np.where(YayNay == True)].flatten()
+#                         y_new = Y_new[np.where(YayNay == True)].flatten()
+#                         Res_min = np.nanmin(z_new(x_new, y_new, grid = False))
+#                         P_min = x_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
+#                         H2O_min = y_new[np.where(z_new(x_new, y_new, grid = False) == Res_min)]
+#                         if Res_min < T_cut_C:
+#                             Test = 'Pass'
+#                         else:
+#                             Test = 'Fail'
+
+#                         if Res_min < Res_min_save:
+#                             Res_min_save = Res_min
+#                             CurveMin[m] = {'Res_min': Res_min, 'P_min': P_min[0], 'H2O_min': H2O_min[0], 'z_new': z_new, 'Fe3Fet_Liq': Fe3Fet_Liq[w], 'test': Test}
+
+#             Results['CurveMin'] = CurveMin
+
+
+#     return Results
+
+# def polymin(P_bar = None, Res = None):
+#     '''
+#     Finds the minimum residual temperature using a 2nd degree polynomial.
+#     '''
+#     arr = np.sort(Res)
+#     Ind = np.where(Res == arr[0])[0][0]
+
+#     if P_bar[Ind] == np.nanmax(P_bar):
+#         p = np.array([0,1,0])
+#         p_min = np.array([P_bar[Ind]])
+#     elif P_bar[Ind] == np.nanmin(P_bar):
+#         p = np.array([0,1,0])
+#         p_min = np.array([P_bar[Ind]])
+#     else:
+#         p = np.polyfit(P_bar[np.array([Ind-1, Ind, Ind+1])],Res[np.array([Ind-1, Ind, Ind+1])],2)
+
+#         x = np.linspace(np.nanmin(P_bar),np.nanmax(P_bar),501)
+#         y = p[0]*x**2 + p[1]*x + p[2]
+
+#         p_min = x[np.where(y == np.nanmin(y))]
+
+#     return p, p_min
+
+# def satTemperature(q, index, *, Model = None, comp = None, phases = None, T_initial_C = None, T_step_C = None, dt_C = None, P_bar = None, H2O_Liq = None, fO2_buffer = None, fO2_offset = None):
+#     '''
+#     Crystallisation calculations to be performed in parallel. Calculations may be either isobaric or isochoric.
+
+#     Parameters:
+#     ----------
+#     q: Multiprocessing Queue instance
+#         Queue instance to record the output variables
+
+#     index: int
+#         index of the calculation in the master code (e.g., position within a for loop) to aid indexing results after calculations are complete.
+
+#     Model: string
+#         "MELTS" or "Holland". Dictates whether MELTS or MAGEMin calculations are performed. Default "MELTS".
+#         Version of melts can be specified "MELTSv1.0.2", "MELTSv1.1.0", "MELTSv1.2.0", or "pMELTS". Default "v.1.0.2".
+
+#     comp: Dict
+#         Initial compositon for calculations.
+
+#     T_initial_C: float
+#         Initial guess for the liquidus temperature.
+
+#     T_step_C: float
+#         The temperature drop at each step of the calculation.
+
+#     dt_C: float
+#         Total temperature drop allowed duringmodel runs.
+
+#     P_bar: float
+#          Specifies the pressure of calculation (bar).
+
+#     Returns:
+#     ----------
+#     Results: Dict
+#         Dict containing a series of floats that represent the saturation temperature and residual temperature for each calculation.
+
+#     index: int
+#         index of the calculation
+
+#     '''
+
+#     Results = {}
+#     if "MELTS" in Model:
+
+#         try:
+#             Results = phaseSat_MELTS(Model = Model, comp = comp, phases = phases, T_initial_C = T_initial_C, T_step_C = T_step_C, dt_C = dt_C, P_bar = P_bar, H2O_Liq = H2O_Liq, fO2_buffer = fO2_buffer, fO2_offset = fO2_offset)
+#         except:
+#             Results = {phases[0]: np.nan, phases[1]: np.nan, phases[2]: np.nan, 'T_Liq': np.nan, 'H2O_melt': np.nan}
+#             if len(phases) == 2:
+#                 del Results[phases[2]]
+
+#         if len(phases) == 3:
+#             Res = ['3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]]
+#             for R in Res:
+#                 Results[R] = np.nan
+
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
+#                 Results['3 Phase Saturation'] = np.nanmax(np.array([abs(Results[phases[0]] - Results[phases[1]]), abs(Results[phases[0]] - Results[phases[2]]), abs(Results[phases[1]] - Results[phases[2]])]))
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
+#                 Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[2]]):
+#                 Results[phases[0] + ' - ' + phases[2]] = abs(Results[phases[0]] - Results[phases[2]])
+#             if ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
+#                 Results[phases[1] + ' - ' + phases[2]] = abs(Results[phases[1]] - Results[phases[2]])
+#         else:
+#             Results[phases[0] + ' - ' + phases[1]] = np.nan
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
+#                 Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
+
+#         q.put([Results, index])
+#         return
+
+#     if Model == "Holland":
+#         import pyMAGEMINcalc as MM
+#         Results = {phases[0]: np.nan, phases[1]: np.nan, phases[2]: np.nan, 'T_Liq': np.nan, 'H2O_melt': np.nan}
+#         if len(phases) == 2:
+#             del Results[phases[2]]
+
+#         #try:
+#         Result = MM.path(comp = comp, phases = phases, T_min_C = dt_C, dt_C = T_step_C, P_bar = P_bar, find_liquidus = True)
+#         #Result = stich(Result, Model = Model)
+
+#         for i in range(len(phases)):
+#             try:
+#                 Results[phases[i]] = Result['Conditions']['T_C'][Result[phases[i]+'_prop']['mass'] > 0.0].values[0]
+#                 print(Results[phases[i]])
+#             except:
+#                 Results[phases[i]] = np.nan
+
+#         Results['T_Liq'] = Result['Conditions']['T_C'].values[0]
+#         Results['H2O_melt'] = Result['liq']['H2O'].values[0]
+
+#         if len(phases) == 3:
+#             Res = ['3 Phase Saturation', phases[0] + ' - ' + phases[1], phases[0] + ' - ' + phases[2], phases[1] + ' - ' + phases[2]]
+#             for R in Res:
+#                 Results[R] = np.nan
+
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
+#                 Results['3 Phase Saturation'] = np.nanmax(np.array([abs(Results[phases[0]] - Results[phases[1]]), abs(Results[phases[0]] - Results[phases[2]]), abs(Results[phases[1]] - Results[phases[2]])]))
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
+#                 Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[2]]):
+#                 Results[phases[0] + ' - ' + phases[2]] = abs(Results[phases[0]] - Results[phases[2]])
+#             if ~np.isnan(Results[phases[1]]) and ~np.isnan(Results[phases[2]]):
+#                 Results[phases[1] + ' - ' + phases[2]] = abs(Results[phases[1]] - Results[phases[2]])
+#         else:
+#             Results[phases[0] + ' - ' + phases[1]] = np.nan
+#             if ~np.isnan(Results[phases[0]]) and ~np.isnan(Results[phases[1]]):
+#                 Results[phases[0] + ' - ' + phases[1]] = abs(Results[phases[0]] - Results[phases[1]])
         
-        q.put([Results, index])
-        #except:
-        #    q.put([Results, index])
-        return
+#         q.put([Results, index])
+#         #except:
+#         #    q.put([Results, index])
+#         return