PyPI - MindsDB - Versions diffs - 1.3.1__py3-none-any.whl → 24.12.4.0__py3-none-any.whl - Mend

MindsDB 1.3.1py3-none-any.whl → 24.12.4.0py3-none-any.whl

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mindsdb/integrations/handlers/mediawiki_handler/icon.svg ADDED Viewed

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+      <stop offset="0.5" stop-color="#FF0000"/>
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+    </linearGradient>
+    <linearGradient id="paint19_linear_155_1085" x1="0.769248" y1="39.2508" x2="39.2308" y2="0.789246" gradientUnits="userSpaceOnUse">
+      <stop stop-color="#0A00B2"/>
+      <stop offset="0.5" stop-color="#FF0000"/>
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+    <linearGradient id="paint20_linear_155_1085" x1="0.769274" y1="39.2507" x2="39.2308" y2="0.789162" gradientUnits="userSpaceOnUse">
+      <stop stop-color="#0A00B2"/>
+      <stop offset="0.5" stop-color="#FF0000"/>
+      <stop offset="1" stop-color="#FFFC00"/>
+    </linearGradient>
+    <linearGradient id="paint21_linear_155_1085" x1="0.769182" y1="39.2506" x2="39.2307" y2="0.789094" gradientUnits="userSpaceOnUse">
+      <stop stop-color="#0A00B2"/>
+      <stop offset="0.5" stop-color="#FF0000"/>
+      <stop offset="1" stop-color="#FFFC00"/>
+    </linearGradient>
+    <linearGradient id="paint22_linear_155_1085" x1="0.769254" y1="39.2509" x2="39.2308" y2="0.789359" gradientUnits="userSpaceOnUse">
+      <stop stop-color="#0A00B2"/>
+      <stop offset="0.5" stop-color="#FF0000"/>
+      <stop offset="1" stop-color="#FFFC00"/>
+    </linearGradient>
+    <linearGradient id="paint23_linear_155_1085" x1="0.769254" y1="39.2509" x2="39.2308" y2="0.78939" gradientUnits="userSpaceOnUse">
+      <stop stop-color="#0A00B2"/>
+      <stop offset="0.5" stop-color="#FF0000"/>
+      <stop offset="1" stop-color="#FFFC00"/>
+    </linearGradient>
+    <clipPath id="clip0_155_1085">
+      <rect width="40" height="40" fill="white"/>
+    </clipPath>
+  </defs>
+</svg>

mindsdb/integrations/handlers/mediawiki_handler/mediawiki_handler.py ADDED Viewed

@@ -0,0 +1,87 @@
+from mediawikiapi import MediaWikiAPI
+from mindsdb.integrations.handlers.mediawiki_handler.mediawiki_tables import PagesTable
+from mindsdb.integrations.libs.api_handler import APIHandler
+from mindsdb.integrations.libs.response import (
+    HandlerStatusResponse as StatusResponse,
+)
+from mindsdb.utilities import log
+from mindsdb_sql_parser import parse_sql
+logger = log.getLogger(__name__)
+class MediaWikiHandler(APIHandler):
+    """
+    The MediaWiki handler implementation.
+    """
+    name = 'mediawiki'
+    def __init__(self, name: str, **kwargs):
+        """
+        Initialize the handler.
+        Args:
+            name (str): name of particular handler instance
+            **kwargs: arbitrary keyword arguments.
+        """
+        super().__init__(name)
+        self.kwargs = kwargs
+        self.connection = None
+        self.is_connected = False
+        pages_data = PagesTable(self)
+        self._register_table("pages", pages_data)
+    def connect(self):
+        """
+        Set up the connection required by the handler.
+        Returns
+        -------
+        StatusResponse
+            connection object
+        """
+        if self.is_connected is True:
+            return self.connection
+        self.connection = MediaWikiAPI()
+        self.is_connected = True
+        return self.connection
+    def check_connection(self) -> StatusResponse:
+        """
+        Check connection to the handler.
+        Returns:
+            HandlerStatusResponse
+        """
+        response = StatusResponse(False)
+        try:
+            self.connect()
+            response.success = True
+        except Exception as e:
+            logger.error(f'Error connecting to MediaWiki!')
+            response.error_message = str(e)
+        self.is_connected = response.success
+        return response
+    def native_query(self, query: str) -> StatusResponse:
+        """Receive and process a raw query.
+        Parameters
+        ----------
+        query : str
+            query in a native format
+        Returns
+        -------
+        StatusResponse
+            Request status
+        """
+        ast = parse_sql(query)
+        return self.query(ast)

mindsdb/integrations/handlers/mediawiki_handler/mediawiki_tables.py ADDED Viewed

@@ -0,0 +1,98 @@
+import pandas as pd
+from typing import List
+from mindsdb.integrations.libs.api_handler import APITable
+from mindsdb_sql_parser import ast
+from mindsdb.integrations.utilities.handlers.query_utilities import SELECTQueryParser, SELECTQueryExecutor
+from mindsdb.utilities import log
+logger = log.getLogger(__name__)
+class PagesTable(APITable):
+    """The MediaWiki Pages Table implementation"""
+    def select(self, query: ast.Select) -> pd.DataFrame:
+        """Pulls MediaWiki pages data.
+        Parameters
+        ----------
+        query : ast.Select
+           Given SQL SELECT query
+        Returns
+        -------
+        pd.DataFrame
+            Sendinblue Email Campaigns matching the query
+        Raises
+        ------
+        ValueError
+            If the query contains an unsupported condition
+        """
+        select_statement_parser = SELECTQueryParser(
+            query,
+            'pages',
+            self.get_columns()
+        )
+        selected_columns, where_conditions, order_by_conditions, result_limit = select_statement_parser.parse_query()
+        title, page_id = None, None
+        for condition in where_conditions:
+            if condition[1] == 'title':
+                if condition[0] != '=':
+                    raise ValueError(f"Unsupported operator '{condition[0]}' for column '{condition[1]}' in WHERE clause.")
+                title = condition[2]
+            elif condition[1] == 'pageid':
+                if condition[0] != '=':
+                    raise ValueError(f"Unsupported operator '{condition[0]}' for column '{condition[1]}' in WHERE clause.")
+                page_id = condition[2]
+            else:
+                raise ValueError(f"Unsupported column '{condition[1]}' in WHERE clause.")
+        pages_df = pd.json_normalize(self.get_pages(title=title, page_id=page_id, limit=result_limit))
+        select_statement_executor = SELECTQueryExecutor(
+            pages_df,
+            selected_columns,
+            [],
+            order_by_conditions
+        )
+        pages_df = select_statement_executor.execute_query()
+        return pages_df
+    def get_columns(self) -> List[str]:
+        return ['pageid', 'title', 'original_title', 'content', 'summary', 'url', 'categories']
+    def get_pages(self, title: str = None, page_id: int = None, limit: int = 20):
+        query_parts = []
+        query_parts.append(f'intitle:{title}') if title is not None else None
+        query_parts.append(f'pageid:{page_id}') if page_id is not None else None
+        search_query = ' | '.join(query_parts)
+        connection = self.handler.connect()
+        if search_query:
+            return [self.convert_page_to_dict(connection.page(result, auto_suggest=False)) for result in connection.search(search_query, results=limit)]
+        else:
+            return [self.convert_page_to_dict(connection.page(result, auto_suggest=False)) for result in connection.random(pages=limit)]
+    def convert_page_to_dict(self, page):
+        result = {}
+        attributes = self.get_columns()
+        for attribute in attributes:
+            try:
+                result[attribute] = getattr(page, attribute)
+            except KeyError:
+                logger.debug(f"Error accessing '{attribute}' attribute. Skipping...")
+        return result

mindsdb/integrations/handlers/mediawiki_handler/requirements.txt ADDED Viewed

	@@ -0,0 +1 @@
1	+ mediawikiapi

mindsdb/integrations/handlers/mendeley_handler/__about__.py ADDED Viewed

@@ -0,0 +1,9 @@
+__title__ = 'MindsDB Mendeley handler'
+__package_name__ = 'mindsdb_mendeley_handler'
+__version__ = '0.0.1'
+__description__ = "MindsDB handler for Mendeley"
+__author__ = 'Christina Nikolovieni'
+__github__ = 'https://github.com/mindsdb/mindsdb'
+__pypi__ = 'https://pypi.org/project/mindsdb/'
+__license__ = 'MIT'
+__copyright__ = 'Copyright 2022- mindsdb'

mindsdb/integrations/handlers/mendeley_handler/__init__.py ADDED Viewed

@@ -0,0 +1,19 @@
+from mindsdb.integrations.libs.const import HANDLER_TYPE
+from .__about__ import __version__ as version, __description__ as description
+try:
+    from .mendeley_handler import MendeleyHandler as Handler
+    import_error = None
+except Exception as e:
+    Handler = None
+    import_error = e
+title = 'Mendeley'
+name = 'mendeley'
+type = HANDLER_TYPE.DATA
+icon_path= 'icon.svg'
+permanent = False
+__all__ = [
+    'Handler', 'version', 'name', 'type', 'title', 'description', 'import_error','icon_path'
+]

mindsdb/integrations/handlers/mendeley_handler/icon.svg ADDED Viewed

@@ -0,0 +1,14 @@
+<svg width="40" height="40" viewBox="0 0 40 40" fill="none" xmlns="http://www.w3.org/2000/svg">
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+</g>
+<defs>
+<linearGradient id="paint0_linear_155_1111" x1="19.9983" y1="9.00453" x2="19.9983" y2="31.2027" gradientUnits="userSpaceOnUse">
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+<stop offset="1" stop-color="#930D18"/>
+</linearGradient>
+<clipPath id="clip0_155_1111">
+<rect width="40" height="40" fill="white"/>
+</clipPath>
+</defs>
+</svg>

mindsdb/integrations/handlers/mendeley_handler/mendeley_handler.py ADDED Viewed

@@ -0,0 +1,225 @@
+from mindsdb_sql_parser import parse_sql
+import pandas as pd
+from mendeley import Mendeley
+from mindsdb.integrations.libs.api_handler import APIHandler, FuncParser
+from mendeley.session import MendeleySession
+from mindsdb.integrations.handlers.mendeley_handler.mendeley_tables import CatalogSearchTable
+from mindsdb.utilities import log
+from typing import Dict
+from mindsdb.integrations.libs.response import (
+    HandlerStatusResponse as StatusResponse,
+    HandlerResponse as Response,
+    RESPONSE_TYPE
+)
+logger = log.getLogger(__name__)
+class MendeleyHandler(APIHandler):
+    def __init__(self, name, **kwargs):
+        """ constructor
+        Args:
+            name (str): the handler name
+        """
+        super().__init__(name)
+        self.connection_args = kwargs.get('connection_data', {})
+        self.client_id = self.connection_args.get('client_id', None)
+        self.client_secret = self.connection_args.get('client_secret', None)
+        self.session = self.connect()
+        self.session = None
+        self.is_connected = False
+        catalog_search_data = CatalogSearchTable(self)
+        self.catalog_search_data = catalog_search_data
+        self._register_table('catalog_search_data', catalog_search_data)
+    def connect(self) -> MendeleySession:
+        """ The connect method sets up the connection required by the handler.
+        In order establish a connection with Mendeley API one needs the client id and client secret that are
+        created after registering the application at https://dev.mendeley.com/myapps.html . More information on the matter
+        can be found at https://dev.mendeley.com/reference/topics/application_registration.html .
+        In order to have access to Mendeley data we use "session".
+        Returns:
+        HandlerStatusResponse """
+        if self.is_connected == True:
+            return self.session
+        mendeley = Mendeley(self.client_id, self.client_secret)
+        auth = mendeley.start_client_credentials_flow()
+        self.session = auth.authenticate()
+        self.is_connected = True
+        return self.session
+    def check_connection(self) -> StatusResponse:
+        """ The check_connection method checks the connection to the handler
+        Returns:
+            HandlerStatusResponse
+        """
+        response = StatusResponse(False)
+        try:
+            self.connect()
+            response.success = True
+        except Exception as e:
+            logger.error(f'Error connecting to Mendeley: {e}!')
+            response.error_message = str(e)
+        self.is_connected = response.success
+        return response
+    def native_query(self, query_string: str):
+        """The native_query method receives raw query and acts upon it.
+            Args:
+                query_string (str): query in native format
+            Returns:
+                HandlerResponse
+        """
+        ast = parse_sql(query_string)
+        return self.query(ast)
+    def get_authors(self,data):
+        """The get_authors method receives the data - a specific document returned by the API, gets the names of the authors
+            and combines them in a string, so as to allow the use of DataFrame.
+            Args:
+                data (CatalogDocument): document returned by API
+            Returns:
+                authors string
+        """
+        authors = ""
+        sum = 0
+        if data.authors!=None:
+            for x in data.authors:
+                if sum + 1 == len(data.authors) and x.first_name!=None and x.last_name!=None  :
+                    authors = authors + x.first_name + " " + x.last_name
+                else:
+                    if x.first_name!=None and x.last_name!=None:
+                        authors = authors + x.first_name + " " + x.last_name + ", "
+                        sum = sum + 1
+        return authors
+    def get_keywords(self,data):
+        """The get_keywords method receives the data-a specific document returned by the API, gets the specified keywords
+            and combines them in a string, so as to allow the use of DataFrame.
+            Args:
+                data (CatalogDocument) : document returned by the API
+            Returns:
+                keywords string
+        """
+        keywords = ""
+        sum = 0
+        if data.keywords!=None:
+            for x in data.keywords:
+                if sum + 1 == len(data.keywords):
+                    keywords = keywords  + x + " "
+                else:
+                    if x!=None :
+                        keywords = keywords + x + ", "
+                        sum = sum + 1
+        return keywords
+    def create_dict(self,data):
+        """The create_dict method receives the data-a specific document returned by the API, gets the resources-fields of the document,
+          as specified in Mendley documentation, and puts them in a dictionary.
+            Args:
+                data (CatalogDocument) : document returned by API
+            Returns:
+                dict dictionary
+        """
+        dict = {}
+        dict["title"] = data.title
+        dict["type"] = data.type
+        dict["source"] = data.source
+        dict["year"] = data.year
+        if data.identifiers!=None:
+            dict["pmid"] = data.identifiers.get("pmid")
+            dict["sgr"] = data.identifiers.get("sgr")
+            dict["issn"] = data.identifiers.get("issn")
+            dict["scopus"] = data.identifiers.get("scopus")
+            dict["doi"] = data.identifiers.get("doi")
+            dict["pui"] = data.identifiers.get("pui")
+        dict["authors"] = self.get_authors(data)
+        if data.keywords!=None:
+            dict["keywords"] = self.get_keywords(data)
+        else:
+            dict["keywords"] = None
+        dict["link"] = data.link
+        dict["id"] = data.id
+        return dict
+    def call_mendeley_api(self, method_name: str, params: Dict) -> pd.DataFrame:
+        """The method call_mendeley_api is used to communicate with Mendeley. Depending on the method used there are three different types
+        of search conducted.
+        The advanced_search results in a CatalogSearch resource, which, depending on the parameters used, could either be a number of different documents (CatalogDocument),
+        a single one or none.
+        The by_identifier search is more specific in nature and can result either in one or no CatalogDocuments.
+        The get search has the same results as the by_identifier.
+        If the method specified does not exist, an NotImplementedError is raised.
+        Args:
+            method_name (str) : name of method
+            params (Dict): Dictionary containing the parameters used in the search
+        Returns:
+            DataFrame
+        """
+        self.session= self.connect()
+        if method_name == 'advanced_search':
+            search_params = {
+            'title': params.get("title"),
+            'author': params.get("author"),
+            'source': params.get("source"),
+            'abstract': params.get("abstract"),
+            'min_year': params.get("min_year"),
+            'max_year': params.get("max_year"),
+            'open_access': params.get("open_access")
+            }
+            data = self.session.catalog.advanced_search(**search_params)
+            sum = 0
+            df = pd.DataFrame()
+            for x in data.list(page_size=params["limit"]).items:
+                    if sum == 0:
+                        df = pd.DataFrame(self.create_dict(x),index=[0])
+                        sum += 1
+                    else :
+                        df = df.append(self.create_dict(x),ignore_index = True)
+                        sum += 1
+            if df.empty:
+                raise NotImplementedError(('Insufficient or wrong input given'))
+            else:
+                return df
+        elif method_name == 'identifier_search':
+            search_params = {
+            'arxiv': params.get("arxiv"),
+            'doi': params.get("doi"),
+            'isbn': params.get("isbn"),
+            'issn': params.get("issn"),
+            'pmid': params.get("pmid"),
+            'scopus': params.get("scopus"),
+            'filehash': params.get("filehash")
+            }
+            data = self.session.catalog.by_identifier(**search_params)
+            df = pd.DataFrame(self.create_dict(data),index=[0])
+            return df
+        elif method_name == 'get':
+            data = self.session.catalog.get(params.get("id"))
+            df = pd.DataFrame(self.create_dict(data),index=[0])
+            return df
+        raise NotImplementedError('Method name {} not supported by Mendeley API Handler'.format(method_name))

MindsDB 1.3.1__py3-none-any.whl → 24.12.4.0__py3-none-any.whl

Potentially problematic release.

MindsDB 1.3.1py3-none-any.whl → 24.12.4.0py3-none-any.whl