ONE-api 3.2.0__py3-none-any.whl → 3.3.0__py3-none-any.whl

one/__init__.py

@@ -1,2 +1,2 @@
 """The Open Neurophysiology Environment (ONE) API."""
-__version__ = '3.2.0'
+__version__ = '3.3.0'

one/alf/path.py

@@ -27,6 +27,7 @@ ALFPath properties return empty str instead of None if ALF part isn't present..
 """
 import os
 import pathlib
+from functools import cached_property
 from collections import OrderedDict
 from datetime import datetime
 from typing import Union, Optional, Iterable
@@ -844,17 +845,17 @@ class PureALFPath(pathlib.PurePath):  # py3.12 supports direct subclassing
         """
         return filename_parts(self.name, assert_valid=False, as_dict=as_dict)
 
-    @property
+    @cached_property
     def dataset_name_parts(self):
         """tuple of str: the dataset name parts, with empty strings for missing parts."""
         return tuple(p or '' for p in self.parse_alf_name(as_dict=False))
 
-    @property
+    @cached_property
     def session_parts(self):
         """tuple of str: the session path parts, with empty strings for missing parts."""
         return tuple(p or '' for p in session_path_parts(self, assert_valid=False))
 
-    @property
+    @cached_property
     def alf_parts(self):
         """tuple of str: the full ALF path parts, with empty strings for missing parts."""
         return tuple(p or '' for p in self.parse_alf_path(as_dict=False))

one/api.py

@@ -6,6 +6,7 @@ import logging
 from weakref import WeakMethod
 from datetime import datetime, timedelta
 from functools import lru_cache, partial
+from itertools import islice
 from inspect import unwrap
 from pathlib import Path, PurePosixPath
 from typing import Any, Union, Optional, List
@@ -28,7 +29,7 @@ import one.webclient as wc
 import one.alf.io as alfio
 import one.alf.path as alfiles
 import one.alf.exceptions as alferr
-from one.alf.path import ALFPath
+from one.alf.path import ALFPath, ensure_alf_path
 from .alf.cache import (
     make_parquet_db, load_tables, remove_table_files, merge_tables,
     default_cache, cast_index_object)
@@ -2020,9 +2021,26 @@ class OneAlyx(One):
 
         """
         query_type = query_type or self.mode
-        if query_type == 'local' and 'insertions' not in self._cache.keys():
-            raise NotImplementedError('Converting probe IDs required remote connection')
-        rec = self.alyx.rest('insertions', 'read', id=str(pid))
+        if query_type == 'local':  # and 'insertions' not in self._cache.keys():
+            if 'insertions' not in self._cache.keys():
+                raise NotImplementedError('Converting probe IDs requires remote connection')
+            else:
+                # If local, use the cache table
+                pid = UUID(pid) if isinstance(pid, str) else pid
+                try:
+                    rec = self._cache['insertions'].loc[pd.IndexSlice[:, pid], 'name']
+                    (eid, _), name = next(rec.items())
+                    return eid, name
+                except KeyError:
+                    return None, None
+        try:
+            rec = self.alyx.rest('insertions', 'read', id=pid)
+        except requests.exceptions.HTTPError as ex:
+            if ex.response.status_code == 404:
+                _logger.error(f'Probe {pid} not found in Alyx')
+                return None, None
+            raise ex
+        self._update_insertions_table([rec])
         return UUID(rec['session']), rec['name']
 
     def eid2pid(self, eid, query_type=None, details=False, **kwargs) -> (UUID, str, list):
@@ -2063,15 +2081,33 @@ class OneAlyx(One):
         """
         query_type = query_type or self.mode
         if query_type == 'local' and 'insertions' not in self._cache.keys():
-            raise NotImplementedError('Converting probe IDs required remote connection')
+            raise NotImplementedError('Converting to probe ID requires remote connection')
         eid = self.to_eid(eid)  # Ensure we have a UUID str
         if not eid:
             return (None,) * (3 if details else 2)
-        recs = self.alyx.rest('insertions', 'list', session=eid, **kwargs)
-        pids = [UUID(x['id']) for x in recs]
-        labels = [x['name'] for x in recs]
+        if query_type == 'local':
+            try:  # If local, use the cache table
+                rec = self._cache['insertions'].loc[(eid,), :]
+                pids, names = map(list, zip(*rec.sort_values('name')['name'].items()))
+                if details:
+                    rec['session'] = str(eid)
+                    session_info = self._cache['sessions'].loc[eid].to_dict()
+                    session_info['date'] = session_info['date'].isoformat()
+                    session_info['projects'] = session_info['projects'].split(',')
+                    rec['session_info'] = session_info
+                    # Convert to list of dicts after casting UUIDs to strings
+                    recs = cast_index_object(rec, str).reset_index().to_dict('records')
+                    return pids, names, recs
+                return pids, names
+            except KeyError:
+                return (None,) * (3 if details else 2)
+
+        if recs := self.alyx.rest('insertions', 'list', session=eid, **kwargs):
+            self._update_insertions_table(recs)
+        pids = [UUID(x['id']) for x in recs] or None
+        labels = [x['name'] for x in recs] or None
         if details:
-            return pids, labels, recs
+            return pids, labels, recs or None
         else:
             return pids, labels
 
@@ -2757,10 +2793,11 @@ class OneAlyx(One):
             return [unwrapped(self, e, query_type='remote') for e in eid]
 
         # if it wasn't successful, query Alyx
-        ses = self.alyx.rest('sessions', 'list', django=f'pk,{str(eid)}')
+        ses = self.alyx.rest('sessions', 'list', id=eid)
         if len(ses) == 0:
             return None
         else:
+            self._update_sessions_table(ses)
             return ALFPath(self.cache_dir).joinpath(
                 ses[0]['lab'], 'Subjects', ses[0]['subject'], ses[0]['start_time'][:10],
                 str(ses[0]['number']).zfill(3))
@@ -2788,7 +2825,7 @@ class OneAlyx(One):
                 eid_list.append(self.path2eid(p))
             return eid_list
         # else ensure the path ends with mouse, date, number
-        path_obj = ALFPath(path_obj)
+        path_obj = ensure_alf_path(path_obj)
 
         # try the cached info to possibly avoid hitting database
         mode = query_type or self.mode
@@ -2969,26 +3006,40 @@ class OneAlyx(One):
             [Errno 404] Remote session not found on Alyx.
 
         """
+        def process(d, root=self.cache_dir):
+            """Returns dict in similar format to One.search output."""
+            det_fields = ['subject', 'start_time', 'number', 'lab', 'projects',
+                          'url', 'task_protocol', 'local_path']
+            out = {k: v for k, v in d.items() if k in det_fields}
+            out['projects'] = ','.join(out['projects'])
+            out['date'] = datetime.fromisoformat(out['start_time']).date()
+            out['local_path'] = session_record2path(out, root)
+            return out
+
         if (query_type or self.mode) == 'local':
             return super().get_details(eid, full=full)
         # If eid is a list of eIDs recurse through list and return the results
-        if isinstance(eid, (list, util.LazyId)):
-            details_list = []
-            for p in eid:
-                details_list.append(self.get_details(p, full=full))
-            return details_list
-        # load all details
-        dets = self.alyx.rest('sessions', 'read', eid)
+        eids = ensure_list(eid)
+        details = dict.fromkeys(map(str, eids), None)  # create map to skip duplicates
         if full:
-            return dets
-        # If it's not full return the normal output like from a one.search
-        det_fields = ['subject', 'start_time', 'number', 'lab', 'projects',
-                      'url', 'task_protocol', 'local_path']
-        out = {k: v for k, v in dets.items() if k in det_fields}
-        out['projects'] = ','.join(out['projects'])
-        out.update({'local_path': self.eid2path(eid),
-                    'date': datetime.fromisoformat(out['start_time']).date()})
-        return out
+            for e in details:
+                # check for duplicates
+                details[e] = self.alyx.rest('sessions', 'read', id=e)
+                session, datasets = ses2records(details[e])
+                merge_tables(
+                    self._cache, sessions=session, datasets=datasets.copy(),
+                    origin=self.alyx.base_url)
+            details = [details[str(e)].copy() for e in eids]
+        else:
+            # batch to ensure the list is not too long for the GET request
+            iterator = iter(details.keys())
+            while batch := tuple(islice(iterator, 50)):
+                ret = self.alyx.rest('sessions', 'list', django=f'pk__in,{batch}')
+                details.update({d['id']: d for d in ret})
+            self._update_sessions_table(details.values())
+            details = [process(details[str(e)]) for e in eids]
+        # Return either a single dict or a list of dicts depending on the input type
+        return (details if isinstance(eid, (list, util.LazyId)) else details[0])
 
 
 def _setup(**kwargs):

one/remote/globus.py

@@ -642,7 +642,7 @@ class Globus(DownloadClient):
         recursive : bool
             If true, transfer the contents of nested directories (NB: all data_paths must be
             directories).
-        **kwargs
+        kwargs
             See Globus.transfer_data.
 
         Returns
@@ -715,7 +715,7 @@ class Globus(DownloadClient):
         ----------
         client_name : str
             Parameter profile name to set up e.g. 'default', 'admin'.
-        **kwargs
+        kwargs
             Optional Globus constructor arguments.
 
         Returns
@@ -937,7 +937,7 @@ class Globus(DownloadClient):
         recursive : bool
             If true, transfer the contents of nested directories (NB: all data_paths must be
             directories).
-        **kwargs
+        kwargs
             See globus_sdk.TransferData.
 
         Returns
@@ -996,7 +996,7 @@ class Globus(DownloadClient):
         recursive : bool
             If true, delete the contents of nested directories (NB: all data_paths must be
             directories).
-        **kwargs
+        kwargs
             See globus_sdk.DeleteData.
 
         Returns
@@ -1108,7 +1108,7 @@ class Globus(DownloadClient):
             is a UUID, the path must be absolute.
         timeout : int
             Maximum time in seconds to wait for the task to complete.
-        **kwargs
+        kwargs
             Optional arguments for globus_sdk.TransferData.
 
         Returns

one/tests/fixtures/rest_responses/f530d6022f61cdc9e38cc66beb3cb71f3003c9a1

@@ -1 +1 @@
-[{"id": "b529f2d8-cdae-4d59-aba2-cbd1b5572e36", "session": "fc737f3c-2a57-4165-9763-905413e7e341", "model": "3B2", "session_info": {"subject": "KS055", "start_time": "2021-05-10T17:47:13.833000", "number": 1, "lab": "cortexlab", "id": "fc737f3c-2a57-4165-9763-905413e7e341", "task_protocol": "_iblrig_tasks_ephysChoiceWorld6.4.2"}, "datasets": [{"id": "00ca1432-216f-409b-987d-230febcbd2fb", "name": "_spikeglx_sync.polarities.probe00.npy", "dataset_type": "_spikeglx_sync.polarities", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_sync.polarities.probe00.00ca1432-216f-409b-987d-230febcbd2fb.npy", "url": "https://alyx.internationalbrainlab.org/datasets/00ca1432-216f-409b-987d-230febcbd2fb", "file_size": 103688, "hash": "97b306ac1ec7a2b6525bc48aaa22816f", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "013c8cfc-6f5e-4310-8251-e20a0553cca2", "name": "_iblqc_ephysSpectralDensityAP.freqs.npy", "dataset_type": "_iblqc_ephysSpectralDensity.freqs", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_iblqc_ephysSpectralDensityAP.freqs.013c8cfc-6f5e-4310-8251-e20a0553cca2.npy", "url": "https://alyx.internationalbrainlab.org/datasets/013c8cfc-6f5e-4310-8251-e20a0553cca2", "file_size": 2180, "hash": "bc51178bb8cc3ad418608d2918c7c78f", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "02bafcb8-9322-4eb8-a809-31f1f128d1e0", "name": "templates.waveformsChannels.npy", "dataset_type": "templates.waveformsChannels", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/templates.waveformsChannels.02bafcb8-9322-4eb8-a809-31f1f128d1e0.npy", "url": "https://alyx.internationalbrainlab.org/datasets/02bafcb8-9322-4eb8-a809-31f1f128d1e0", "file_size": 9472, "hash": "2db2a1e9662f017ecc15a252d53b51dd", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "14a88391-4607-4a3f-99f6-740d1fe5fec0", "name": "clusters.channels.npy", "dataset_type": "clusters.channels", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/clusters.channels.14a88391-4607-4a3f-99f6-740d1fe5fec0.npy", "url": "https://alyx.internationalbrainlab.org/datasets/14a88391-4607-4a3f-99f6-740d1fe5fec0", "file_size": 712, "hash": "73b85640a56e8ce952348fc45bc4c9f9", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "1ac5d125-75f0-4bf6-90f0-385895dff860", "name": "_spikeglx_sync.channels.probe00.npy", "dataset_type": "_spikeglx_sync.channels", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_sync.channels.probe00.1ac5d125-75f0-4bf6-90f0-385895dff860.npy", "url": "https://alyx.internationalbrainlab.org/datasets/1ac5d125-75f0-4bf6-90f0-385895dff860", "file_size": 103688, "hash": "36ed90b857cc0f05a4a20d5cf6e21219", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "1b3a11b0-7bc3-4664-aeb8-1f4f7068619f", "name": "_spikeglx_ephysData_g0_t0.imec0.sync.npy", "dataset_type": "ephysData.raw.sync", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_ephysData_g0_t0.imec0.sync.1b3a11b0-7bc3-4664-aeb8-1f4f7068619f.npy", "url": "https://alyx.internationalbrainlab.org/datasets/1b3a11b0-7bc3-4664-aeb8-1f4f7068619f", "file_size": 5328, "hash": "36d4b63d2f3ef07b9974cc37c35427ea", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "1f8646d5-e7d2-4ebb-9ade-6640d63d6fbe", "name": "_spikeglx_ephysData_g0_t0.imec0.lf.meta", "dataset_type": "ephysData.raw.meta", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_ephysData_g0_t0.imec0.lf.1f8646d5-e7d2-4ebb-9ade-6640d63d6fbe.meta", "url": "https://alyx.internationalbrainlab.org/datasets/1f8646d5-e7d2-4ebb-9ade-6640d63d6fbe", "file_size": 13977, "hash": "cf17a71416c130336c7fb5c8c32f8229", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "28701221-3afb-4927-87f3-d7bf091c2e3b", "name": "_spikeglx_ephysData_g0_t0.imec0.ap.meta", "dataset_type": "ephysData.raw.meta", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_ephysData_g0_t0.imec0.ap.28701221-3afb-4927-87f3-d7bf091c2e3b.meta", "url": "https://alyx.internationalbrainlab.org/datasets/28701221-3afb-4927-87f3-d7bf091c2e3b", "file_size": 17790, "hash": "06b2e74a1845a546a9fdf93ee451a430", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "358c5705-c7c0-4c1d-9765-054a12bebff5", "name": "clusters.peakToTrough.npy", "dataset_type": "clusters.peakToTrough", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/clusters.peakToTrough.358c5705-c7c0-4c1d-9765-054a12bebff5.npy", "url": "https://alyx.internationalbrainlab.org/datasets/358c5705-c7c0-4c1d-9765-054a12bebff5", "file_size": 712, "hash": "4b0af8205106f9908712be8dd09b6bb9", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "3d7ec876-2c18-4291-89d9-50b27e5cd7a9", "name": "_spikeglx_ephysData_g0_t0.imec0.wiring.json", "dataset_type": "ephysData.raw.wiring", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_ephysData_g0_t0.imec0.wiring.3d7ec876-2c18-4291-89d9-50b27e5cd7a9.json", "url": "https://alyx.internationalbrainlab.org/datasets/3d7ec876-2c18-4291-89d9-50b27e5cd7a9", "file_size": 95, "hash": "10e76721a218051fb13db1e38c576904", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "3d986a6b-7894-485e-9e98-70c378ae099f", "name": "templates.amps.npy", "dataset_type": "templates.amps", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/templates.amps.3d986a6b-7894-485e-9e98-70c378ae099f.npy", "url": "https://alyx.internationalbrainlab.org/datasets/3d986a6b-7894-485e-9e98-70c378ae099f", "file_size": 712, "hash": "0367214c967f0585ab5211b415d68dce", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "40681e35-2214-4fea-9052-c9d49fbafb53", "name": "_iblqc_ephysSpectralDensityLF.power.npy", "dataset_type": "_iblqc_ephysSpectralDensity.power", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_iblqc_ephysSpectralDensityLF.power.40681e35-2214-4fea-9052-c9d49fbafb53.npy", "url": "https://alyx.internationalbrainlab.org/datasets/40681e35-2214-4fea-9052-c9d49fbafb53", "file_size": 790148, "hash": "b40fad59af7a4746eec7d2f5221e6bec", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "4f5aed90-9225-43bb-88c7-922b497bf2dd", "name": "spikes.depths.npy", "dataset_type": "spikes.depths", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/spikes.depths.4f5aed90-9225-43bb-88c7-922b497bf2dd.npy", "url": "https://alyx.internationalbrainlab.org/datasets/4f5aed90-9225-43bb-88c7-922b497bf2dd", "file_size": 40882112, "hash": "21281e17e501dbe95d46a8a1d32b225d", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "552c984d-776b-4f88-88a0-33e4a678124a", "name": "spikes.times.npy", "dataset_type": "spikes.times", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/spikes.times.552c984d-776b-4f88-88a0-33e4a678124a.npy", "url": "https://alyx.internationalbrainlab.org/datasets/552c984d-776b-4f88-88a0-33e4a678124a", "file_size": 40882112, "hash": "8789128af75e26de920caad65faf9cee", "version": 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"raw_ephys_data/probe00"}, {"id": "46613958-87ad-4e3c-a52f-ae966ea5c78f", "name": "spikes.clusters.npy", "dataset_type": "spikes.clusters", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/spikes.clusters.46613958-87ad-4e3c-a52f-ae966ea5c78f.npy", "url": "https://alyx.internationalbrainlab.org/datasets/46613958-87ad-4e3c-a52f-ae966ea5c78f", "file_size": 20441120, "hash": "643d61e8090274082a0a50876bb3adad", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "61ac731e-b625-4acb-8c4e-c478f0ce34c2", "name": "_phy_spikes_subset.spikes.npy", "dataset_type": "_phy_spikes_subset.spikes", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/_phy_spikes_subset.spikes.61ac731e-b625-4acb-8c4e-c478f0ce34c2.npy", "url": "https://alyx.internationalbrainlab.org/datasets/61ac731e-b625-4acb-8c4e-c478f0ce34c2", "file_size": 109528, "hash": "4cbeec3977d644dbfb964f0a7b352566", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "79fec68a-081e-4412-8ead-cfc97342c615", "name": "_iblqc_ephysTimeRmsLF.rms.npy", "dataset_type": "_iblqc_ephysTimeRms.rms", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_iblqc_ephysTimeRmsLF.rms.79fec68a-081e-4412-8ead-cfc97342c615.npy", "url": "https://alyx.internationalbrainlab.org/datasets/79fec68a-081e-4412-8ead-cfc97342c615", "file_size": 3041628, "hash": "5926ad41de90fa3c82a80c8049f9c44f", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "87b238f7-c035-4337-9901-dabd7712e0d7", "name": "channels.localCoordinates.npy", "dataset_type": "channels.localCoordinates", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/channels.localCoordinates.87b238f7-c035-4337-9901-dabd7712e0d7.npy", "url": "https://alyx.internationalbrainlab.org/datasets/87b238f7-c035-4337-9901-dabd7712e0d7", "file_size": 6064, "hash": "bc74f49f33ec0f7545ebc03f0490bdf6", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "96b6a8b6-e0ed-402e-8c84-128ef714c555", "name": "spikes.amps.npy", "dataset_type": "spikes.amps", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/spikes.amps.96b6a8b6-e0ed-402e-8c84-128ef714c555.npy", "url": "https://alyx.internationalbrainlab.org/datasets/96b6a8b6-e0ed-402e-8c84-128ef714c555", "file_size": 40882112, "hash": "f9dc6c5648c90750a3fbc9cfa2a9e7da", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "a7736716-d438-45a5-99de-91582bd44312", "name": "_spikeglx_sync.times.probe00.npy", "dataset_type": "_spikeglx_sync.times", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_sync.times.probe00.a7736716-d438-45a5-99de-91582bd44312.npy", "url": "https://alyx.internationalbrainlab.org/datasets/a7736716-d438-45a5-99de-91582bd44312", "file_size": 103688, "hash": "f01602383f1b49516ca5f527831cdaf7", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "a991f6d2-160a-4a70-9e9c-3237119311d5", "name": "_phy_spikes_subset.channels.npy", "dataset_type": "_phy_spikes_subset.channels", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/_phy_spikes_subset.channels.a991f6d2-160a-4a70-9e9c-3237119311d5.npy", "url": "https://alyx.internationalbrainlab.org/datasets/a991f6d2-160a-4a70-9e9c-3237119311d5", "file_size": 1750528, "hash": "52a7d08d765c8c203b425537d045e56f", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "bf600ea7-8b58-4dc7-a49d-d752d18e46b2", "name": "clusters.amps.npy", "dataset_type": "clusters.amps", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/alf/probe00/clusters.amps.bf600ea7-8b58-4dc7-a49d-d752d18e46b2.npy", "url": "https://alyx.internationalbrainlab.org/datasets/bf600ea7-8b58-4dc7-a49d-d752d18e46b2", "file_size": 712, "hash": "ff103a20f9c42dbea9a8f9c6110d7d65", "version": "4991ceba3cd423df027bc0d77e2314e9d7909e04", "collection": "alf/probe00"}, {"id": "c198723d-3174-428b-9559-8456c47ea4b5", "name": "_spikeglx_ephysData_g0_t0.imec0.ap.cbin", "dataset_type": "ephysData.raw.ap", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_spikeglx_ephysData_g0_t0.imec0.ap.c198723d-3174-428b-9559-8456c47ea4b5.cbin", "url": "https://alyx.internationalbrainlab.org/datasets/c198723d-3174-428b-9559-8456c47ea4b5", "file_size": 17283416064, "hash": "e44f7a26b879e04b9c4204a9b881683e", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "ca5b7d13-9e5f-4091-9be2-8af392188e49", "name": "_iblqc_ephysSpectralDensityLF.freqs.npy", "dataset_type": "_iblqc_ephysSpectralDensity.freqs", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_iblqc_ephysSpectralDensityLF.freqs.ca5b7d13-9e5f-4091-9be2-8af392188e49.npy", "url": "https://alyx.internationalbrainlab.org/datasets/ca5b7d13-9e5f-4091-9be2-8af392188e49", "file_size": 2180, "hash": "f3ffe62ed24d19c0979861b4308a9d00", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}, {"id": "e006237b-8879-4917-8677-00df2247cef9", "name": "_iblqc_ephysTimeRmsAP.timestamps.npy", "dataset_type": "_iblqc_ephysTimeRms.timestamps", "data_url": "https://ibl.flatironinstitute.org/cortexlab/Subjects/KS055/2021-05-10/001/raw_ephys_data/probe00/_iblqc_ephysTimeRmsAP.timestamps.e006237b-8879-4917-8677-00df2247cef9.npy", "url": "https://alyx.internationalbrainlab.org/datasets/e006237b-8879-4917-8677-00df2247cef9", "file_size": 6052, "hash": "0916111d7628659be0c2fc9b803d94bc", "version": "1.10.0", "collection": "raw_ephys_data/probe00"}], "name": "probe00", "json": {"qc": "NOT_SET", "extended_qc": {}}, "serial": "18194814141", "auto_datetime": "2021-05-12T02:13:12.169076"}, "3000-05-13T17:40:28.145258"]

one/webclient.py

@@ -109,7 +109,7 @@ def _cache_response(method):
             response will not be used on subsequent calls.  If None, the default expiry is applied.
         clobber : bool
             If True any existing cached response is overwritten.
-        **kwargs
+        kwargs
             Keyword arguments for applying to wrapped function.
 
         Returns
@@ -123,7 +123,7 @@ def _cache_response(method):
         if args[0].__name__ != mode and mode != '*':
             return method(alyx_client, *args, **kwargs)
         # Check cache
-        rest_cache = alyx_client.cache_dir.joinpath('.rest')
+        rest_cache = alyx_client.rest_cache_dir
         sha1 = hashlib.sha1()
         sha1.update(bytes(args[1], 'utf-8'))
         name = sha1.hexdigest()
@@ -577,6 +577,7 @@ class AlyxClient:
         # The default expiry is overridden by the `expires` kwarg.  If False, the caching is
         # turned off.
         self.default_expiry = timedelta(minutes=5)
+        self.rest_cache_dir = self.cache_dir.joinpath('.rest')
         self.cache_mode = cache_rest
         self._obj_id = id(self)
 
@@ -1368,5 +1369,5 @@ class AlyxClient:
 
     def clear_rest_cache(self):
         """Clear all REST response cache files for the base url."""
-        for file in self.cache_dir.joinpath('.rest').glob('*'):
+        for file in self.rest_cache_dir.glob('*'):
             file.unlink()

{one_api-3.2.0.dist-info → one_api-3.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ONE-api
-Version: 3.2.0
+Version: 3.3.0
 Summary: Open Neurophysiology Environment
 Author: IBL Staff
 License: MIT

{one_api-3.2.0.dist-info → one_api-3.3.0.dist-info}/RECORD

@@ -1,20 +1,20 @@
-one/__init__.py,sha256=zGn518Lze7AmFY0OUffuR1u56r6BdRnaMv1_KOy70r8,76
-one/api.py,sha256=XwMBFnkAqzmzwl1AOFLNZglT1xuw3IhLT7C8BHpET9A,134063
+one/__init__.py,sha256=nKd_NCNbJ9Ho_j3P8h-XU26LrTAttd57T00axX7w7lc,76
+one/api.py,sha256=THbxDFXr_sxgJK3yj_3v5xczvplG0LtIududHp1UrTM,136798
 one/converters.py,sha256=icKlwPyxf3tJtyOFBj_SG06QDLIZLdTGalCSk1-cAvk,30733
 one/params.py,sha256=zwR0Yq09ztROfH3fJsCUc-IDs_PBixT3WU3dm1vX728,15050
 one/registration.py,sha256=cWvQFAzCF04wMZJjdOzBPJkYOJ3BO2KEgqtVG7qOlmA,36177
 one/util.py,sha256=NUG_dTz3_4GXYG49qSql6mFCBkaVaq7_XdecRPRszJQ,20173
-one/webclient.py,sha256=PUFo2ts9tl1HSRGsnDO5fVBNI8KRuGf9GJGSCcW50B8,50410
+one/webclient.py,sha256=vdu4yrS8HltegsevhIJg2bKn-xpHYic5j1LO6_IwZiA,50445
 one/alf/__init__.py,sha256=DaFIi7PKlurp5HnyNOpJuIlY3pyhiottFpJfxR59VsY,70
 one/alf/cache.py,sha256=09NDLGIUA6GcCJgzbDxSFpgq9sU6gyCuHIF8c7zHAMM,24814
 one/alf/exceptions.py,sha256=6Gw8_ZObLnuYUpY4i0UyU4IA0kBZMBnJBGQyzIcDlUM,3427
 one/alf/io.py,sha256=7mmd1wJwh7qok0WKkpGzkLxEuw4WSnaQ6EkGVvaODLI,30798
-one/alf/path.py,sha256=0O5OtVBD4dsaq8Y0iP6NhrAcdkEewR79y06BnwHpDtk,54006
+one/alf/path.py,sha256=ylOUQK0TmBBHC_lJbgc0b_u8DTY8yP2hpouT0sIklvs,54065
 one/alf/spec.py,sha256=eWW4UDMsyYO52gzadZ-l09X2adVbXwpRKUBtd7NlYMw,20711
 one/remote/__init__.py,sha256=pasT1r9t2F2_-hbx-5EKlJ-yCM9ItucQbeDHUbFJcyA,40
 one/remote/aws.py,sha256=DurvObYa8rgyYQMWeaq1ol7PsdJoE9bVT1NnH2rxRRE,10241
 one/remote/base.py,sha256=cmS5TwCPjlSLuoN2UN995O9N-4Zr8ZHz3in_iRopMgs,4406
-one/remote/globus.py,sha256=GZTuORKFGKmuO9a71YcaURXIozmjIj_--mD5hqsZmLw,47511
+one/remote/globus.py,sha256=JV3k9iAwiBKnfuS-aZ5t_WcA6jpZtPvbUhcgdB7-8Zk,47501
 one/tests/fixtures/datasets.pqt,sha256=oYfOoGJfT1HN_rj-zpAaNpzzJsneekvDqg4zQ6XOQgk,29918
 one/tests/fixtures/sessions.pqt,sha256=KmBvSi_o0fhSnFhOjQOTq1BHemZsbn89BcSVw4Ecp60,6916
 one/tests/fixtures/test_dbs.json,sha256=Dq6IBOjofB6YdsEJEZDSDe6Gh4WebKX4Erx7Hs2i8WQ,310
@@ -29,9 +29,9 @@ one/tests/fixtures/rest_responses/5618bea3484a52cd893616f07903f0e49e023ba1,sha25
 one/tests/fixtures/rest_responses/6dc96f7e9bcc6ac2e7581489b9580a6cd3f28293,sha256=BggVJtZdEEuF5FIwtu0aOVKaqOrj_lF5xllr15vFad8,8065
 one/tests/fixtures/rest_responses/db1731fb8df0208944ae85f76718430813a8bf50,sha256=Dki7cTDg1bhbtPkuiv9NPRsuhM7TuicxoLcGtRD4D8g,209
 one/tests/fixtures/rest_responses/dcce48259bb929661f60a02a48563f70aa6185b3,sha256=skaKl6sPgTyrufCIGNVNJfccXM-jSjYvAdyqNS3HXuA,416
-one/tests/fixtures/rest_responses/f530d6022f61cdc9e38cc66beb3cb71f3003c9a1,sha256=EOqhNIVcmZ7j7aF09g5StFY434f2xbxwZLHwfeM4tug,22530
-one_api-3.2.0.dist-info/licenses/LICENSE,sha256=W6iRQJcr-tslNfY4gL98IWvPtpe0E3tcWCFOD3IFUqg,1087
-one_api-3.2.0.dist-info/METADATA,sha256=DE_ob38y4k2-2gFJU_UaWMixweTtSyygumplP57ESaQ,4170
-one_api-3.2.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-one_api-3.2.0.dist-info/top_level.txt,sha256=LIsI2lzmA5jh8Zrw5dzMdE3ydLgmq-WF6rpoxSVDSAY,4
-one_api-3.2.0.dist-info/RECORD,,
+one/tests/fixtures/rest_responses/f530d6022f61cdc9e38cc66beb3cb71f3003c9a1,sha256=6TgUqgqa7OgSyW3apDAnzjAOjMyHi_xV2M8uwOvvYoY,22575
+one_api-3.3.0.dist-info/licenses/LICENSE,sha256=W6iRQJcr-tslNfY4gL98IWvPtpe0E3tcWCFOD3IFUqg,1087
+one_api-3.3.0.dist-info/METADATA,sha256=3fTcrhrjWkVJHPsE8NueElUjtoK1Xy6YuKtfifQkEmA,4170
+one_api-3.3.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+one_api-3.3.0.dist-info/top_level.txt,sha256=LIsI2lzmA5jh8Zrw5dzMdE3ydLgmq-WF6rpoxSVDSAY,4
+one_api-3.3.0.dist-info/RECORD,,