MultiOptPy 1.20.5__py3-none-any.whl → 1.20.6__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- multioptpy/MD/thermostat.py +236 -123
- multioptpy/ModelHessian/fischerd3.py +240 -295
- multioptpy/Optimizer/rsirfo.py +112 -4
- multioptpy/Optimizer/rsprfo.py +1005 -698
- multioptpy/entrypoints.py +406 -16
- multioptpy/moleculardynamics.py +21 -13
- {multioptpy-1.20.5.dist-info → multioptpy-1.20.6.dist-info}/METADATA +9 -9
- {multioptpy-1.20.5.dist-info → multioptpy-1.20.6.dist-info}/RECORD +12 -12
- {multioptpy-1.20.5.dist-info → multioptpy-1.20.6.dist-info}/WHEEL +1 -1
- {multioptpy-1.20.5.dist-info → multioptpy-1.20.6.dist-info}/entry_points.txt +0 -0
- {multioptpy-1.20.5.dist-info → multioptpy-1.20.6.dist-info}/licenses/LICENSE +0 -0
- {multioptpy-1.20.5.dist-info → multioptpy-1.20.6.dist-info}/top_level.txt +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: MultiOptPy
|
|
3
|
-
Version: 1.20.
|
|
3
|
+
Version: 1.20.6
|
|
4
4
|
Summary: Multifunctional geometry optimization tools for quantum chemical calculations.
|
|
5
5
|
Author-email: ss0832 <highlighty876@gmail.com>
|
|
6
6
|
License-Expression: GPL-3.0-or-later
|
|
@@ -80,9 +80,9 @@ conda create -n test_mop python=3.12.7
|
|
|
80
80
|
conda activate test_mop
|
|
81
81
|
|
|
82
82
|
## 3. Download and install MultiOptPy:
|
|
83
|
-
wget https://github.com/ss0832/MultiOptPy/archive/refs/tags/v1.20.
|
|
84
|
-
unzip v1.20.
|
|
85
|
-
cd MultiOptPy-1.20.
|
|
83
|
+
wget https://github.com/ss0832/MultiOptPy/archive/refs/tags/v1.20.5.zip
|
|
84
|
+
unzip v1.20.5.zip
|
|
85
|
+
cd MultiOptPy-1.20.5
|
|
86
86
|
pip install -r requirements.txt
|
|
87
87
|
|
|
88
88
|
## 4. Copy the test configuration file and run the AutoTS workflow:
|
|
@@ -107,10 +107,10 @@ python run_autots.py aldol_rxn.xyz -cfg config_autots_run_xtb_test.json
|
|
|
107
107
|
# Installation via pip (Linux)
|
|
108
108
|
conda create -n <env-name> python=3.12 pip
|
|
109
109
|
conda activate <env-name>
|
|
110
|
-
pip install git+https://github.com/ss0832/MultiOptPy.git@v1.20.
|
|
111
|
-
wget https://github.com/ss0832/MultiOptPy/archive/refs/tags/v1.20.
|
|
112
|
-
unzip v1.20.
|
|
113
|
-
cd MultiOptPy-1.20.
|
|
110
|
+
pip install git+https://github.com/ss0832/MultiOptPy.git@v1.20.5
|
|
111
|
+
wget https://github.com/ss0832/MultiOptPy/archive/refs/tags/v1.20.5.zip
|
|
112
|
+
unzip v1.20.5.zip
|
|
113
|
+
cd MultiOptPy-1.20.5
|
|
114
114
|
|
|
115
115
|
## 💻 Command Line Interface (CLI) Functionality (v1.20.2)
|
|
116
116
|
# The following eight core functionalities are available as direct executable commands in your terminal after installation:
|
|
@@ -157,7 +157,7 @@ References are given in the source code.
|
|
|
157
157
|
After downloading the repository using git clone or similar commands, move to the generated directory and run the following:
|
|
158
158
|
python command
|
|
159
159
|
```
|
|
160
|
-
python optmain.py SN2.xyz -ma 150 1 6 -pyscf -elec
|
|
160
|
+
python optmain.py SN2.xyz -ma 150 1 6 -pyscf -elec -1 -spin 0 -opt rsirfo_block_fsb -modelhess
|
|
161
161
|
```
|
|
162
162
|
CLI command (arbitrary directory)
|
|
163
163
|
```
|
|
@@ -1,10 +1,10 @@
|
|
|
1
1
|
multioptpy/__init__.py,sha256=OJ7BAhHT2pWsIdC5wZfhCA5J8zW-odvaym9ySpPZ3Hw,125
|
|
2
|
-
multioptpy/entrypoints.py,sha256=
|
|
2
|
+
multioptpy/entrypoints.py,sha256=JeAlyVHVGmPXRT9pIMdL5CfKRw6WZgzlYd02hZY8xK4,58482
|
|
3
3
|
multioptpy/fileio.py,sha256=BJVhls9P_GU-ZB_nZgTgUPejru8-lJ1Qi-typHsG0WY,27175
|
|
4
4
|
multioptpy/ieip.py,sha256=XjN3ii1xVclXdSVb6g1gO1Q_7VtOBFR9jK7MjdFZrFM,16786
|
|
5
5
|
multioptpy/interface.py,sha256=Xohjpk1ofcEmDygGg93dRh9Dzha6VjbtcefmcoXqoZE,82013
|
|
6
6
|
multioptpy/irc.py,sha256=lTb1atfC5_QgW9a7FqQC-e-CXlTEhi1lms-zie_dEhI,20777
|
|
7
|
-
multioptpy/moleculardynamics.py,sha256=
|
|
7
|
+
multioptpy/moleculardynamics.py,sha256=qSrHtQYZXIK-ji7HyZeReAjLhrB2k_1DrO6iOTuudog,20816
|
|
8
8
|
multioptpy/neb.py,sha256=eQQsB8HrDOZ4rlvHOUIwfR52QNDvuhvH1am5h6K7Ho0,59339
|
|
9
9
|
multioptpy/optimization.py,sha256=FBMueS5ChGCZvCHsY7S8hCLf4nrWvjNMcEfWfj8vIdU,101480
|
|
10
10
|
multioptpy/optimizer.py,sha256=Nm6uDEMiv9u5_CPdhQYqGzwmCqHNzDIdYeYIn9z5EwM,42047
|
|
@@ -53,7 +53,7 @@ multioptpy/Interpolation/linear_interpolation.py,sha256=9Nu3znsNKGWoYZ0gEWhhrwEi
|
|
|
53
53
|
multioptpy/Interpolation/savitzky_golay_interpolation.py,sha256=MVUT8Rbe_8oN11FAPu99LeeJwOZ-C23wnLwiOo9f8Lc,12483
|
|
54
54
|
multioptpy/Interpolation/spline_interpolation.py,sha256=n_HK4TDri2owAwcW_zyIxnZKpO96WcV8IvLhm0QPuB0,14746
|
|
55
55
|
multioptpy/MD/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
56
|
-
multioptpy/MD/thermostat.py,sha256=
|
|
56
|
+
multioptpy/MD/thermostat.py,sha256=z7WqlR7wzvSRk2IHXTHeWJj-PTW4083viEjNWLXIJd8,12232
|
|
57
57
|
multioptpy/MEP/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
58
58
|
multioptpy/MEP/pathopt_bneb_force.py,sha256=k9ld8UJaWWOoU6yjTPGpE1kyx7V69W2k0QR23_lSnys,23826
|
|
59
59
|
multioptpy/MEP/pathopt_dmf_force.py,sha256=69yCYIAIWyJmz6ouS6tZ5i7KVIyWwxEmwq_aqFUCSq8,21014
|
|
@@ -78,7 +78,7 @@ multioptpy/ModelHessian/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG
|
|
|
78
78
|
multioptpy/ModelHessian/approx_hessian.py,sha256=efF8FA7lqBuw8h4DmkfU7T78yZiS5tQ_FhMm0CAseYE,6717
|
|
79
79
|
multioptpy/ModelHessian/calc_params.py,sha256=aWkXqqyYpg5_qemflM2oIkFA8g-h3wTiE_C_a5dkLxc,7645
|
|
80
80
|
multioptpy/ModelHessian/fischer.py,sha256=pdXmOMGF4Ie8cA3qN-KuyhJl_cuetvmpoI9t0fE3tNE,11011
|
|
81
|
-
multioptpy/ModelHessian/fischerd3.py,sha256=
|
|
81
|
+
multioptpy/ModelHessian/fischerd3.py,sha256=QWS-vWkHEzPLiMl8bAhd5A9BV1fKj8ym7GVVdZ8fg5M,13450
|
|
82
82
|
multioptpy/ModelHessian/fischerd4.py,sha256=GuSwCjzMV8g6BHvX0DJjHr_8AfjVdrfNn5DO_BEdDj4,17070
|
|
83
83
|
multioptpy/ModelHessian/gfn0xtb.py,sha256=xUipDBP_o9Y9bJ74RehCY06kroueStc0MsSm1llg638,27051
|
|
84
84
|
multioptpy/ModelHessian/gfnff.py,sha256=INsTLJ2c7wEqk0mxn_lURsQ2JsT8dM6JClR2etEein8,31162
|
|
@@ -152,8 +152,8 @@ multioptpy/Optimizer/rfo_neb.py,sha256=gtgkW8ImC_-QZGpsYHmBgvstkoPuGedNUG6BFrfvM
|
|
|
152
152
|
multioptpy/Optimizer/ric_rfo.py,sha256=xSDYTkOxQ8MytlSYo0z49Grd9-ZPcaJFbmHuqs7ePwI,33884
|
|
153
153
|
multioptpy/Optimizer/rl_step.py,sha256=XARDUifWoVmcoXXbVvmVGxvNEyLA1DtfENGnliUuuTg,27344
|
|
154
154
|
multioptpy/Optimizer/rmspropgrave.py,sha256=xUDXB1NKLljfc39NWXqc2-5NC-ux9bt58NpYlXb7LnM,2327
|
|
155
|
-
multioptpy/Optimizer/rsirfo.py,sha256=
|
|
156
|
-
multioptpy/Optimizer/rsprfo.py,sha256=
|
|
155
|
+
multioptpy/Optimizer/rsirfo.py,sha256=IjJ2BDu0QL4cFWi04BBmTU5N7xPqnAIf2jkkO3GV8OM,81810
|
|
156
|
+
multioptpy/Optimizer/rsprfo.py,sha256=MZs8yBO3z-jhBAxZYR1WaG5DOWEoBC_uYrHqourYh70,56180
|
|
157
157
|
multioptpy/Optimizer/sadam.py,sha256=7FjyALhYqHCOKXrN06tzCiCuS1SWKIPh1bJEdORYXMk,1865
|
|
158
158
|
multioptpy/Optimizer/samsgrad.py,sha256=QGL-Pv6A4pvgOAI-BGyNqci7X-GH2J98Wm2xsoJa2Zc,2016
|
|
159
159
|
multioptpy/Optimizer/tr_lbfgs.py,sha256=3GK1meULSBkuCyJkJ7AvEBzq2cFu8sr6dx3GIePrlAw,26949
|
|
@@ -243,9 +243,9 @@ multioptpy/Wrapper/ieip_wrapper.py,sha256=H0Fa7x5mzyFu5rnig7GdcZGX9LFclzRxDuREX5
|
|
|
243
243
|
multioptpy/Wrapper/md_wrapper.py,sha256=EGQKY8BwBbjWkXxKQGlelzht872OsUp9GmyxPDgWav4,3050
|
|
244
244
|
multioptpy/Wrapper/neb_wrapper.py,sha256=ZOyHhuSDKA5hABnQB7PYPfbQ9OyaAj9KKBeKu_HLiY4,3254
|
|
245
245
|
multioptpy/Wrapper/optimize_wrapper.py,sha256=b5DoiSb5Y4YjzYaSfxNa4A5QMn7_UzAvActPOpL78Ok,2667
|
|
246
|
-
multioptpy-1.20.
|
|
247
|
-
multioptpy-1.20.
|
|
248
|
-
multioptpy-1.20.
|
|
249
|
-
multioptpy-1.20.
|
|
250
|
-
multioptpy-1.20.
|
|
251
|
-
multioptpy-1.20.
|
|
246
|
+
multioptpy-1.20.6.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
|
|
247
|
+
multioptpy-1.20.6.dist-info/METADATA,sha256=wPARwptr8gTPYvTEG3kamkh_rOecyhJbNndyInlmngc,16713
|
|
248
|
+
multioptpy-1.20.6.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
|
|
249
|
+
multioptpy-1.20.6.dist-info/entry_points.txt,sha256=u2Y0tgYMu7UyZumhLCfoME92lCQXhurAAsixL_B3caw,404
|
|
250
|
+
multioptpy-1.20.6.dist-info/top_level.txt,sha256=_MXQNcS1xJbRbGnYUM-F_G-PlLK7wTIkuqx-EvfAhRc,11
|
|
251
|
+
multioptpy-1.20.6.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|