Mesa 2.3.0.dev0__py3-none-any.whl → 2.3.0rc1__py3-none-any.whl

mesa/experimental/jupyter_viz.py

@@ -17,7 +17,7 @@ plt.switch_backend("agg")
 # TODO: Turn this function into a Solara component once the current_step.value
 # dependency is passed to measure()
 def Card(
-    model, measures, agent_portrayal, space_drawer, current_step, color, layout_type
+    model, measures, agent_portrayal, space_drawer, dependencies, color, layout_type
 ):
     with rv.Card(
         style_=f"background-color: {color}; width: 100%; height: 100%"
@@ -27,11 +27,11 @@ def Card(
             if space_drawer == "default":
                 # draw with the default implementation
                 components_matplotlib.SpaceMatplotlib(
-                    model, agent_portrayal, dependencies=[current_step.value]
+                    model, agent_portrayal, dependencies=dependencies
                 )
             elif space_drawer == "altair":
                 components_altair.SpaceAltair(
-                    model, agent_portrayal, dependencies=[current_step.value]
+                    model, agent_portrayal, dependencies=dependencies
                 )
             elif space_drawer:
                 # if specified, draw agent space with an alternate renderer
@@ -44,7 +44,7 @@ def Card(
                 measure(model)
             else:
                 components_matplotlib.PlotMatplotlib(
-                    model, measure, dependencies=[current_step.value]
+                    model, measure, dependencies=dependencies
                 )
     return main
 
@@ -58,6 +58,7 @@ def JupyterViz(
     agent_portrayal=None,
     space_drawer="default",
     play_interval=150,
+    seed=None,
 ):
     """Initialize a component to visualize a model.
     Args:
@@ -71,6 +72,7 @@ def JupyterViz(
             simulations with no space to visualize should
             specify `space_drawer=False`
         play_interval: play interval (default: 150)
+        seed: the random seed used to initialize the model
     """
     if name is None:
         name = model_class.__name__
@@ -78,6 +80,7 @@ def JupyterViz(
     current_step = solara.use_reactive(0)
 
     # 1. Set up model parameters
+    reactive_seed = solara.use_reactive(0)
     user_params, fixed_params = split_model_params(model_params)
     model_parameters, set_model_parameters = solara.use_state(
         {**fixed_params, **{k: v.get("value") for k, v in user_params.items()}}
@@ -85,13 +88,21 @@ def JupyterViz(
 
     # 2. Set up Model
     def make_model():
-        model = model_class(**model_parameters)
+        model = model_class.__new__(
+            model_class, **model_parameters, seed=reactive_seed.value
+        )
+        model.__init__(**model_parameters)
         current_step.value = 0
         return model
 
     reset_counter = solara.use_reactive(0)
     model = solara.use_memo(
-        make_model, dependencies=[*list(model_parameters.values()), reset_counter.value]
+        make_model,
+        dependencies=[
+            *list(model_parameters.values()),
+            reset_counter.value,
+            reactive_seed.value,
+        ],
     )
 
     def handle_change_model_params(name: str, value: any):
@@ -103,8 +114,12 @@ def JupyterViz(
         solara.AppBarTitle(name)
 
     # render layout and plot
+    def do_reseed():
+        reactive_seed.value = model.random.random()
 
     # jupyter
+    dependencies = [current_step.value, reactive_seed.value]
+
     def render_in_jupyter():
         with solara.GridFixed(columns=2):
             UserInputs(user_params, on_change=handle_change_model_params)
@@ -116,11 +131,11 @@ def JupyterViz(
             if space_drawer == "default":
                 # draw with the default implementation
                 components_matplotlib.SpaceMatplotlib(
-                    model, agent_portrayal, dependencies=[current_step.value]
+                    model, agent_portrayal, dependencies=dependencies
                 )
             elif space_drawer == "altair":
                 components_altair.SpaceAltair(
-                    model, agent_portrayal, dependencies=[current_step.value]
+                    model, agent_portrayal, dependencies=dependencies
                 )
             elif space_drawer:
                 # if specified, draw agent space with an alternate renderer
@@ -134,7 +149,7 @@ def JupyterViz(
                     measure(model)
                 else:
                     components_matplotlib.PlotMatplotlib(
-                        model, measure, dependencies=[current_step.value]
+                        model, measure, dependencies=dependencies
                     )
 
     def render_in_browser():
@@ -144,15 +159,21 @@ def JupyterViz(
         if measures:
             layout_types += [{"Measure": elem} for elem in range(len(measures))]
 
-        grid_layout_initial = get_initial_grid_layout(layout_types=layout_types)
+        grid_layout_initial = make_initial_grid_layout(layout_types=layout_types)
         grid_layout, set_grid_layout = solara.use_state(grid_layout_initial)
 
         with solara.Sidebar():
             with solara.Card("Controls", margin=1, elevation=2):
+                solara.InputText(
+                    label="Seed",
+                    value=reactive_seed,
+                    continuous_update=True,
+                )
                 UserInputs(user_params, on_change=handle_change_model_params)
                 ModelController(model, play_interval, current_step, reset_counter)
-            with solara.Card("Progress", margin=1, elevation=2):
-                solara.Markdown(md_text=f"####Step - {current_step}")
+                solara.Button(label="Reseed", color="primary", on_click=do_reseed)
+            with solara.Card("Information", margin=1, elevation=2):
+                solara.Markdown(md_text=f"Step - {current_step}")
 
         items = [
             Card(
@@ -160,7 +181,7 @@ def JupyterViz(
                 measures,
                 agent_portrayal,
                 space_drawer,
-                current_step,
+                dependencies,
                 color="white",
                 layout_type=layout_types[i],
             )
@@ -241,7 +262,11 @@ def ModelController(model, play_interval, current_step, reset_counter):
         solara.Style(
             """
         .widget-play {
-            height: 30px;
+            height: 35px;
+        }
+        .widget-play button {
+            color: white;
+            background-color: #1976D2;  // Solara blue color
         }
         """
         )
@@ -361,20 +386,15 @@ def make_text(renderer):
     return function
 
 
-def get_initial_grid_layout(layout_types):
-    grid_lay = []
-    y_coord = 0
-    for ii in range(len(layout_types)):
-        template_layout = {"h": 10, "i": 0, "moved": False, "w": 6, "y": 0, "x": 0}
-        if ii == 0:
-            grid_lay.append(template_layout)
-        else:
-            template_layout.update({"i": ii})
-            if ii % 2 == 0:
-                template_layout.update({"x": 0})
-                y_coord += 16
-            else:
-                template_layout.update({"x": 6})
-            template_layout.update({"y": y_coord})
-            grid_lay.append(template_layout)
-    return grid_lay
+def make_initial_grid_layout(layout_types):
+    return [
+        {
+            "i": i,
+            "w": 6,
+            "h": 10,
+            "moved": False,
+            "x": 6 * (i % 2),
+            "y": 16 * (i - i % 2),
+        }
+        for i in range(len(layout_types))
+    ]

mesa/model.py

@@ -3,6 +3,7 @@ The model class for Mesa framework.
 
 Core Objects: Model
 """
+
 # Mypy; for the `|` operator purpose
 # Remove this __future__ import once the oldest supported Python is 3.10
 from __future__ import annotations
@@ -55,7 +56,7 @@ class Model:
         if obj._seed is None:
             # We explicitly specify the seed here so that we know its value in
             # advance.
-            obj._seed = random.random()  # noqa: S311
+            obj._seed = random.random()
         obj.random = random.Random(obj._seed)
         # TODO: Remove these 2 lines just before Mesa 3.0
         obj._steps = 0
@@ -76,9 +77,6 @@ class Model:
         self._steps: int = 0
         self._time: TimeT = 0  # the model's clock
 
-        # Warning flags for current experimental features. These make sure a warning is only printed once per model.
-        self.agentset_experimental_warning_given = False
-
     @property
     def agents(self) -> AgentSet:
         """Provides an AgentSet of all agents in the model, combining agents from all types."""

mesa/space.py

@@ -71,6 +71,21 @@ def is_integer(x: Real) -> bool:
     return isinstance(x, _types_integer)
 
 
+def warn_if_agent_has_position_already(placement_func):
+    def wrapper(self, agent, *args, **kwargs):
+        if agent.pos is not None:
+            warnings.warn(
+                f"""Agent {agent.unique_id} is being placed with
+place_agent() despite already having the position {agent.pos}. In most
+cases, you'd want to clear the current position with remove_agent()
+before placing the agent again.""",
+                stacklevel=2,
+            )
+        placement_func(self, agent, *args, **kwargs)
+
+    return wrapper
+
+
 class _Grid:
     """Base class for a rectangular grid.
 
@@ -135,14 +150,12 @@ class _Grid:
         self._empties_built = True
 
     @overload
-    def __getitem__(self, index: int | Sequence[Coordinate]) -> list[GridContent]:
-        ...
+    def __getitem__(self, index: int | Sequence[Coordinate]) -> list[GridContent]: ...
 
     @overload
     def __getitem__(
         self, index: tuple[int | slice, int | slice]
-    ) -> GridContent | list[GridContent]:
-        ...
+    ) -> GridContent | list[GridContent]: ...
 
     def __getitem__(self, index):
         """Access contents from the grid."""
@@ -405,11 +418,9 @@ class _Grid:
         """
         return list(self.iter_cell_list_contents(cell_list))
 
-    def place_agent(self, agent: Agent, pos: Coordinate) -> None:
-        ...
+    def place_agent(self, agent: Agent, pos: Coordinate) -> None: ...
 
-    def remove_agent(self, agent: Agent) -> None:
-        ...
+    def remove_agent(self, agent: Agent) -> None: ...
 
     def move_agent(self, agent: Agent, pos: Coordinate) -> None:
         """Move an agent from its current position to a new position.
@@ -763,16 +774,14 @@ class _PropertyGrid(_Grid):
 
     Attributes:
         properties (dict): A dictionary mapping property layer names to PropertyLayer instances.
-        empty_mask: Returns a boolean mask indicating empty cells on the grid.
+        empty_mask (np.ndarray): A boolean array indicating empty cells on the grid.
 
     Methods:
         add_property_layer(property_layer): Adds a new property layer to the grid.
         remove_property_layer(property_name): Removes a property layer from the grid by its name.
         get_neighborhood_mask(pos, moore, include_center, radius): Generates a boolean mask of the neighborhood.
-        select_cells_by_properties(conditions, mask, return_list): Selects cells based on multiple property conditions,
-            optionally with a mask, returning either a list of coordinates or a mask.
-        select_extreme_value_cells(property_name, mode, mask, return_list): Selects cells with extreme values of a property,
-            optionally with a mask, returning either a list of coordinates or a mask.
+        select_cells(conditions, extreme_values, masks, only_empty, return_list): Selects cells based on multiple conditions,
+            extreme values, masks, with an option to select only empty cells, returning either a list of coordinates or a mask.
 
     Mask Usage:
         Several methods in this class accept a mask as an input, which is a NumPy ndarray of boolean values. This mask
@@ -978,6 +987,7 @@ class SingleGrid(_PropertyGrid):
                  the grid for empty spaces.
     """
 
+    @warn_if_agent_has_position_already
     def place_agent(self, agent: Agent, pos: Coordinate) -> None:
         """Place the agent at the specified location, and set its pos variable."""
         if self.is_cell_empty(pos):
@@ -1026,6 +1036,7 @@ class MultiGrid(_PropertyGrid):
         """Default value for new cell elements."""
         return []
 
+    @warn_if_agent_has_position_already
     def place_agent(self, agent: Agent, pos: Coordinate) -> None:
         """Place the agent at the specified location, and set its pos variable."""
         x, y = pos
@@ -1357,6 +1368,7 @@ class ContinuousSpace:
         self._agent_points = None
         self._index_to_agent = {}
 
+    @warn_if_agent_has_position_already
     def place_agent(self, agent: Agent, pos: FloatCoordinate) -> None:
         """Place a new agent in the space.
 
@@ -1517,6 +1529,7 @@ class NetworkGrid:
         """Default value for a new node."""
         return []
 
+    @warn_if_agent_has_position_already
     def place_agent(self, agent: Agent, node_id: int) -> None:
         """Place an agent in a node."""
         self.G.nodes[node_id]["agent"].append(agent)

mesa/time.py

@@ -25,9 +25,7 @@ Key concepts:
 # Remove this __future__ import once the oldest supported Python is 3.10
 from __future__ import annotations
 
-import heapq
 import warnings
-import weakref
 from collections import defaultdict
 from collections.abc import Iterable
 
@@ -393,46 +391,7 @@ class RandomActivationByType(BaseScheduler):
 
 class DiscreteEventScheduler(BaseScheduler):
     """
-    A scheduler for discrete event simulation in Mesa.
-
-    This scheduler manages events where each event is associated with a
-    specific time and agent. The scheduler advances time not in fixed
-    increments, but to the moment the next event is scheduled to occur.
-
-    This implementation uses a priority queue (heapq) to manage events. Each
-    event is a tuple of the form (time, random_value, agent), where:
-        - time (float): The scheduled time for the event.
-        - random_value (float): A secondary sorting criterion to randomize
-          the order of events that are scheduled for the same time.
-        - agent (Agent): The agent associated with the event.
-
-    The random value for secondary sorting ensures that when two events are
-    scheduled for the same time, their execution order is randomized, thus
-    preventing direct comparison issues between different types of agents and
-    maintaining the integrity of the simulation's randomness.
-
-    Attributes:
-        model (Model): The model instance associated with the scheduler.
-        event_queue (list): A priority queue of scheduled events.
-        time_step (int or float): The fixed time period by which the model advances
-                                  on each step. Defaults to 1.
-
-    Methods:
-        schedule_event(time, agent): Schedule an event for a specific time.
-        schedule_in(delay, agent): Schedule an event after a specified delay.
-        step(): Execute all events within the next time_step period.
-        get_next_event_time(): Returns the time of the next scheduled event.
-
-    Usage:
-        1. Instantiate the DiscreteEventScheduler with a model instance and a time_step period.
-        2. Add agents to the scheduler using schedule.add(). With schedule_now=True (default),
-              the first event for the agent will be scheduled immediately.
-        3. In the Agent step() method, schedule the next event for the agent
-              (using schedule_in or schedule_event).
-        3. Add self.schedule.step() to the model's step() method, as usual.
-
-    Now, with each model step, the scheduler will execute all events within the
-    next time_step period, and advance time one time_step forward.
+    This class has been deprecated and replaced by the functionality provided by experimental.devs
     """
 
     def __init__(self, model: Model, time_step: TimeT = 1) -> None:
@@ -444,72 +403,6 @@ class DiscreteEventScheduler(BaseScheduler):
 
         """
         super().__init__(model)
-        self.event_queue: list[tuple[TimeT, float, weakref.ref]] = []
-        self.time_step: TimeT = time_step  # Fixed time period for each step
-
-        warnings.warn(
-            "The DiscreteEventScheduler is experimental. It may be changed or removed in any and all future releases, including patch releases.\n"
-            "We would love to hear what you think about this new feature. If you have any thoughts, share them with us here: https://github.com/projectmesa/mesa/discussions/1923",
-            FutureWarning,
-            stacklevel=2,
+        raise Exception(
+            "DiscreteEventScheduler is deprecated in favor of the functionality provided by experimental.devs"
         )
-
-    def schedule_event(self, time: TimeT, agent: Agent) -> None:
-        """Schedule an event for an agent at a specific time."""
-        if time < self.time:
-            raise ValueError(
-                f"Scheduled time ({time}) must be >= the current time ({self.time})"
-            )
-        if agent not in self._agents:
-            raise ValueError(
-                "trying to schedule an event for agent which is not known to the scheduler"
-            )
-
-        # Create an event, sorted first on time, secondary on a random value
-        event = (time, self.model.random.random(), weakref.ref(agent))
-        heapq.heappush(self.event_queue, event)
-
-    def schedule_in(self, delay: TimeT, agent: Agent) -> None:
-        """Schedule an event for an agent after a specified delay."""
-        if delay < 0:
-            raise ValueError("Delay must be non-negative")
-        event_time = self.time + delay
-        self.schedule_event(event_time, agent)
-
-    def step(self) -> None:
-        """Execute the next event and advance the time."""
-        end_time = self.time + self.time_step
-
-        while self.event_queue and self.event_queue[0][0] <= end_time:
-            # Get the next event (ignore the random value during unpacking)
-            time, _, agent = heapq.heappop(self.event_queue)
-            agent = agent()  # unpack weakref
-
-            if agent:
-                # Advance time to the event's time
-                self.time = time
-                # Execute the event
-                agent.step()
-
-        # After processing events, advance time by the time_step
-        self.time = end_time
-        self.steps += 1
-
-    def get_next_event_time(self) -> TimeT | None:
-        """Returns the time of the next scheduled event."""
-        if not self.event_queue:
-            return None
-        return self.event_queue[0][0]
-
-    def add(self, agent: Agent, schedule_now: bool = True) -> None:
-        """Add an Agent object to the schedule and optionally schedule its first event.
-
-        Args:
-            agent: An Agent to be added to the schedule. Must have a step() method.
-            schedule_now: If True, schedules the first event for the agent immediately.
-        """
-        super().add(agent)  # Call the add method from BaseScheduler
-
-        if schedule_now:
-            # Schedule the first event immediately
-            self.schedule_event(self.time, agent)

{mesa-2.3.0.dev0.dist-info → mesa-2.3.0rc1.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.3
 Name: Mesa
-Version: 2.3.0.dev0
+Version: 2.3.0rc1
 Summary: Agent-based modeling (ABM) in Python
 Project-URL: homepage, https://github.com/projectmesa/mesa
 Project-URL: repository, https://github.com/projectmesa/mesa
@@ -34,6 +34,7 @@ Requires-Dist: tqdm
 Provides-Extra: dev
 Requires-Dist: coverage; extra == 'dev'
 Requires-Dist: pytest-cov; extra == 'dev'
+Requires-Dist: pytest-mock; extra == 'dev'
 Requires-Dist: pytest>=4.6; extra == 'dev'
 Requires-Dist: ruff~=0.1.1; extra == 'dev'
 Requires-Dist: sphinx; extra == 'dev'
@@ -162,7 +163,7 @@ If you would like to add a feature, please reach out via [ticket](https://github
 join a dev session (see [Mesa discussions](https://github.com/projectmesa/mesa/discussions)). A feature is most likely
 to be added if you build it!
 
-Don't forget to checkout the [Contributors guide](https://github.com/projectmesa/mesa/blob/main/CONTRIBUTING.rst).
+Don't forget to checkout the [Contributors guide](https://github.com/projectmesa/mesa/blob/main/CONTRIBUTING.md).
 
 ## Citing Mesa
 

mesa-2.3.0rc1.dist-info/RECORD

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{mesa-2.3.0.dev0.dist-info → mesa-2.3.0rc1.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
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+Generator: hatchling 1.24.1
 Root-Is-Purelib: true
 Tag: py3-none-any

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