MoleditPy-linux 2.4.1__py3-none-any.whl → 2.4.2__py3-none-any.whl

moleditpy_linux/modules/constants.py

@@ -16,7 +16,7 @@ from PyQt6.QtGui import QFont, QColor
 from rdkit import Chem
 
 #Version
-VERSION = '2.4.1'
+VERSION = '2.4.2'
 
 ATOM_RADIUS = 18
 BOND_OFFSET = 3.5

moleditpy_linux/modules/main_window.py

@@ -532,6 +532,10 @@ class MainWindow(QMainWindow):
         # --- MOVED TO main_window_edit_actions.py ---
         return self.main_window_edit_actions.open_rotate_2d_dialog()
 
+    def rotate_molecule_2d(self, angle_degrees):
+        # --- MOVED TO main_window_edit_actions.py ---
+        return self.main_window_edit_actions.rotate_molecule_2d(angle_degrees)
+
     def draw_molecule_3d(self, mol):
         # --- MOVED TO main_window_view_3d.py ---
         return self.main_window_view_3d.draw_molecule_3d(mol)

moleditpy_linux/modules/main_window_edit_actions.py

@@ -618,18 +618,15 @@ class MainWindowEditActions(object):
             self.rotate_molecule_2d(angle)
 
     def rotate_molecule_2d(self, angle_degrees):
-        """2D分子を指定角度回転させる（選択範囲があればそれのみ、なければ全体）"""
+        """2D分子を指定角度回転させる（選択範囲があればそれのみ）"""
         try:
             # Determine target atoms
             selected_items = self.scene.selectedItems()
             target_atoms = [item for item in selected_items if isinstance(item, AtomItem)]
             
-            # If no selection, rotate everything
+            # If no selection, do not rotate
             if not target_atoms:
-                target_atoms = [data['item'] for data in self.data.atoms.values() if data.get('item') and not sip_isdeleted_safe(data['item'])]
-            
-            if not target_atoms:
-                self.statusBar().showMessage("No atoms to rotate.")
+                self.statusBar().showMessage("No atoms selected to rotate.")
                 return
 
             # Calculate Center
@@ -663,6 +660,8 @@ class MainWindowEditActions(object):
             self.push_undo_state()
             self.statusBar().showMessage(f"Rotated {len(target_atoms)} atoms by {angle_degrees} degrees.")
             self.scene.update()
+            # Force full redraw as requested
+            self.scene.update_all_items()
             
         except Exception as e:
             print(f"Error rotating molecule: {e}")

moleditpy_linux/modules/molecule_scene.py

@@ -116,6 +116,20 @@ class MoleculeScene(QGraphicsScene):
         self.reinitialize_items()
 
     
+    def update_connected_bonds(self, atoms):
+        """指定された原子リストに接続する全ての結合の位置を更新する"""
+        bonds_to_update = set()
+        for atom in atoms:
+            if hasattr(atom, 'bonds'):
+                bonds_to_update.update(atom.bonds)
+        
+        for bond in bonds_to_update:
+            try:
+                if not sip_isdeleted_safe(bond):
+                    bond.update_position()
+            except Exception:
+                continue
+
     def update_all_items(self):
         """全てのアイテムを強制的に再描画する"""
         for item in self.items():

{moleditpy_linux-2.4.1.dist-info → moleditpy_linux-2.4.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: MoleditPy-linux
-Version: 2.4.1
+Version: 2.4.2
 Summary: A cross-platform, simple, and intuitive molecular structure editor built in Python. It allows 2D molecular drawing and 3D structure visualization. It supports exporting structure files for input to DFT calculation software.
 Author-email: HiroYokoyama <titech.yoko.hiro@gmail.com>
 License:                     GNU GENERAL PUBLIC LICENSE

{moleditpy_linux-2.4.1.dist-info → moleditpy_linux-2.4.2.dist-info}/RECORD

@@ -12,18 +12,18 @@ moleditpy_linux/modules/bond_item.py,sha256=hOwga7DcxZf8zxwZr8F7viTNgEi_9wftKFgS
 moleditpy_linux/modules/bond_length_dialog.py,sha256=6bFPGssnqlgINuqpxLv-OhjMH3_hspnaH8QtorAyu2M,14782
 moleditpy_linux/modules/calculation_worker.py,sha256=KiGQY7i-QCQofEoE0r65KoQgpEGFcbhmxWv6egfkUdc,42324
 moleditpy_linux/modules/color_settings_dialog.py,sha256=Ow44BhCOLo0AFb6klO001k6B4drOgKX9DeNBQhZLp5o,15474
-moleditpy_linux/modules/constants.py,sha256=_KThEyBuzjfnKMFRCmrcHetn0kEWmXmVyiLT2bFsrQ0,4702
+moleditpy_linux/modules/constants.py,sha256=0jpJ6XvyBlso4hWUR9UqslTG-g8maR7_yipw9e9HoRk,4702
 moleditpy_linux/modules/constrained_optimization_dialog.py,sha256=REsk4ePsqNmAGPMTS_jckeM7jexrU3krwun8sKqKUCs,30062
 moleditpy_linux/modules/custom_interactor_style.py,sha256=LDNODMJoNHGe1AUSrvqv6PdeJm-hpPmSpWINppnJLt0,38942
 moleditpy_linux/modules/custom_qt_interactor.py,sha256=vCZsDfRO-FtphD5cTP7Ps-5rpHZMIGloaoe6EaKzrsw,4139
 moleditpy_linux/modules/dialog3_d_picking_mixin.py,sha256=z4udbkiX9PYmIGazPXsbftkk_oRRwZhcvlCqbyJzr24,6493
 moleditpy_linux/modules/dihedral_dialog.py,sha256=bOTDO6-b74vEDn_z6OyuBr5cRz3RnRj83PiaEBUyWJA,18002
-moleditpy_linux/modules/main_window.py,sha256=bYioEvqRVZVfLSJeV_Sw0TyA0rVWR4unQ0C5OgaDN2s,36642
+moleditpy_linux/modules/main_window.py,sha256=w52L0F7V3b0BiNhQImbulZ9N8cRKolYy06szfoMOIcg,36830
 moleditpy_linux/modules/main_window_app_state.py,sha256=8YDcGNCSpLTO1NGL9tEvNkXpUcS7JW-uK7TdUGvEqnk,35189
 moleditpy_linux/modules/main_window_compute.py,sha256=ipIkhH_DONXDnPzh7xeym9X-Yfx8EhsvXYOdyxsAj4c,53347
 moleditpy_linux/modules/main_window_dialog_manager.py,sha256=QR96LqHAPSOShXbc9cK-Ffq8a16JrXAoMKB0pHjESrQ,20072
 moleditpy_linux/modules/main_window_edit_3d.py,sha256=CUArB5wcsgq1C7LygAEC6URlbnn4RhRYDa5n-Y-etWI,19731
-moleditpy_linux/modules/main_window_edit_actions.py,sha256=jjMBwCzwflEHHvf_zh_RBcup9ceR_H4dDEvdRrb6wno,69009
+moleditpy_linux/modules/main_window_edit_actions.py,sha256=9CLyhfxLWG-zrqJXw_J5fwKzd3U3M5vKmQsy5qTFSJ8,68889
 moleditpy_linux/modules/main_window_export.py,sha256=_Vd7MeP_xaLWDYDm3-ZIZiPuAXhP-AvrQbi7Yx3Jy3c,43020
 moleditpy_linux/modules/main_window_main_init.py,sha256=t-um1lHvXo_tPXSkjx5Y0mjZlrKUhZbmb529e-7ffNU,94781
 moleditpy_linux/modules/main_window_molecular_parsers.py,sha256=KR6vzuqc3nutOcorpYr0QOyX3MFBcxTwDhZX96VgJ9Q,48291
@@ -34,7 +34,7 @@ moleditpy_linux/modules/main_window_view_3d.py,sha256=CxZxyJHl2isF7KtyVWSI9f8LVb
 moleditpy_linux/modules/main_window_view_loaders.py,sha256=gklTMo27QnyJ8Gd0ampPdbm9d0Gi-oHWkIqQuGADHmI,14352
 moleditpy_linux/modules/mirror_dialog.py,sha256=c3v4qY6R4FAljzk4EPaDjL9ZdZMjLQSFLqDMXz2fBUk,4696
 moleditpy_linux/modules/molecular_data.py,sha256=8gE9ByYg3kSBfb1zANsyad_BVBTm6WOLF7NsZIYuG2E,13250
-moleditpy_linux/modules/molecule_scene.py,sha256=khdt7h9Mk_D1cMbYeHGtq7P9aFXo0xG-hcShU_H2Y-Q,95911
+moleditpy_linux/modules/molecule_scene.py,sha256=7NijkUjelz7ZrGxZxaPPGMrMFRB8kw_eLQ0gXqge9BY,96429
 moleditpy_linux/modules/move_group_dialog.py,sha256=Fyuy3Uq1KsFsk9qR96r_FxPbAM_-zSfW2dsMQGv7btc,27276
 moleditpy_linux/modules/periodic_table_dialog.py,sha256=ItEZUts1XCietz9paY-spvbzxh6SXak3GnikwqkHZCw,4006
 moleditpy_linux/modules/planarize_dialog.py,sha256=eaqI1MpF35e-VUMpJATt-EtGG5FhcSUlbAenUaFGabY,8593
@@ -51,9 +51,9 @@ moleditpy_linux/modules/assets/file_icon.ico,sha256=yyVj084A7HuMNbV073cE_Ag3Ne40
 moleditpy_linux/modules/assets/icon.icns,sha256=wD5R6-Vw7K662tVKhu2E1ImN0oUuyAP4youesEQsn9c,139863
 moleditpy_linux/modules/assets/icon.ico,sha256=RfgFcx7-dHY_2STdsOQCQziY5SNhDr3gPnjO6jzEDPI,147975
 moleditpy_linux/modules/assets/icon.png,sha256=kCFN1WacYIdy0GN6SFEbNA00ef39pCczBnFdkkBI8Bs,147110
-moleditpy_linux-2.4.1.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-moleditpy_linux-2.4.1.dist-info/METADATA,sha256=j24fdE6I6P6thpRVu-hBu00rybC2YLhxrmi4u08LaeM,60708
-moleditpy_linux-2.4.1.dist-info/WHEEL,sha256=qELbo2s1Yzl39ZmrAibXA2jjPLUYfnVhUNTlyF1rq0Y,92
-moleditpy_linux-2.4.1.dist-info/entry_points.txt,sha256=-OzipSi__yVwlimNtu3eiRP5t5UMg55Cs0udyhXYiyw,60
-moleditpy_linux-2.4.1.dist-info/top_level.txt,sha256=qyqe-hDYL6CXyin9E5Me5rVl3PG84VqiOjf9bQvfJLs,16
-moleditpy_linux-2.4.1.dist-info/RECORD,,
+moleditpy_linux-2.4.2.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+moleditpy_linux-2.4.2.dist-info/METADATA,sha256=ssVC4cCxZSB97Lal7SKjEbrSkZa6EhirUnYkJn3GjQs,60708
+moleditpy_linux-2.4.2.dist-info/WHEEL,sha256=qELbo2s1Yzl39ZmrAibXA2jjPLUYfnVhUNTlyF1rq0Y,92
+moleditpy_linux-2.4.2.dist-info/entry_points.txt,sha256=-OzipSi__yVwlimNtu3eiRP5t5UMg55Cs0udyhXYiyw,60
+moleditpy_linux-2.4.2.dist-info/top_level.txt,sha256=qyqe-hDYL6CXyin9E5Me5rVl3PG84VqiOjf9bQvfJLs,16
+moleditpy_linux-2.4.2.dist-info/RECORD,,