M3Drop 0.4.51__py3-none-any.whl → 0.4.52__py3-none-any.whl

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Files changed (6) hide show
  1. m3Drop/NormalizationGPU.py +5 -4
  2. {m3drop-0.4.51.dist-info → m3drop-0.4.52.dist-info}/METADATA +1 -1
  3. {m3drop-0.4.51.dist-info → m3drop-0.4.52.dist-info}/RECORD +6 -6
  4. {m3drop-0.4.51.dist-info → m3drop-0.4.52.dist-info}/WHEEL +0 -0
  5. {m3drop-0.4.51.dist-info → m3drop-0.4.52.dist-info}/licenses/LICENSE +0 -0
  6. {m3drop-0.4.51.dist-info → m3drop-0.4.52.dist-info}/top_level.txt +0 -0
m3Drop/NormalizationGPU.py CHANGED
@@ -187,10 +187,11 @@ def NBumiPearsonResidualsCombinedGPU(
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  n_samples_chunk = int(chunk_total_items * sampling_rate)
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  if n_samples_chunk > 0:
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- # Index Sampling: Zero VRAM overhead compared to Masking
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- # Use flatten indices
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- # [FIXED LINE BELOW] Added int() cast for safety
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- sample_indices = cupy.random.choice(int(chunk_total_items), size=n_samples_chunk, replace=False)
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+ # [CRITICAL FIX] Use randint (with replacement) instead of choice(replace=False).
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+ # 'choice' with replace=False tries to allocate a permutation of the ENTIRE chunk (3GB+).
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+ # 'randint' only allocates the indices we need (KB).
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+ # Given the huge population (300M+) and small sample (100k+), collisions are statistically negligible.
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+ sample_indices = cupy.random.randint(0, int(chunk_total_items), size=n_samples_chunk)
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  else:
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  sample_indices = None
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{m3drop-0.4.51.dist-info → m3drop-0.4.52.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: M3Drop
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- Version: 0.4.51
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+ Version: 0.4.52
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  Summary: A Python implementation of the M3Drop single-cell RNA-seq analysis tool.
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  Home-page: https://github.com/PragalvhaSharma/m3DropNew
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  Author: Tallulah Andrews
{m3drop-0.4.51.dist-info → m3drop-0.4.52.dist-info}/RECORD RENAMED
@@ -5,10 +5,10 @@ m3Drop/CoreGPU.py,sha256=6LToLuWyHxX_7sC2z0Xnvy_qqgmpew5DmnCV0PxmTZQ,19785
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  m3Drop/DiagnosticsCPU.py,sha256=l0Imkh3F3zo4ovihUjx7cYWYgzPdztWCN1hcBFO43nY,12943
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  m3Drop/DiagnosticsGPU.py,sha256=bsatHyHszgbufneeJvFvHBTLzDuY006nP2yHPHs8s7M,14389
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  m3Drop/NormalizationCPU.py,sha256=DmqvjcpHwkNZicEb2GBqTDBVyvtBeUSLmFRwRFDk0ms,7458
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- m3Drop/NormalizationGPU.py,sha256=JmXyRWaN64IrSJscuowmnQEjCjuxbk6gwFIs6wgO-Ps,14835
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+ m3Drop/NormalizationGPU.py,sha256=IZCRM121C3U_nkKr3Hc5nppGCdXiC3DNvP4Lyc5wvJo,15045
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  m3Drop/__init__.py,sha256=W_TQ9P8_7Tdsa6kDZ6IJKT0FMkX_JFvBqiP821CZIrk,2180
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- m3drop-0.4.51.dist-info/licenses/LICENSE,sha256=44Iqpp8Fc10Xzd5T7cT9UhO31Qftk3gBiCjtpwilP_k,1074
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- m3drop-0.4.51.dist-info/METADATA,sha256=YnC3WlbNfbpNbajZqd4ENA6sbrTr5bCIgZ7o1Y7cXOA,5248
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- m3drop-0.4.51.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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- m3drop-0.4.51.dist-info/top_level.txt,sha256=AEULFEFIgFtAwS-KBlIFoYXrqczX_rwqrEcdK46GIrA,7
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- m3drop-0.4.51.dist-info/RECORD,,
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+ m3drop-0.4.52.dist-info/licenses/LICENSE,sha256=44Iqpp8Fc10Xzd5T7cT9UhO31Qftk3gBiCjtpwilP_k,1074
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+ m3drop-0.4.52.dist-info/METADATA,sha256=FU8q5R_RoPad3FAKz9cGHBqgeIa6WC39oOUU5_h_6Us,5248
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+ m3drop-0.4.52.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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+ m3drop-0.4.52.dist-info/top_level.txt,sha256=AEULFEFIgFtAwS-KBlIFoYXrqczX_rwqrEcdK46GIrA,7
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+ m3drop-0.4.52.dist-info/RECORD,,