MEDfl 0.1.24__py3-none-any.whl → 0.1.26__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {Medfl-0.1.24.dist-info → MEDfl-0.1.26.dist-info}/METADATA +2 -2
- MEDfl-0.1.26.dist-info/RECORD +32 -0
- {Medfl-0.1.24.dist-info → MEDfl-0.1.26.dist-info}/top_level.txt +1 -1
- Medfl/LearningManager/__init__.py +1 -1
- Medfl/LearningManager/client.py +1 -1
- Medfl/LearningManager/federated_dataset.py +3 -3
- Medfl/LearningManager/flpipeline.py +5 -5
- Medfl/LearningManager/params_optimiser.py +4 -4
- Medfl/LearningManager/server.py +4 -2
- Medfl/LearningManager/utils.py +3 -3
- Medfl/NetManager/__init__.py +1 -1
- Medfl/NetManager/database_connector.py +1 -1
- Medfl/NetManager/dataset.py +1 -1
- Medfl/NetManager/flsetup.py +3 -3
- Medfl/NetManager/net_helper.py +20 -36
- Medfl/NetManager/network.py +13 -7
- Medfl/NetManager/node.py +13 -19
- scripts/create_db.py +2 -0
- Medfl-0.1.24.dist-info/RECORD +0 -32
- {Medfl-0.1.24.data → MEDfl-0.1.26.data}/scripts/setup_mysql.sh +0 -0
- {Medfl-0.1.24.dist-info → MEDfl-0.1.26.dist-info}/WHEEL +0 -0
@@ -0,0 +1,32 @@
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MEDfl-0.1.26.data/scripts/setup_mysql.sh,sha256=PXl271yvYBrXwrZ7P0tsYHnGkOubKvRaFee4MnzsSko,560
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Medfl/__init__.py,sha256=wamSaVIS4RoIHcTCLQPKQ5f8odcy87mRCKyRR7-Qpu4,57
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Medfl/LearningManager/__init__.py,sha256=mvlAmHEHljXGaB6Ij0EPN0Txw21qX25ELK3X7QkoVwA,358
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Medfl/LearningManager/client.py,sha256=9WyLYCsI9JuHjneLbbzDf7HtzjYINuLfqwkbxOsrBrE,6083
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Medfl/LearningManager/dynamicModal.py,sha256=0mTvDJlss0uSJ3_EXOuL_d-zRmFyXaKB4W4ql-uEX8Y,10821
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Medfl/LearningManager/federated_dataset.py,sha256=fQqIbhO6LSk16Ob9z6RohaZ8X71Ff-yueynjulrl4M0,2141
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Medfl/LearningManager/flpipeline.py,sha256=M4-OL4nlogv08J_YsyDsGHXR6xe8BWx4HIsuL1QyUvY,7303
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Medfl/LearningManager/model.py,sha256=DA7HP34Eq1Ra65OlkBmjH9d2MD7OEbsOhfxD48l4QOk,7679
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Medfl/LearningManager/params.yaml,sha256=5I-NljhnSaqzjkWVNzrOtrB8z7tnHBKiBmY-mKGhBQM,450
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Medfl/LearningManager/params_optimiser.py,sha256=pjhDskhSPuca-jnarYoJcFVBvRkdD9tD3992q_eMPSE,18060
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Medfl/LearningManager/plot.py,sha256=iPqMV9rVd7hquoFixDL20OzXI5bMpBW41bkVmTKIWtE,7927
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Medfl/LearningManager/server.py,sha256=7edxPkZ9Ju3Mep_BSHQpUNgW9HKfCui3_l996buJVlU,7258
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Medfl/LearningManager/strategy.py,sha256=n0asQajkHfGLDX3QbbV5qntQA-xuJZU8Z92XccZENsA,3517
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Medfl/LearningManager/utils.py,sha256=gAFkA4cUimMaUh40lvveL8b7NvB8zPjWonwZKVk8HpE,9342
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Medfl/NetManager/__init__.py,sha256=RhO9Ya6wXOdM6qO58wjTD-lNL7-q8KvPDvSccYP9wUY,246
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Medfl/NetManager/database_connector.py,sha256=zZYOYD1ZGpdOxiH_HuMFnofjJimOcnoZ02fdD0Rkh9E,1538
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Medfl/NetManager/dataset.py,sha256=eEuVzCp5dGD4tvDVKq6jlSReecge7T20ByG4d7_cnXU,2869
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Medfl/NetManager/flsetup.py,sha256=CS7531I08eLm6txMIDWFMCIrPP-dNpOLBTaR2BR6X0c,11754
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Medfl/NetManager/net_helper.py,sha256=leXwpkDewj-_bXZUO3S_DscELnyZogb6jmz6Bjrsmag,6860
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Medfl/NetManager/net_manager_queries.py,sha256=2dfhba0iuh40kVoC7am-vC4Hlrvr-zfJ5ESymsI1Kps,4327
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Medfl/NetManager/network.py,sha256=NPHaSSLLA9FIBkqg3Il8g7VDQ1Ds8rH4d91srT6wUNI,5730
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Medfl/NetManager/node.py,sha256=HQPKy-RHs5SkVxPo5EdjD-W9XK--TaFXa49ooua5_kU,6344
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alembic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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alembic/env.py,sha256=a4zJAzPNLHnIrUlXCqf_8vuAlFu0pceFJJKM1PQaOI4,1649
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scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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scripts/base.py,sha256=pR7StIt3PpX30aoh53gMkpeNJMHytAPhdc7N09tCITA,781
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scripts/config.ini,sha256=tDQQlpwZbCFQuSS017yjEiLglLihp6wETbWtNrSWeAA,82
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scripts/create_db.py,sha256=iWE1z33rU_KbIeqoVzdWLhDRLk00TcRf2iYuqpDzOjw,4494
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MEDfl-0.1.26.dist-info/METADATA,sha256=cX617jlzpKbpwieidkfDyDT4Vi4sK1NMj87BFCc1qZ8,5580
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MEDfl-0.1.26.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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MEDfl-0.1.26.dist-info/top_level.txt,sha256=hMAmSbfVxxQBmDx0uaQeXYlSrdC42iD58FyzJGl2lAs,22
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MEDfl-0.1.26.dist-info/RECORD,,
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Medfl/LearningManager/client.py
CHANGED
@@ -72,7 +72,7 @@ class FlowerClient(fl.client.NumPyClient):
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raise TypeError("cid argument must be a string")
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if not isinstance(self.local_model, Model):
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raise TypeError("local_model argument must be a
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raise TypeError("local_model argument must be a MEDfl.LearningManager.model.Model")
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if not isinstance(self.trainloader, DataLoader):
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raise TypeError("trainloader argument must be a torch.utils.data.dataloader")
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from
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from
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from
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from MEDfl.NetManager.net_helper import *
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from MEDfl.NetManager.net_manager_queries import *
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from MEDfl.NetManager.database_connector import DatabaseManager
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class FederatedDataset:
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def __init__(
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from torch.utils.data import DataLoader, TensorDataset
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import torch
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from MEDfl.LearningManager.server import FlowerServer
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from MEDfl.LearningManager.utils import params, test
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from MEDfl.NetManager.net_helper import get_flpipeline_from_name
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from MEDfl.NetManager.net_manager_queries import (CREATE_FLPIPELINE_QUERY,
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DELETE_FLPIPELINE_QUERY , CREATE_TEST_RESULTS_QUERY)
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from
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from MEDfl.NetManager.database_connector import DatabaseManager
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def create_query(name, description, creation_date, result):
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query = text(
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from sklearn.metrics import make_scorer, precision_score, recall_score, accuracy_score, f1_score,roc_auc_score, balanced_accuracy_score
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import optuna
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from MEDfl.LearningManager.model import Model
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from MEDfl.LearningManager.strategy import Strategy
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from MEDfl.LearningManager.server import FlowerServer
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from MEDfl.LearningManager.flpipeline import FLpipeline
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class BinaryClassifier(nn.Module):
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def __init__(self, input_size, num_layers, layer_size):
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Medfl/LearningManager/server.py
CHANGED
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f"cuda:{int(cid) % 4}" if torch.cuda.is_available() else "cpu"
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)
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client_model = copy.deepcopy(self.global_model)
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trainloader = self.fed_dataset.trainloaders[int(cid)]
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valloader = self.fed_dataset.valloaders[int(cid)]
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# this helps in making plots
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client = FlowerClient(
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cid, client_model, trainloader, valloader, self.diff_priv
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)
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ray_init_args = {"include_dashboard": False
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, "object_store_memory": 78643200
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}
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self.fed_dataset.eng = None
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history = fl.simulation.start_simulation(
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client_fn=self.client_fn,
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num_clients=self.num_clients,
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Medfl/LearningManager/utils.py
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from yaml.loader import SafeLoader
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from MEDfl.NetManager.database_connector import DatabaseManager
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# from scripts.base import *
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import json
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def load_db_config():
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config = os.environ.get('MEDfl_DB_CONFIG')
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if config:
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return ast.literal_eval(config)
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config = configparser.ConfigParser()
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config.read(config_path)
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if (config['mysql']):
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os.environ['MEDfl_DB_CONFIG'] = str(dict(config['mysql']))
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raise ValueError(f"mysql key not found in file '{config_path}'")
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Medfl/NetManager/__init__.py
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Medfl/NetManager/dataset.py
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from .net_helper import *
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from .net_manager_queries import (DELETE_DATASET, INSERT_DATASET,
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SELECT_ALL_DATASET_NAMES)
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from MEDfl.NetManager.database_connector import DatabaseManager
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class DataSet:
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def __init__(self, name: str, path: str, engine=None):
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Medfl/NetManager/flsetup.py
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from MEDfl.LearningManager.federated_dataset import FederatedDataset
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from .net_manager_queries import * # Import the sql_queries module
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from .network import Network
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class FLsetup:
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def create(self):
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Medfl/NetManager/net_helper.py
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def is_str(data_df, row, x):
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sql_query = text("SELECT EXISTS (SELECT TABLE_NAME FROM information_schema.TABLES WHERE TABLE_NAME = 'MasterDataset')")
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result = my_eng.execute(sql_query)
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exists = result.scalar()
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return exists
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Medfl/NetManager/network.py
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# src/MEDfl/NetManager/network.py
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from .net_manager_queries import (CREATE_MASTER_DATASET_TABLE_QUERY,
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"""
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query = text(LIST_ALL_NODES_QUERY.format(name=self.name))
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|
+
result_df = pd.DataFrame(result_proxy.fetchall(), columns=result_proxy.keys())
|
112
|
+
return result_df
|
110
113
|
|
111
114
|
def create_master_dataset(self, path_to_csv: str = params['path_to_master_csv']):
|
112
115
|
"""
|
@@ -165,4 +168,7 @@ class Network:
|
|
165
168
|
db_manager.connect() ;
|
166
169
|
my_eng = db_manager.get_connection() ;
|
167
170
|
|
168
|
-
|
171
|
+
result_proxy = my_eng.execute("SELECT * FROM Networks")
|
172
|
+
result = result_proxy.fetchall()
|
173
|
+
return result
|
174
|
+
|
Medfl/NetManager/node.py
CHANGED
@@ -2,8 +2,8 @@ import pandas as pd
|
|
2
2
|
|
3
3
|
from .net_helper import *
|
4
4
|
from .net_manager_queries import *
|
5
|
-
from
|
6
|
-
from
|
5
|
+
from MEDfl.LearningManager.utils import params
|
6
|
+
from MEDfl.NetManager.database_connector import DatabaseManager
|
7
7
|
|
8
8
|
class Node:
|
9
9
|
"""
|
@@ -74,10 +74,12 @@ class Node:
|
|
74
74
|
print("MasterDataset doesn't exist")
|
75
75
|
else:
|
76
76
|
columns = data_df.columns.tolist()
|
77
|
+
|
77
78
|
# get master_dataset columns
|
78
|
-
|
79
|
-
|
80
|
-
|
79
|
+
result_proxy = self.engine.execute(SELECT_MASTER_COLUMNS_QUERY)
|
80
|
+
master_table_columns = result_proxy.keys()
|
81
|
+
|
82
|
+
|
81
83
|
assert [x == y for x, y in zip(master_table_columns, columns)]
|
82
84
|
|
83
85
|
def update_node(self):
|
@@ -94,21 +96,13 @@ class Node:
|
|
94
96
|
"""
|
95
97
|
NodeId = get_nodeid_from_name(self.name)
|
96
98
|
if column_name is not None:
|
97
|
-
|
98
|
-
node_dataset = pd.read_sql(
|
99
|
-
text(
|
100
|
-
SELECT_DATASET_BY_COLUMN_QUERY.format(
|
101
|
-
column_name, self.name
|
102
|
-
)
|
103
|
-
),
|
104
|
-
self.engine,
|
105
|
-
)
|
106
|
-
|
99
|
+
query = text(SELECT_DATASET_BY_COLUMN_QUERY.format(column_name, self.name))
|
107
100
|
else:
|
108
|
-
|
109
|
-
|
110
|
-
|
111
|
-
|
101
|
+
query = text(SELECT_DATASET_BY_NODE_ID_QUERY.format(NodeId))
|
102
|
+
|
103
|
+
result_proxy = self.engine.execute(query)
|
104
|
+
node_dataset = pd.DataFrame(result_proxy.fetchall(), columns=result_proxy.keys())
|
105
|
+
|
112
106
|
return node_dataset
|
113
107
|
|
114
108
|
def upload_dataset(self, dataset_name: str, path_to_csv: str = params['path_to_test_csv']):
|
scripts/create_db.py
CHANGED
@@ -18,6 +18,8 @@ def main(csv_file_path):
|
|
18
18
|
config.read(config_file_path)
|
19
19
|
mysql_config = config['mysql']
|
20
20
|
|
21
|
+
print('Im here !')
|
22
|
+
|
21
23
|
mydb = mysql.connector.connect(host=mysql_config['host'], user=mysql_config['user'], password=mysql_config['password'])
|
22
24
|
mycursor = mydb.cursor()
|
23
25
|
|
Medfl-0.1.24.dist-info/RECORD
DELETED
@@ -1,32 +0,0 @@
|
|
1
|
-
Medfl/__init__.py,sha256=wamSaVIS4RoIHcTCLQPKQ5f8odcy87mRCKyRR7-Qpu4,57
|
2
|
-
Medfl/LearningManager/__init__.py,sha256=DZZl9wUCY4vzA8ulmBL4EaFR8yVDYNdvur2mk4BJQnA,358
|
3
|
-
Medfl/LearningManager/client.py,sha256=ik-0qImV6nrk1Iw70dEMKaN_r7NxvcyVl5nAWqjzmQY,6083
|
4
|
-
Medfl/LearningManager/dynamicModal.py,sha256=0mTvDJlss0uSJ3_EXOuL_d-zRmFyXaKB4W4ql-uEX8Y,10821
|
5
|
-
Medfl/LearningManager/federated_dataset.py,sha256=2zAl6lW058pqqTsTDv5ixRiIe5XaNKPPBK8rTva-LPY,2141
|
6
|
-
Medfl/LearningManager/flpipeline.py,sha256=A0CtTtOoh2PfSuwH-bxOOndoflLjfTyWwR-DvydN-RA,7303
|
7
|
-
Medfl/LearningManager/model.py,sha256=DA7HP34Eq1Ra65OlkBmjH9d2MD7OEbsOhfxD48l4QOk,7679
|
8
|
-
Medfl/LearningManager/params.yaml,sha256=5I-NljhnSaqzjkWVNzrOtrB8z7tnHBKiBmY-mKGhBQM,450
|
9
|
-
Medfl/LearningManager/params_optimiser.py,sha256=Pg_I5n_sPz-7ZqOsJGmnVM9ye7c5aPp5szBPmHsWKhE,18060
|
10
|
-
Medfl/LearningManager/plot.py,sha256=iPqMV9rVd7hquoFixDL20OzXI5bMpBW41bkVmTKIWtE,7927
|
11
|
-
Medfl/LearningManager/server.py,sha256=iQYiWFWMh9FdyQfNoAGYZ7l67fY4lB0dwICgnDXPOlA,7205
|
12
|
-
Medfl/LearningManager/strategy.py,sha256=n0asQajkHfGLDX3QbbV5qntQA-xuJZU8Z92XccZENsA,3517
|
13
|
-
Medfl/LearningManager/utils.py,sha256=7iJiA-v7mM4SuvvwxA9oAP8i15MvNpkMyCv6uC6lLoQ,9342
|
14
|
-
Medfl/NetManager/__init__.py,sha256=htCEy8g7lrKKeZJ-cH9-YCTyWfIOLwKtoj_dlNasOuM,246
|
15
|
-
Medfl/NetManager/database_connector.py,sha256=rooasWBSNtZZmqQvLPS0IimHQqWeCMyyGFRFzNM8Dlw,1538
|
16
|
-
Medfl/NetManager/dataset.py,sha256=NpbmfSKJdtqIsShvjsb_z8W1vqlpYoFyZp8Wzsx_aEc,2869
|
17
|
-
Medfl/NetManager/flsetup.py,sha256=IPWdZcz13PZic5OQyCiMyJ34cQPegKwkKEJSAqjjnqg,11754
|
18
|
-
Medfl/NetManager/net_helper.py,sha256=VYJPVI65wo34X9GO9t1joNGPr3TutZdxfva-X6P3MSU,7017
|
19
|
-
Medfl/NetManager/net_manager_queries.py,sha256=2dfhba0iuh40kVoC7am-vC4Hlrvr-zfJ5ESymsI1Kps,4327
|
20
|
-
Medfl/NetManager/network.py,sha256=m6TOnzVCWOJME6fUUZ25ZpQedDeRn4O-tdE5HPVqOvw,5519
|
21
|
-
Medfl/NetManager/node.py,sha256=Mua63zKs865bSu3QKfLJx7pxYdEXpPxDSCMRhDYNhms,6475
|
22
|
-
Medfl-0.1.24.data/scripts/setup_mysql.sh,sha256=PXl271yvYBrXwrZ7P0tsYHnGkOubKvRaFee4MnzsSko,560
|
23
|
-
alembic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
24
|
-
alembic/env.py,sha256=a4zJAzPNLHnIrUlXCqf_8vuAlFu0pceFJJKM1PQaOI4,1649
|
25
|
-
scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
26
|
-
scripts/base.py,sha256=pR7StIt3PpX30aoh53gMkpeNJMHytAPhdc7N09tCITA,781
|
27
|
-
scripts/config.ini,sha256=tDQQlpwZbCFQuSS017yjEiLglLihp6wETbWtNrSWeAA,82
|
28
|
-
scripts/create_db.py,sha256=0bn5bBOl6FOKKKX0FPb6jwcbbWX9ScaOtL_HlpXHOME,4464
|
29
|
-
Medfl-0.1.24.dist-info/METADATA,sha256=KtN26Rxa1kwsDLpVbxYXkt_yoBnlJ1nJmpNjMV6agcg,5580
|
30
|
-
Medfl-0.1.24.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
|
31
|
-
Medfl-0.1.24.dist-info/top_level.txt,sha256=CmLt1TC7PJj-V55rhffMZ9LSOiuSaaEbz9FJm_zOw_E,22
|
32
|
-
Medfl-0.1.24.dist-info/RECORD,,
|
File without changes
|
File without changes
|