MEDfl 0.1.7__py3-none-any.whl → 0.1.16__py3-none-any.whl

scripts/create_db.py

@@ -1,113 +1,131 @@
-import mysql.connector
-import pandas as pd
-from mysql.connector import Error
-from Medfl.LearningManager.utils import params
-
-try:
-    mydb = mysql.connector.connect(host="localhost", user="ouael", password="ouael")
-    mycursor = mydb.cursor()
-
-    # Create the 'MEDfl' database if it doesn't exist
-    mycursor.execute("CREATE DATABASE IF NOT EXISTS MEDfl")
-
-    # Select the 'MEDfl' database
-    mycursor.execute("USE MEDfl")
-
-    # Get the list of all tables in the database
-    mycursor.execute("SHOW TABLES")
-    tables = mycursor.fetchall()
-
-    
-
-
-    # Drop each table one by one
-    for table in tables:
-        table_name = table[0]
-        mycursor.execute(f"DROP TABLE IF EXISTS {table_name}")
-
-    # Create Networks table
-    mycursor.execute(
-        "CREATE TABLE Networks( \
-                     NetId INT NOT NULL AUTO_INCREMENT, \
-                     NetName VARCHAR(255), \
-                     PRIMARY KEY (NetId) \
-                     );"
-    )
-
-    # Create FLsetup table
-    mycursor.execute("CREATE TABLE FLsetup (\
-    FLsetupId int NOT NULL AUTO_INCREMENT,\
-    name varchar(255)  NOT NULL, \
-    description varchar(255) CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci NOT NULL,\
-    creation_date datetime NOT NULL,\
-    NetId int NOT NULL,\
-    column_name varchar(255) DEFAULT NULL,\
-    PRIMARY KEY (`FLsetupId`) \
-    )")
-
-    # Create Nodes table
-    mycursor.execute("CREATE TABLE Nodes ( \
-     NodeId int NOT NULL AUTO_INCREMENT,\
-     NodeName varchar(255) DEFAULT NULL,\
-     train tinyint(1) DEFAULT '1',\
-     NetId int DEFAULT NULL,\
-     PRIMARY KEY (NodeId)\
-    )")
-
-    data_df = pd.read_csv(params['path_to_master_csv'])
-    columns = data_df.columns.tolist()
-    column_map = {"object": "VARCHAR(255)", "int64": "INT", "float64": "FLOAT"}
-    sub_query = "".join(f"{col} {column_map[str(data_df[col].dtype)]}," for col in columns)
-
-    # Create Datasets table by getting columns from the master csv file
-    mycursor.execute(
-        f"CREATE TABLE DataSets( \
-                     DataSetId INT NOT NULL AUTO_INCREMENT, \
-                     DataSetName VARCHAR(255), \
-                     NodeId INT CHECK (NodeId = -1 OR NodeId IS NOT NULL),\
-                     {sub_query}\
-                     PRIMARY KEY (DataSetId)\
-                     )"
-    )
-
-    # Create FLpipeline table
-    mycursor.execute("CREATE TABLE FLpipeline(\
-     id int NOT NULL AUTO_INCREMENT,\
-     name varchar(255) NOT NULL, \
-     description varchar(255) NOT NULL,\
-     creation_date datetime NOT NULL,\
-     results longtext   NOT NULL,\
-     PRIMARY KEY (id)\
-    ) ")
-
-    # Create test results table
-    mycursor.execute("CREATE TABLE testResults(\
-     pipelineId INT,\
-     nodename VARCHAR(100) NOT NULL, \
-     confusionmatrix VARCHAR(255),\
-     accuracy LONG,\
-     sensivity LONG,\
-     ppv LONG,\
-     npv LONG,\
-     f1score LONG,\
-     fpr LONG,\
-     tpr LONG, \
-     PRIMARY KEY (pipelineId , nodename)\
-    ) ")
-
-    # Create FederatedDataset table
-    mycursor.execute("CREATE TABLE FedDatasets (\
-     FedId int NOT NULL AUTO_INCREMENT,\
-     FLsetupId int DEFAULT NULL,\
-     FLpipeId int DEFAULT NULL,\
-     name varchar(255) NOT NULL,\
-     PRIMARY KEY (FedId)\
-    )")
-
-    # Commit and close the cursor
-    mydb.commit()
-    mycursor.close()
-    mydb.close()
-
-except Error as e:
-    print(f"Error: {e}")
+import sys
+import mysql.connector
+import pandas as pd
+from mysql.connector import Error
+
+from configparser import ConfigParser
+import os
+
+def main(csv_file_path):
+    try:
+        # Get the directory of the current script
+        current_directory = os.path.dirname(os.path.abspath(__file__))
+
+        # Load configuration from the config file
+        config_file_path = os.path.join(current_directory, 'config.ini')
+
+        config = ConfigParser()
+        config.read(config_file_path)
+        mysql_config = config['mysql']
+
+        mydb = mysql.connector.connect(host=mysql_config['host'], user=mysql_config['user'], password=mysql_config['password'])
+        mycursor = mydb.cursor()
+
+        # Create the 'MEDfl' database if it doesn't exist
+        mycursor.execute("CREATE DATABASE IF NOT EXISTS MEDfl")
+
+        # Select the 'MEDfl' database
+        mycursor.execute("USE MEDfl")
+
+        # Get the list of all tables in the database
+        mycursor.execute("SHOW TABLES")
+        tables = mycursor.fetchall()
+
+        # Drop each table one by one
+        for table in tables:
+            table_name = table[0]
+            mycursor.execute(f"DROP TABLE IF EXISTS {table_name}")
+
+        # Create Networks table
+        mycursor.execute(
+            "CREATE TABLE Networks( \
+                         NetId INT NOT NULL AUTO_INCREMENT, \
+                         NetName VARCHAR(255), \
+                         PRIMARY KEY (NetId) \
+                         );"
+        )
+
+        # Create FLsetup table
+        mycursor.execute("CREATE TABLE FLsetup (\
+        FLsetupId int NOT NULL AUTO_INCREMENT,\
+        name varchar(255)  NOT NULL, \
+        description varchar(255) CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci NOT NULL,\
+        creation_date datetime NOT NULL,\
+        NetId int NOT NULL,\
+        column_name varchar(255) DEFAULT NULL,\
+        PRIMARY KEY (`FLsetupId`) \
+        )")
+
+        # Create Nodes table
+        mycursor.execute("CREATE TABLE Nodes ( \
+         NodeId int NOT NULL AUTO_INCREMENT,\
+         NodeName varchar(255) DEFAULT NULL,\
+         train tinyint(1) DEFAULT '1',\
+         NetId int DEFAULT NULL,\
+         PRIMARY KEY (NodeId)\
+        )")
+
+        data_df = pd.read_csv(csv_file_path)
+        columns = data_df.columns.tolist()
+        column_map = {"object": "VARCHAR(255)", "int64": "INT", "float64": "FLOAT"}
+        sub_query = "".join(f"{col} {column_map[str(data_df[col].dtype)]}," for col in columns)
+
+        # Create Datasets table by getting columns from the master csv file
+        mycursor.execute(
+            f"CREATE TABLE DataSets( \
+                         DataSetId INT NOT NULL AUTO_INCREMENT, \
+                         DataSetName VARCHAR(255), \
+                         NodeId INT CHECK (NodeId = -1 OR NodeId IS NOT NULL),\
+                         {sub_query}\
+                         PRIMARY KEY (DataSetId)\
+                         )"
+        )
+
+        # Create FLpipeline table
+        mycursor.execute("CREATE TABLE FLpipeline(\
+         id int NOT NULL AUTO_INCREMENT,\
+         name varchar(255) NOT NULL, \
+         description varchar(255) NOT NULL,\
+         creation_date datetime NOT NULL,\
+         results longtext   NOT NULL,\
+         PRIMARY KEY (id)\
+        ) ")
+
+        # Create test results table
+        mycursor.execute("CREATE TABLE testResults(\
+         pipelineId INT,\
+         nodename VARCHAR(100) NOT NULL, \
+         confusionmatrix VARCHAR(255),\
+         accuracy LONG,\
+         sensivity LONG,\
+         ppv LONG,\
+         npv LONG,\
+         f1score LONG,\
+         fpr LONG,\
+         tpr LONG, \
+         PRIMARY KEY (pipelineId , nodename)\
+        ) ")
+
+        # Create FederatedDataset table
+        mycursor.execute("CREATE TABLE FedDatasets (\
+         FedId int NOT NULL AUTO_INCREMENT,\
+         FLsetupId int DEFAULT NULL,\
+         FLpipeId int DEFAULT NULL,\
+         name varchar(255) NOT NULL,\
+         PRIMARY KEY (FedId)\
+        )")
+
+        # Commit and close the cursor
+        mydb.commit()
+        mycursor.close()
+        mydb.close()
+
+    except Error as e:
+        print(f"Error: {e}")
+
+if __name__ == "__main__":
+    if len(sys.argv) != 2:
+        print("Usage: python script.py <path_to_csv_file>")
+        sys.exit(1)
+    csv_file_path = sys.argv[1]
+    main(csv_file_path)

Medfl-0.1.7.dist-info/RECORD

@@ -1,31 +0,0 @@
-Medfl/__init__.py,sha256=iJB4XxXxnyh_pnLFKAz3USENmFuMIuEwbLTKDiZqL3M,56
-Medfl/LearningManager/__init__.py,sha256=iW5z0BKFCW8ctIwFxmdTBDK2SIM0chTO39j4Tmf69KE,345
-Medfl/LearningManager/client.py,sha256=t3fQ8SugGSYJ1cqN9vfB-KWj-wzHiqPLuCFkJVl0RY8,5933
-Medfl/LearningManager/dynamicModal.py,sha256=q8u7xPpj_TdZnSr8kYj0Xx7Sdz-diXsKBAfVce8-qSU,10534
-Medfl/LearningManager/federated_dataset.py,sha256=4ZnZA1YDx1JG51qE7CdlhwNQdKPxYX54iiMBRgp02dI,1925
-Medfl/LearningManager/flpipeline.py,sha256=Fd44ZDLgvUCZQ5OJLMo8pcMjzGpT9wxiBJRBQg-RCwE,6958
-Medfl/LearningManager/model.py,sha256=vp8FIMxBdz3FTF5wJaea2IO_WGeANLZgBxTKVe3gW3Q,7456
-Medfl/LearningManager/params_optimiser.py,sha256=4uiR2ly9dsgJXjcsvX8hoxoUdTPaAvxI4k8MRgbHdgA,17618
-Medfl/LearningManager/plot.py,sha256=A6Z8wC8J-H-OmWBPKqwK5eiTB9vzOBGMaFv1SaNA9Js,7698
-Medfl/LearningManager/server.py,sha256=8AKBGYLC0PXa7jAoy29orixhgB9bF3q0TEQjxssDvow,7026
-Medfl/LearningManager/strategy.py,sha256=BHXpwmt7jx07y45YLUs8FZry2gYQbpiV4vNbHhsksQ4,3435
-Medfl/LearningManager/utils.py,sha256=nZDelVsuyctrzjQIbIo057FwBaEpNrnUimMtZkw--wY,7389
-Medfl/NetManager/__init__.py,sha256=sMmONAOCn9sEYnaeokXxfiBhTlkkivwo1frOiwzIY74,237
-Medfl/NetManager/database_connector.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-Medfl/NetManager/dataset.py,sha256=X5zzlWT7uWdsHkrTcSfJa_R6Z_uZwgjb1wQkpuog2z4,2691
-Medfl/NetManager/flsetup.py,sha256=eoJbQHV9RKvEog3jq8NlT-IsAoQli0EOFKpr7sZV0QE,11001
-Medfl/NetManager/net_helper.py,sha256=r4I3ZwhjEHweV5DaYc4lamucCe_OdB-gevteVeTiuiA,6108
-Medfl/NetManager/net_manager_queries.py,sha256=2jEIJ6qWLJv8AgusqTnRjJwq_keU6M3V0v09Azwf9fs,4190
-Medfl/NetManager/network.py,sha256=nRvdrNheE5gi84wNbVS09T1jMEq9YADYbV9M_DryP3A,5091
-Medfl/NetManager/node.py,sha256=c3DxcOXGfVmQvz-tzT2GKFWW7V2rcFuuw44uKOvdm_k,6153
-Medfl-0.1.7.data/scripts/setup_mysql.sh,sha256=r4ygRl7zdasUSZT-ccC1Tjtt6GKDS5Puza9hCec2Cns,538
-alembic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-alembic/env.py,sha256=-aSZ6SlJeK1ZeqHgM-54hOi9LhJRFP0SZGjut-JnY-4,1588
-scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-scripts/base.py,sha256=y9yQNC6PkqoEpdrzAW9Qgbc7EAW8yxIOPH2_hQiCdI0,749
-scripts/config.ini,sha256=Nq1eQA7NMN8lcchpnTuC8xMWmc-WSs5ZxMvW6EVrNCE,83
-scripts/create_db.py,sha256=NYysjkiMWNjEawpOJL8iLAwNGUk4YITUMudiJgLQIGA,3364
-Medfl-0.1.7.dist-info/METADATA,sha256=FVqlWBZPA1-E0f0Pb2dFE15W0231PL85O5rLl27rBeM,5449
-Medfl-0.1.7.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-Medfl-0.1.7.dist-info/top_level.txt,sha256=CmLt1TC7PJj-V55rhffMZ9LSOiuSaaEbz9FJm_zOw_E,22
-Medfl-0.1.7.dist-info/RECORD,,