MoleditPy-linux 2.4.3__py3-none-any.whl → 2.4.5__py3-none-any.whl

moleditpy_linux/modules/bond_item.py

@@ -217,12 +217,19 @@ class BondItem(QGraphicsItem):
                 pen.setCapStyle(cap_style)
                 painter.setPen(pen)
                 
-            else:
-                painter.setPen(self.pen)
+                # Wedge/Dash Specific Settings
+                wedge_width_half = settings.get('bond_wedge_width_2d', 6.0)
+                num_dashes = int(settings.get('bond_dash_count_2d', 8))
+
+            # Use bond color for fill
+            painter.setBrush(QBrush(bond_color))
         except Exception:
+            # Fallback
             painter.setPen(self.pen)
-            
-        painter.setBrush(QBrush(Qt.GlobalColor.black))
+            painter.setBrush(QBrush(Qt.GlobalColor.black))
+            # Default fallback width for wedge
+            wedge_width_half = 6.0
+            num_dashes = 8
 
         # --- 立体化学 (Wedge/Dash) の描画 ---
         if self.order == 1 and self.stereo in [1, 2]:
@@ -232,7 +239,7 @@ class BondItem(QGraphicsItem):
             p2 = line.p2() - vec.p2() * 5
 
             if self.stereo == 1: # Wedge (くさび形)
-                offset = QPointF(normal.dx(), normal.dy()) * 6.0
+                offset = QPointF(normal.dx(), normal.dy()) * wedge_width_half
                 poly = QPolygonF([p1, p2 + offset, p2 - offset])
                 painter.drawPolygon(poly)
             
@@ -243,11 +250,11 @@ class BondItem(QGraphicsItem):
                     pen.setWidthF(2.5) 
                     painter.setPen(pen)
                 
-                num_dashes = 8
+                # Use configured number of dashes (default 8)
                 for i in range(num_dashes + 1):
                     t = i / num_dashes
                     start_pt = p1 * (1 - t) + p2 * t
-                    width = 12.0 * t
+                    width = (wedge_width_half * 2.0) * t
                     offset = QPointF(normal.dx(), normal.dy()) * width / 2.0
                     painter.drawLine(start_pt - offset, start_pt + offset)
                 painter.restore()

moleditpy_linux/modules/constants.py

@@ -16,7 +16,7 @@ from PyQt6.QtGui import QFont, QColor
 from rdkit import Chem
 
 #Version
-VERSION = '2.4.3'
+VERSION = '2.4.5'
 
 ATOM_RADIUS = 18
 BOND_OFFSET = 3.5

moleditpy_linux/modules/main_window_main_init.py

@@ -1253,8 +1253,6 @@ class MainWindowMainInit(object):
         
         plugin_menu.addSeparator()
         
-        # Initial population of plugins
-        self.update_plugin_menu(plugin_menu)
 
         settings_menu = menu_bar.addMenu("&Settings")
         # 1) 3D View settings (existing)
@@ -1420,11 +1418,12 @@ class MainWindowMainInit(object):
         )
         help_menu.addAction(manual_action)
 
-
-
         # 3D関連機能の初期状態を統一的に設定
         self._enable_3d_features(False)
         
+        # Finally, populate plugins now that all menus are created
+        self.update_plugin_menu(plugin_menu)
+        
 
 
     def init_worker_thread(self):

moleditpy_linux/modules/settings_dialog.py

@@ -27,7 +27,7 @@ class SettingsDialog(QDialog):
     def __init__(self, current_settings, parent=None):
         super().__init__(parent)
         self.setWindowTitle("Settings")
-        self.setMinimumSize(700, 800)
+        self.setMinimumSize(650, 750)
         
         # 親ウィンドウの参照を保存（Apply機能のため）
         self.parent_window = parent
@@ -99,6 +99,8 @@ class SettingsDialog(QDialog):
             'bond_color_2d': '#222222', # Almost black
             'atom_use_bond_color_2d': False,
             'bond_cap_style_2d': 'Round',
+            'bond_wedge_width_2d': 6.0,
+            'bond_dash_count_2d': 8,
         }
         
         # --- 選択された色を管理する専用のインスタンス変数 ---
@@ -244,6 +246,26 @@ class SettingsDialog(QDialog):
         self.bond_cap_style_2d_combo.addItems(['Round', 'Flat', 'Square'])
         form_layout.addRow("Bond Cap Style:", self.bond_cap_style_2d_combo)
 
+        # Wedge Bond Width
+        self.bond_wedge_width_2d_slider = QSlider(Qt.Orientation.Horizontal)
+        self.bond_wedge_width_2d_slider.setRange(10, 300) # 1.0 - 30.0
+        self.bond_wedge_width_2d_label = QLabel("6.0")
+        self.bond_wedge_width_2d_slider.valueChanged.connect(lambda v: self.bond_wedge_width_2d_label.setText(f"{v/10:.1f}"))
+        bww_layout = QHBoxLayout()
+        bww_layout.addWidget(self.bond_wedge_width_2d_slider)
+        bww_layout.addWidget(self.bond_wedge_width_2d_label)
+        form_layout.addRow("Wedge Bond Width:", bww_layout)
+
+        # Dash Count
+        self.bond_dash_count_2d_slider = QSlider(Qt.Orientation.Horizontal)
+        self.bond_dash_count_2d_slider.setRange(3, 20)
+        self.bond_dash_count_2d_label = QLabel("8")
+        self.bond_dash_count_2d_slider.valueChanged.connect(lambda v: self.bond_dash_count_2d_label.setText(str(v)))
+        bdc_layout = QHBoxLayout()
+        bdc_layout.addWidget(self.bond_dash_count_2d_slider)
+        bdc_layout.addWidget(self.bond_dash_count_2d_label)
+        form_layout.addRow("Dash Count:", bdc_layout)
+
 
         line2 = QFrame()
         line2.setFrameShape(QFrame.Shape.HLine)
@@ -791,7 +813,10 @@ class SettingsDialog(QDialog):
                 'background_color_2d': self.default_settings['background_color_2d'],
                 'bond_color_2d': self.default_settings['bond_color_2d'],
                 'atom_use_bond_color_2d': self.default_settings['atom_use_bond_color_2d'],
-                'bond_cap_style_2d': self.default_settings['bond_cap_style_2d']
+                'atom_use_bond_color_2d': self.default_settings['atom_use_bond_color_2d'],
+                'bond_cap_style_2d': self.default_settings['bond_cap_style_2d'],
+                'bond_wedge_width_2d': self.default_settings['bond_wedge_width_2d'],
+                'bond_dash_count_2d': self.default_settings['bond_dash_count_2d']
             },
             "3D Scene": {
                 'background_color': self.default_settings['background_color'],
@@ -1228,7 +1253,11 @@ class SettingsDialog(QDialog):
             'background_color_2d': self.current_bg_color_2d,
             'bond_color_2d': self.current_bond_color_2d,
             'atom_use_bond_color_2d': self.atom_use_bond_color_2d_checkbox.isChecked(),
+            'bond_color_2d': self.current_bond_color_2d,
+            'atom_use_bond_color_2d': self.atom_use_bond_color_2d_checkbox.isChecked(),
             'bond_cap_style_2d': self.bond_cap_style_2d_combo.currentText(),
+            'bond_wedge_width_2d': self.bond_wedge_width_2d_slider.value() / 10.0,
+            'bond_dash_count_2d': self.bond_dash_count_2d_slider.value(),
         }
 
     def pick_bs_bond_color(self):
@@ -1499,5 +1528,13 @@ class SettingsDialog(QDialog):
         index = self.bond_cap_style_2d_combo.findText(cap_style)
         if index >= 0:
             self.bond_cap_style_2d_combo.setCurrentIndex(index)
+
+        bww_2d = settings_dict.get('bond_wedge_width_2d', self.default_settings['bond_wedge_width_2d'])
+        self.bond_wedge_width_2d_slider.setValue(int(bww_2d * 10))
+        self.bond_wedge_width_2d_label.setText(f"{bww_2d:.1f}")
+
+        self.bond_dash_count_2d_slider.setValue(settings_dict.get('bond_dash_count_2d', self.default_settings['bond_dash_count_2d']))
+        self.bond_dash_count_2d_label.setText(str(self.bond_dash_count_2d_slider.value()))
+
         self.current_bond_color_2d = settings_dict.get('bond_color_2d', self.default_settings['bond_color_2d'])
         self.update_2d_color_buttons()

{moleditpy_linux-2.4.3.dist-info → moleditpy_linux-2.4.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: MoleditPy-linux
-Version: 2.4.3
+Version: 2.4.5
 Summary: A cross-platform, simple, and intuitive molecular structure editor built in Python. It allows 2D molecular drawing and 3D structure visualization. It supports exporting structure files for input to DFT calculation software.
 Author-email: HiroYokoyama <titech.yoko.hiro@gmail.com>
 License:                     GNU GENERAL PUBLIC LICENSE

{moleditpy_linux-2.4.3.dist-info → moleditpy_linux-2.4.5.dist-info}/RECORD

@@ -8,11 +8,11 @@ moleditpy_linux/modules/alignment_dialog.py,sha256=CPubSJI52mNSXmWt7oKQ2un5lXnN8
 moleditpy_linux/modules/analysis_window.py,sha256=zjP5ipSTpKw8oLr1eKdoxW8Bk1SslGlPqsVucD-x_5w,9403
 moleditpy_linux/modules/angle_dialog.py,sha256=uc2WbvSfRe892xoEirqpZ78pf2Smwzkinkso6zLWr0Y,17751
 moleditpy_linux/modules/atom_item.py,sha256=zPV6AO0Je4rKgZekyYCGehucleKP21ALDsjVhGV8n-M,17738
-moleditpy_linux/modules/bond_item.py,sha256=hOwga7DcxZf8zxwZr8F7viTNgEi_9wftKFgSpROUJs8,21602
+moleditpy_linux/modules/bond_item.py,sha256=JlfXCSd9wN13M52bcbly4hbI6W83IhYt5wpRzUAjMEg,22020
 moleditpy_linux/modules/bond_length_dialog.py,sha256=6bFPGssnqlgINuqpxLv-OhjMH3_hspnaH8QtorAyu2M,14782
 moleditpy_linux/modules/calculation_worker.py,sha256=KiGQY7i-QCQofEoE0r65KoQgpEGFcbhmxWv6egfkUdc,42324
 moleditpy_linux/modules/color_settings_dialog.py,sha256=Ow44BhCOLo0AFb6klO001k6B4drOgKX9DeNBQhZLp5o,15474
-moleditpy_linux/modules/constants.py,sha256=JnedcxOEw20rOrJh2Qb2t1CbYdcnkBwiHdhV1RtfNPY,4702
+moleditpy_linux/modules/constants.py,sha256=xHvWc66dgQ0Z1YICny3WRGTL8F9-BC33j7UgzGSuNzw,4702
 moleditpy_linux/modules/constrained_optimization_dialog.py,sha256=REsk4ePsqNmAGPMTS_jckeM7jexrU3krwun8sKqKUCs,30062
 moleditpy_linux/modules/custom_interactor_style.py,sha256=LDNODMJoNHGe1AUSrvqv6PdeJm-hpPmSpWINppnJLt0,38942
 moleditpy_linux/modules/custom_qt_interactor.py,sha256=vCZsDfRO-FtphD5cTP7Ps-5rpHZMIGloaoe6EaKzrsw,4139
@@ -25,7 +25,7 @@ moleditpy_linux/modules/main_window_dialog_manager.py,sha256=QR96LqHAPSOShXbc9cK
 moleditpy_linux/modules/main_window_edit_3d.py,sha256=CUArB5wcsgq1C7LygAEC6URlbnn4RhRYDa5n-Y-etWI,19731
 moleditpy_linux/modules/main_window_edit_actions.py,sha256=drVXRFpSOhILYfApcSro9zssnDw-a8F7wNcfQ3xQukw,69412
 moleditpy_linux/modules/main_window_export.py,sha256=_Vd7MeP_xaLWDYDm3-ZIZiPuAXhP-AvrQbi7Yx3Jy3c,43020
-moleditpy_linux/modules/main_window_main_init.py,sha256=tqXkyyE7TSkq-On7LZ7RMoZAoq9pzFcHWBsqrVV-1WY,94849
+moleditpy_linux/modules/main_window_main_init.py,sha256=SNgsnovYEbe_5lkpon3Wgh-v5SawI0xsb26DE5-W7ic,94882
 moleditpy_linux/modules/main_window_molecular_parsers.py,sha256=KR6vzuqc3nutOcorpYr0QOyX3MFBcxTwDhZX96VgJ9Q,48291
 moleditpy_linux/modules/main_window_project_io.py,sha256=TWwtuKDuvgcvPZ9IGmW8r1EJJOrgxrIJRnxe_f4C1oM,17149
 moleditpy_linux/modules/main_window_string_importers.py,sha256=v47wOd4RtjKYcF-aLP-mogGGdYTpTEo3dDyAu79_5MM,10782
@@ -41,7 +41,7 @@ moleditpy_linux/modules/planarize_dialog.py,sha256=eaqI1MpF35e-VUMpJATt-EtGG5Fhc
 moleditpy_linux/modules/plugin_interface.py,sha256=JfobFdAOLp5OnyJp3BNsWnpmZNJYypWQHNVNT0fP1N8,8171
 moleditpy_linux/modules/plugin_manager.py,sha256=ZFQz8VlCy1_IHX7DnMro7iRbouB_rxZQowfrKuZ76G8,21133
 moleditpy_linux/modules/plugin_manager_window.py,sha256=b4kEv0DaWHZG76ZaFTOxn6CVtA62_0MpPYYr10ehCtA,12544
-moleditpy_linux/modules/settings_dialog.py,sha256=kT1c4INl0EOlazDRv1WZbpg2AHEPfworyq8BO-6z79k,85511
+moleditpy_linux/modules/settings_dialog.py,sha256=9hq2QDmlJsjdblW6f1gorItLg31XJub9tVsgcZ60Cbk,87756
 moleditpy_linux/modules/template_preview_item.py,sha256=djdq3tz73d_fJGOvai3E-V9Hk9q9ZW7skx7BV59mooA,6556
 moleditpy_linux/modules/template_preview_view.py,sha256=4OCHZDO51BvJpKdfrBWJ4_4WfLfFSKxsVIyf7I-Kj2E,3350
 moleditpy_linux/modules/translation_dialog.py,sha256=x_GJsbVk-cj4aN2KgmYWDRUDInFlXezAoYoTvX-OT30,14553
@@ -51,9 +51,9 @@ moleditpy_linux/modules/assets/file_icon.ico,sha256=yyVj084A7HuMNbV073cE_Ag3Ne40
 moleditpy_linux/modules/assets/icon.icns,sha256=wD5R6-Vw7K662tVKhu2E1ImN0oUuyAP4youesEQsn9c,139863
 moleditpy_linux/modules/assets/icon.ico,sha256=RfgFcx7-dHY_2STdsOQCQziY5SNhDr3gPnjO6jzEDPI,147975
 moleditpy_linux/modules/assets/icon.png,sha256=kCFN1WacYIdy0GN6SFEbNA00ef39pCczBnFdkkBI8Bs,147110
-moleditpy_linux-2.4.3.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-moleditpy_linux-2.4.3.dist-info/METADATA,sha256=iPEaC6MzhfchKUqEYaEi-xF3e0BqLbZ21d4N6NA9Dn8,60708
-moleditpy_linux-2.4.3.dist-info/WHEEL,sha256=qELbo2s1Yzl39ZmrAibXA2jjPLUYfnVhUNTlyF1rq0Y,92
-moleditpy_linux-2.4.3.dist-info/entry_points.txt,sha256=-OzipSi__yVwlimNtu3eiRP5t5UMg55Cs0udyhXYiyw,60
-moleditpy_linux-2.4.3.dist-info/top_level.txt,sha256=qyqe-hDYL6CXyin9E5Me5rVl3PG84VqiOjf9bQvfJLs,16
-moleditpy_linux-2.4.3.dist-info/RECORD,,
+moleditpy_linux-2.4.5.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+moleditpy_linux-2.4.5.dist-info/METADATA,sha256=hRyUoLBN5zV3_M1aGNxUwlAGSHmVakf62lEBfBwISPM,60708
+moleditpy_linux-2.4.5.dist-info/WHEEL,sha256=qELbo2s1Yzl39ZmrAibXA2jjPLUYfnVhUNTlyF1rq0Y,92
+moleditpy_linux-2.4.5.dist-info/entry_points.txt,sha256=-OzipSi__yVwlimNtu3eiRP5t5UMg55Cs0udyhXYiyw,60
+moleditpy_linux-2.4.5.dist-info/top_level.txt,sha256=qyqe-hDYL6CXyin9E5Me5rVl3PG84VqiOjf9bQvfJLs,16
+moleditpy_linux-2.4.5.dist-info/RECORD,,