MEDfl 0.1.34__py3-none-any.whl → 0.1.35__py3-none-any.whl

{MEDfl-0.1.34.dist-info → MEDfl-0.1.35.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: MEDfl
-Version: 0.1.34
+Version: 0.1.35
 Summary: Python Open-source package for simulating federated learning and differential privacy
 Home-page: https://github.com/MEDomics-UdeS/MEDfl
 Author: MEDomics consortium

MEDfl-0.1.35.dist-info/RECORD

@@ -0,0 +1,30 @@
+MEDfl/__init__.py,sha256=pMyTkws4slDkLQgPpPdKoWdQf1rZGHXAlNxfPFFZM-I,81
+MEDfl/LearningManager/__init__.py,sha256=_lfMR4HOx4wmJnGKCowXnln9oKQEkOZexUzZRBSgfZI,334
+MEDfl/LearningManager/client.py,sha256=9WyLYCsI9JuHjneLbbzDf7HtzjYINuLfqwkbxOsrBrE,6083
+MEDfl/LearningManager/dynamicModal.py,sha256=0mTvDJlss0uSJ3_EXOuL_d-zRmFyXaKB4W4ql-uEX8Y,10821
+MEDfl/LearningManager/federated_dataset.py,sha256=fQqIbhO6LSk16Ob9z6RohaZ8X71Ff-yueynjulrl4M0,2141
+MEDfl/LearningManager/flpipeline.py,sha256=M4-OL4nlogv08J_YsyDsGHXR6xe8BWx4HIsuL1QyUvY,7303
+MEDfl/LearningManager/model.py,sha256=DA7HP34Eq1Ra65OlkBmjH9d2MD7OEbsOhfxD48l4QOk,7679
+MEDfl/LearningManager/params.yaml,sha256=5I-NljhnSaqzjkWVNzrOtrB8z7tnHBKiBmY-mKGhBQM,450
+MEDfl/LearningManager/params_optimiser.py,sha256=pjhDskhSPuca-jnarYoJcFVBvRkdD9tD3992q_eMPSE,18060
+MEDfl/LearningManager/plot.py,sha256=iPqMV9rVd7hquoFixDL20OzXI5bMpBW41bkVmTKIWtE,7927
+MEDfl/LearningManager/server.py,sha256=7edxPkZ9Ju3Mep_BSHQpUNgW9HKfCui3_l996buJVlU,7258
+MEDfl/LearningManager/strategy.py,sha256=n0asQajkHfGLDX3QbbV5qntQA-xuJZU8Z92XccZENsA,3517
+MEDfl/LearningManager/utils.py,sha256=vEhkpyC7iLsn4wp1wDh7GzAn5MCJ7T69jkS9lfmKA1Y,9936
+MEDfl/NetManager/__init__.py,sha256=kR9muJ9fdGMglVmWaraAMiJia_TiTSUcZaNgHS6Cglg,269
+MEDfl/NetManager/database_connector.py,sha256=JKfFLom7I4zuykb8m7aY4cUYZy4j0-i9w3R_jkPzjXY,1516
+MEDfl/NetManager/dataset.py,sha256=eEuVzCp5dGD4tvDVKq6jlSReecge7T20ByG4d7_cnXU,2869
+MEDfl/NetManager/flsetup.py,sha256=CS7531I08eLm6txMIDWFMCIrPP-dNpOLBTaR2BR6X0c,11754
+MEDfl/NetManager/net_helper.py,sha256=T5Y-03SVskK8oXXIpiXzASyEDPQJbcuGVpIS9FnmzI8,7066
+MEDfl/NetManager/net_manager_queries.py,sha256=bJ7V6NZAjLM0sEPrczN7vUeB7sMZZzYZjO-rnUCpQPc,4228
+MEDfl/NetManager/network.py,sha256=D7liCx-1PGx9Z3pctI1_NOGG--gGtvzfr_-BCOdwsOg,7023
+MEDfl/NetManager/node.py,sha256=Azye74P4ZUDQxPrQOId4BK8hX-9RzFtN2Ji8NXbDCEM,6726
+MEDfl/scripts/__init__.py,sha256=wAcxrhYRhcTI3CAmCCd4D2psvimuig-DPXQyij0BZT4,45
+MEDfl/scripts/base.py,sha256=pR7StIt3PpX30aoh53gMkpeNJMHytAPhdc7N09tCITA,781
+MEDfl/scripts/create_db.py,sha256=PgA6N68iTSfnrt6zy7FDZX2lLjQQ7Ual1Y0efve8gf4,3943
+alembic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+alembic/env.py,sha256=a4zJAzPNLHnIrUlXCqf_8vuAlFu0pceFJJKM1PQaOI4,1649
+MEDfl-0.1.35.dist-info/METADATA,sha256=vejjqqCuXCQBa7-TBHUQKONVUJpt62uF8ezlz-ubc4I,5582
+MEDfl-0.1.35.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+MEDfl-0.1.35.dist-info/top_level.txt,sha256=dIL9X8HOFuaVSzpg40DVveDPrymWRoShHtspH7kkjdI,14
+MEDfl-0.1.35.dist-info/RECORD,,

MEDfl-0.1.34.dist-info/RECORD

@@ -1,34 +0,0 @@
-Medfl/__init__.py,sha256=pMyTkws4slDkLQgPpPdKoWdQf1rZGHXAlNxfPFFZM-I,81
-Medfl/LearningManager/__init__.py,sha256=_lfMR4HOx4wmJnGKCowXnln9oKQEkOZexUzZRBSgfZI,334
-Medfl/LearningManager/client.py,sha256=9WyLYCsI9JuHjneLbbzDf7HtzjYINuLfqwkbxOsrBrE,6083
-Medfl/LearningManager/dynamicModal.py,sha256=0mTvDJlss0uSJ3_EXOuL_d-zRmFyXaKB4W4ql-uEX8Y,10821
-Medfl/LearningManager/federated_dataset.py,sha256=fQqIbhO6LSk16Ob9z6RohaZ8X71Ff-yueynjulrl4M0,2141
-Medfl/LearningManager/flpipeline.py,sha256=M4-OL4nlogv08J_YsyDsGHXR6xe8BWx4HIsuL1QyUvY,7303
-Medfl/LearningManager/model.py,sha256=DA7HP34Eq1Ra65OlkBmjH9d2MD7OEbsOhfxD48l4QOk,7679
-Medfl/LearningManager/params.yaml,sha256=5I-NljhnSaqzjkWVNzrOtrB8z7tnHBKiBmY-mKGhBQM,450
-Medfl/LearningManager/params_optimiser.py,sha256=pjhDskhSPuca-jnarYoJcFVBvRkdD9tD3992q_eMPSE,18060
-Medfl/LearningManager/plot.py,sha256=iPqMV9rVd7hquoFixDL20OzXI5bMpBW41bkVmTKIWtE,7927
-Medfl/LearningManager/server.py,sha256=7edxPkZ9Ju3Mep_BSHQpUNgW9HKfCui3_l996buJVlU,7258
-Medfl/LearningManager/strategy.py,sha256=n0asQajkHfGLDX3QbbV5qntQA-xuJZU8Z92XccZENsA,3517
-Medfl/LearningManager/utils.py,sha256=vEhkpyC7iLsn4wp1wDh7GzAn5MCJ7T69jkS9lfmKA1Y,9936
-Medfl/NetManager/__init__.py,sha256=kR9muJ9fdGMglVmWaraAMiJia_TiTSUcZaNgHS6Cglg,269
-Medfl/NetManager/database_connector.py,sha256=JKfFLom7I4zuykb8m7aY4cUYZy4j0-i9w3R_jkPzjXY,1516
-Medfl/NetManager/dataset.py,sha256=eEuVzCp5dGD4tvDVKq6jlSReecge7T20ByG4d7_cnXU,2869
-Medfl/NetManager/flsetup.py,sha256=CS7531I08eLm6txMIDWFMCIrPP-dNpOLBTaR2BR6X0c,11754
-Medfl/NetManager/net_helper.py,sha256=T5Y-03SVskK8oXXIpiXzASyEDPQJbcuGVpIS9FnmzI8,7066
-Medfl/NetManager/net_manager_queries.py,sha256=bJ7V6NZAjLM0sEPrczN7vUeB7sMZZzYZjO-rnUCpQPc,4228
-Medfl/NetManager/network.py,sha256=D7liCx-1PGx9Z3pctI1_NOGG--gGtvzfr_-BCOdwsOg,7023
-Medfl/NetManager/node.py,sha256=Azye74P4ZUDQxPrQOId4BK8hX-9RzFtN2Ji8NXbDCEM,6726
-Medfl/scripts/__init__.py,sha256=wAcxrhYRhcTI3CAmCCd4D2psvimuig-DPXQyij0BZT4,45
-Medfl/scripts/base.py,sha256=pR7StIt3PpX30aoh53gMkpeNJMHytAPhdc7N09tCITA,781
-Medfl/scripts/create_db.py,sha256=PgA6N68iTSfnrt6zy7FDZX2lLjQQ7Ual1Y0efve8gf4,3943
-alembic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-alembic/env.py,sha256=a4zJAzPNLHnIrUlXCqf_8vuAlFu0pceFJJKM1PQaOI4,1649
-scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-scripts/base.py,sha256=pR7StIt3PpX30aoh53gMkpeNJMHytAPhdc7N09tCITA,781
-scripts/config.ini,sha256=tDQQlpwZbCFQuSS017yjEiLglLihp6wETbWtNrSWeAA,82
-scripts/create_db.py,sha256=iWE1z33rU_KbIeqoVzdWLhDRLk00TcRf2iYuqpDzOjw,4494
-MEDfl-0.1.34.dist-info/METADATA,sha256=Me1TpcUofzpymc1hUwF7TusladrKM9pEX05xMza1nNk,5582
-MEDfl-0.1.34.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-MEDfl-0.1.34.dist-info/top_level.txt,sha256=dIL9X8HOFuaVSzpg40DVveDPrymWRoShHtspH7kkjdI,14
-MEDfl-0.1.34.dist-info/RECORD,,

scripts/base.py

@@ -1,30 +0,0 @@
-import mysql.connector
-from sqlalchemy import create_engine, text
-from configparser import ConfigParser
-import yaml
-import pkg_resources
-import os
-
-# Get the directory of the current script
-current_directory = os.path.dirname(os.path.abspath(__file__))
-
-# Load configuration from the config file
-config_file_path = os.path.join(current_directory, 'db_config.ini')
-
-config = ConfigParser()
-config.read(config_file_path)
-mysql_config = config['mysql']
-
-
-
-connection_string = (
-    f"mysql+mysqlconnector://{mysql_config['user']}:{mysql_config['password']}@"
-    f"{mysql_config['host']}:{mysql_config['port']}/{mysql_config['database']}"
-)
-
-eng = create_engine(
-    connection_string,
-    execution_options={"autocommit": True},
-)
-
-my_eng = eng.connect()

scripts/config.ini

@@ -1,6 +0,0 @@
-[mysql]
-host = localhost
-port = 3306
-user = root
-password = 
-database = MEDfl

scripts/create_db.py

@@ -1,133 +0,0 @@
-import sys
-import mysql.connector
-import pandas as pd
-from mysql.connector import Error
-
-from configparser import ConfigParser
-import os
-
-def main(csv_file_path):
-    try:
-        # Get the directory of the current script
-        current_directory = os.path.dirname(os.path.abspath(__file__))
-
-        # Load configuration from the config file
-        config_file_path = os.path.join(current_directory, 'db_config.ini')
-
-        config = ConfigParser()
-        config.read(config_file_path)
-        mysql_config = config['mysql']
-
-        print('Im here !')
-
-        mydb = mysql.connector.connect(host=mysql_config['host'], user=mysql_config['user'], password=mysql_config['password'])
-        mycursor = mydb.cursor()
-
-        # Create the 'MEDfl' database if it doesn't exist
-        mycursor.execute("CREATE DATABASE IF NOT EXISTS MEDfl")
-
-        # Select the 'MEDfl' database
-        mycursor.execute("USE MEDfl")
-
-        # Get the list of all tables in the database
-        mycursor.execute("SHOW TABLES")
-        tables = mycursor.fetchall()
-
-        # Drop each table one by one
-        for table in tables:
-            table_name = table[0]
-            mycursor.execute(f"DROP TABLE IF EXISTS {table_name}")
-
-        # Create Networks table
-        mycursor.execute(
-            "CREATE TABLE Networks( \
-                         NetId INT NOT NULL AUTO_INCREMENT, \
-                         NetName VARCHAR(255), \
-                         PRIMARY KEY (NetId) \
-                         );"
-        )
-
-        # Create FLsetup table
-        mycursor.execute("CREATE TABLE FLsetup (\
-        FLsetupId int NOT NULL AUTO_INCREMENT,\
-        name varchar(255)  NOT NULL, \
-        description varchar(255) CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci NOT NULL,\
-        creation_date datetime NOT NULL,\
-        NetId int NOT NULL,\
-        column_name varchar(255) DEFAULT NULL,\
-        PRIMARY KEY (`FLsetupId`) \
-        )")
-
-        # Create Nodes table
-        mycursor.execute("CREATE TABLE Nodes ( \
-         NodeId int NOT NULL AUTO_INCREMENT,\
-         NodeName varchar(255) DEFAULT NULL,\
-         train tinyint(1) DEFAULT '1',\
-         NetId int DEFAULT NULL,\
-         PRIMARY KEY (NodeId)\
-        )")
-
-        data_df = pd.read_csv(csv_file_path)
-        columns = data_df.columns.tolist()
-        column_map = {"object": "VARCHAR(255)", "int64": "INT", "float64": "FLOAT"}
-        sub_query = "".join(f"{col} {column_map[str(data_df[col].dtype)]}," for col in columns)
-
-        # Create Datasets table by getting columns from the master csv file
-        mycursor.execute(
-            f"CREATE TABLE DataSets( \
-                         DataSetId INT NOT NULL AUTO_INCREMENT, \
-                         DataSetName VARCHAR(255), \
-                         NodeId INT CHECK (NodeId = -1 OR NodeId IS NOT NULL),\
-                         {sub_query}\
-                         PRIMARY KEY (DataSetId)\
-                         )"
-        )
-
-        # Create FLpipeline table
-        mycursor.execute("CREATE TABLE FLpipeline(\
-         id int NOT NULL AUTO_INCREMENT,\
-         name varchar(255) NOT NULL, \
-         description varchar(255) NOT NULL,\
-         creation_date datetime NOT NULL,\
-         results longtext   NOT NULL,\
-         PRIMARY KEY (id)\
-        ) ")
-
-        # Create test results table
-        mycursor.execute("CREATE TABLE testResults(\
-         pipelineId INT,\
-         nodename VARCHAR(100) NOT NULL, \
-         confusionmatrix VARCHAR(255),\
-         accuracy LONG,\
-         sensivity LONG,\
-         ppv LONG,\
-         npv LONG,\
-         f1score LONG,\
-         fpr LONG,\
-         tpr LONG, \
-         PRIMARY KEY (pipelineId , nodename)\
-        ) ")
-
-        # Create FederatedDataset table
-        mycursor.execute("CREATE TABLE FedDatasets (\
-         FedId int NOT NULL AUTO_INCREMENT,\
-         FLsetupId int DEFAULT NULL,\
-         FLpipeId int DEFAULT NULL,\
-         name varchar(255) NOT NULL,\
-         PRIMARY KEY (FedId)\
-        )")
-
-        # Commit and close the cursor
-        mydb.commit()
-        mycursor.close()
-        mydb.close()
-
-    except Error as e:
-        print(f"Error: {e}")
-
-if __name__ == "__main__":
-    if len(sys.argv) != 2:
-        print("Usage: python script.py <path_to_csv_file>")
-        sys.exit(1)
-    csv_file_path = sys.argv[1]
-    main(csv_file_path)