ModDotPlot 0.9.0__py3-none-any.whl

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Files changed (14) hide show
  1. ModDotPlot-0.9.0.dist-info/LICENSE +21 -0
  2. ModDotPlot-0.9.0.dist-info/METADATA +421 -0
  3. ModDotPlot-0.9.0.dist-info/RECORD +14 -0
  4. ModDotPlot-0.9.0.dist-info/WHEEL +5 -0
  5. ModDotPlot-0.9.0.dist-info/entry_points.txt +2 -0
  6. ModDotPlot-0.9.0.dist-info/top_level.txt +1 -0
  7. moddotplot/__init__.py +1 -0
  8. moddotplot/__main__.py +11 -0
  9. moddotplot/const.py +293 -0
  10. moddotplot/estimate_identity.py +537 -0
  11. moddotplot/interactive.py +1755 -0
  12. moddotplot/moddotplot.py +1127 -0
  13. moddotplot/parse_fasta.py +156 -0
  14. moddotplot/static_plots.py +1264 -0
moddotplot/const.py ADDED
@@ -0,0 +1,293 @@
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+ VERSION = "0.9.0"
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+ COLS = [
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+ "#query_name",
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+ "query_start",
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+ "query_end",
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+ "reference_name",
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+ "reference_start",
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+ "reference_end",
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+ "perID_by_events",
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+ ]
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+
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+ ASCII_ART = """
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+ __ __ _ _____ _ _____ _ _
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+ | \/ | | | | __ \ | | | __ \| | | |
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+ | \ / | ___ __| | | | | | ___ | |_ | |__) | | ___ | |_
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+ | |\/| |/ _ \ / _` | | | | |/ _ \| __| | ___/| |/ _ \| __|
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+ | | | | (_) | (_| | | |__| | (_) | |_ | | | | (_) | |_
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+ |_| |_|\___/ \__,_| |_____/ \___/ \__| |_| |_|\___/ \__|
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+ """
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+
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+ DIVERGING_PALETTES = [
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+ "BrBG_3",
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+ "BrBG_4",
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+ "BrBG_5",
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+ "BrBG_6",
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+ "BrBG_7",
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+ "BrBG_8",
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+ "BrBG_9",
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+ "BrBG_10",
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+ "BrBG_11",
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+ "PRGn_3",
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+ "PRGn_4",
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+ "PRGn_5",
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+ "PRGn_6",
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+ "PRGn_7",
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+ "PRGn_8",
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+ "PRGn_9",
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+ "PRGn_10",
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+ "PRGn_11",
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+ "PiYG_3",
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+ "PiYG_4",
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+ "PiYG_5",
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+ "PiYG_6",
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+ "PiYG_7",
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+ "PiYG_8",
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+ "PiYG_9",
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+ "PiYG_10",
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+ "PiYG_11",
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+ "PuOr_3",
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+ "PuOr_4",
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+ "PuOr_5",
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+ "PuOr_6",
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+ "PuOr_7",
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+ "PuOr_8",
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+ "PuOr_9",
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+ "PuOr_10",
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+ "PuOr_11",
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+ "RdBu_3",
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+ "RdBu_4",
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+ "RdBu_5",
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+ "RdBu_6",
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+ "RdBu_7",
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+ "RdBu_8",
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+ "RdBu_9",
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+ "RdBu_10",
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+ "RdBu_11",
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+ "RdGy_3",
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+ "RdGy_4",
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+ "RdGy_5",
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+ "RdGy_6",
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+ "RdGy_7",
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+ "RdGy_8",
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+ "RdGy_9",
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+ "RdGy_10",
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+ "RdGy_11",
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+ "RdYlBu_3",
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+ "RdYlBu_4",
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+ "RdYlBu_5",
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+ "RdYlBu_6",
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+ "RdYlBu_7",
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+ "RdYlBu_8",
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+ "RdYlBu_9",
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+ "RdYlBu_10",
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+ "RdYlBu_11",
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+ "RdYlGn_3",
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+ "RdYlGn_4",
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+ "RdYlGn_5",
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+ "RdYlGn_6",
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+ "RdYlGn_7",
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+ "RdYlGn_8",
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+ "RdYlGn_9",
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+ "RdYlGn_10",
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+ "RdYlGn_11",
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+ "Spectral_3",
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+ "Spectral_4",
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+ "Spectral_5",
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+ "Spectral_6",
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+ "Spectral_7",
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+ "Spectral_8",
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+ "Spectral_9",
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+ "Spectral_10",
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+ "Spectral_11",
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+ ]
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+
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+ QUALITATIVE_PALETTES = [
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+ "Accent_3",
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+ "Accent_4",
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+ "Accent_5",
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+ "Accent_6",
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+ "Accent_7",
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+ "Accent_8",
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+ "Dark2_3",
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+ "Dark2_4",
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+ "Dark2_5",
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+ "Dark2_6",
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+ "Dark2_7",
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+ "Dark2_8",
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+ "Paired_3",
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+ "Paired_4",
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+ "Paired_5",
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+ "Paired_6",
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+ "Paired_7",
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+ "Paired_8",
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+ "Paired_9",
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+ "Paired_10",
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+ "Paired_11",
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+ "Paired_12",
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+ "Pastel1_3",
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+ "Pastel1_4",
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+ "Pastel1_5",
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+ "Pastel1_6",
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+ "Pastel1_7",
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+ "Pastel1_8",
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+ "Pastel1_9",
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+ "Pastel2_3",
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+ "Pastel2_4",
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+ "Pastel2_5",
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+ "Pastel2_6",
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+ "Pastel2_7",
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+ "Pastel2_8",
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+ "Set1_3",
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+ "Set1_4",
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+ "Set1_5",
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+ "Set1_6",
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+ "Set1_7",
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+ "Set1_8",
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+ "Set1_9",
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+ "Set2_3",
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+ "Set2_4",
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+ "Set2_5",
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+ "Set2_6",
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+ "Set2_7",
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+ "Set2_8",
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+ "Set3_3",
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+ "Set3_4",
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+ "Set3_5",
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+ "Set3_6",
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+ "Set3_7",
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+ "Set3_8",
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+ "Set3_9",
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+ "Set3_10",
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+ "Set3_11",
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+ "Set3_12",
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+ ]
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+
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+ SEQUENTIAL_PALETTES = [
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+ "Blues_3",
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+ "Blues_4",
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+ "Blues_5",
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+ "Blues_6",
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+ "Blues_7",
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+ "Blues_8",
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+ "Blues_9",
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+ "BuGn_3",
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+ "BuGn_4",
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+ "BuGn_5",
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+ "BuGn_6",
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+ "BuGn_7",
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+ "BuGn_8",
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+ "BuGn_9",
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+ "BuPu_3",
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+ "BuPu_4",
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+ "BuPu_5",
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+ "BuPu_6",
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+ "BuPu_7",
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+ "BuPu_8",
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+ "BuPu_9",
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+ "GnBu_3",
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+ "GnBu_4",
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+ "GnBu_5",
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+ "GnBu_6",
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+ "GnBu_7",
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+ "GnBu_8",
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+ "GnBu_9",
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+ "Greens_3",
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+ "Greens_4",
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+ "Greens_5",
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+ "Greens_6",
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+ "Greens_7",
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+ "Greens_8",
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+ "Greens_9",
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+ "Greys_3",
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+ "Greys_4",
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+ "Greys_5",
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+ "Greys_6",
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+ "Greys_7",
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+ "Greys_8",
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+ "Greys_9",
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+ "OrRd_3",
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+ "OrRd_4",
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+ "OrRd_5",
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+ "OrRd_6",
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+ "OrRd_7",
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+ "OrRd_8",
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+ "OrRd_9",
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+ "Oranges_3",
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+ "Oranges_4",
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+ "Oranges_5",
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+ "Oranges_6",
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+ "Oranges_7",
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+ "Oranges_8",
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+ "Oranges_9",
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+ "PuBu_3",
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+ "PuBu_4",
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+ "PuBu_5",
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+ "PuBu_6",
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+ "PuBu_7",
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+ "PuBu_8",
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+ "PuBu_9",
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+ "PuBuGn_3",
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+ "PuBuGn_4",
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+ "PuBuGn_5",
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+ "PuBuGn_6",
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+ "PuBuGn_7",
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+ "PuBuGn_8",
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+ "PuBuGn_9",
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+ "PuRd_3",
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+ "PuRd_4",
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+ "PuRd_5",
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+ "PuRd_6",
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+ "PuRd_7",
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+ "PuRd_8",
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+ "PuRd_9",
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+ "Purples_3",
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+ "Purples_4",
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+ "Purples_5",
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+ "Purples_6",
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+ "Purples_7",
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+ "Purples_8",
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+ "Purples_9",
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+ "RdPu_3",
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+ "RdPu_4",
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+ "RdPu_5",
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+ "RdPu_6",
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+ "RdPu_7",
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+ "RdPu_8",
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+ "RdPu_9",
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+ "Reds_3",
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+ "Reds_4",
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+ "Reds_5",
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+ "Reds_6",
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+ "Reds_7",
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+ "Reds_8",
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+ "Reds_9",
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+ "YlGn_3",
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+ "YlGn_4",
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+ "YlGn_5",
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+ "YlGn_6",
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+ "YlGn_7",
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+ "YlGn_8",
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+ "YlGn_9",
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+ "YlGnBu_3",
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+ "YlGnBu_4",
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+ "YlGnBu_5",
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+ "YlGnBu_6",
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+ "YlGnBu_7",
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+ "YlGnBu_8",
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+ "YlGnBu_9",
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+ "YlOrBr_3",
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+ "YlOrBr_4",
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+ "YlOrBr_5",
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+ "YlOrBr_6",
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+ "YlOrBr_7",
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+ "YlOrBr_8",
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+ "YlOrBr_9",
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+ "YlOrRd_3",
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+ "YlOrRd_4",
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+ "YlOrRd_5",
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+ "YlOrRd_6",
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+ "YlOrRd_7",
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+ "YlOrRd_8",
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+ "YlOrRd_9",
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+ ]