M3Drop 0.4.48__py3-none-any.whl → 0.4.49__py3-none-any.whl

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Files changed (7) hide show
  1. m3Drop/NormalizationCPU.py +9 -1
  2. m3Drop/NormalizationGPU.py +10 -1
  3. {m3drop-0.4.48.dist-info → m3drop-0.4.49.dist-info}/METADATA +1 -1
  4. {m3drop-0.4.48.dist-info → m3drop-0.4.49.dist-info}/RECORD +7 -7
  5. {m3drop-0.4.48.dist-info → m3drop-0.4.49.dist-info}/WHEEL +0 -0
  6. {m3drop-0.4.48.dist-info → m3drop-0.4.49.dist-info}/licenses/LICENSE +0 -0
  7. {m3drop-0.4.48.dist-info → m3drop-0.4.49.dist-info}/top_level.txt +0 -0
m3Drop/NormalizationCPU.py CHANGED
@@ -122,9 +122,17 @@ def NBumiPearsonResidualsCombinedCPU(
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  adata_out_approx = anndata.AnnData(obs=adata_in.obs, var=filtered_var)
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  adata_out_approx.write_h5ad(output_filename_approx, compression=None)
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+ # --- CHUNK SIZE FIX ---
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  # Calculate appropriate H5 storage chunks
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  storage_chunk_rows = int(1_000_000_000 / (ng_filtered * 8))
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- if storage_chunk_rows < 1: storage_chunk_rows = 1
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+
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+ # [CRITICAL FIX] Clamp chunk size to total rows (nc)
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+ if storage_chunk_rows > nc:
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+ storage_chunk_rows = nc
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+
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+ if storage_chunk_rows < 1:
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+ storage_chunk_rows = 1
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+ # ----------------------
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  # Open both files for writing simultaneously
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  with h5py.File(output_filename_full, 'a') as f_full, h5py.File(output_filename_approx, 'a') as f_approx:
m3Drop/NormalizationGPU.py CHANGED
@@ -101,8 +101,17 @@ def NBumiPearsonResidualsCombinedGPU(
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  adata_out_approx = anndata.AnnData(obs=adata_in.obs, var=filtered_var)
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  adata_out_approx.write_h5ad(output_filename_approx, compression=None)
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+ # --- CHUNK SIZE FIX ---
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+ # Calculate rows needed to fill ~1GB
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  storage_chunk_rows = int(1_000_000_000 / (ng_filtered * 8))
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- if storage_chunk_rows < 1: storage_chunk_rows = 1
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+
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+ # [CRITICAL FIX] Clamp chunk size to total rows (nc)
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+ if storage_chunk_rows > nc:
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+ storage_chunk_rows = nc
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+
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+ if storage_chunk_rows < 1:
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+ storage_chunk_rows = 1
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+ # ----------------------
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  # Open both files for writing simultaneously
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  with h5py.File(output_filename_full, 'a') as f_full, h5py.File(output_filename_approx, 'a') as f_approx:
{m3drop-0.4.48.dist-info → m3drop-0.4.49.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: M3Drop
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- Version: 0.4.48
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+ Version: 0.4.49
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  Summary: A Python implementation of the M3Drop single-cell RNA-seq analysis tool.
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  Home-page: https://github.com/PragalvhaSharma/m3DropNew
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  Author: Tallulah Andrews
{m3drop-0.4.48.dist-info → m3drop-0.4.49.dist-info}/RECORD RENAMED
@@ -4,11 +4,11 @@ m3Drop/CoreCPU.py,sha256=csRg5TLQx1Sup7k3lDJm9OO5Oe5-1aC3u_6ldE_GIX8,18679
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  m3Drop/CoreGPU.py,sha256=6LToLuWyHxX_7sC2z0Xnvy_qqgmpew5DmnCV0PxmTZQ,19785
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  m3Drop/DiagnosticsCPU.py,sha256=l0Imkh3F3zo4ovihUjx7cYWYgzPdztWCN1hcBFO43nY,12943
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  m3Drop/DiagnosticsGPU.py,sha256=bsatHyHszgbufneeJvFvHBTLzDuY006nP2yHPHs8s7M,14389
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- m3Drop/NormalizationCPU.py,sha256=Mm8VzWDu-NONbp-ngAt4PLjCKAGc7gJZKf-Yd-U95r0,7255
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- m3Drop/NormalizationGPU.py,sha256=1XRDZhNVkIbQMv_ggNoNEnIxRMY1NHDjOtOq4QGVRwY,7011
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+ m3Drop/NormalizationCPU.py,sha256=DmqvjcpHwkNZicEb2GBqTDBVyvtBeUSLmFRwRFDk0ms,7458
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+ m3Drop/NormalizationGPU.py,sha256=Kl5QvR4HCSgooUOf97-nu53J6wf3apdNvc3BFlTFiEM,7264
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  m3Drop/__init__.py,sha256=W_TQ9P8_7Tdsa6kDZ6IJKT0FMkX_JFvBqiP821CZIrk,2180
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- m3drop-0.4.48.dist-info/licenses/LICENSE,sha256=44Iqpp8Fc10Xzd5T7cT9UhO31Qftk3gBiCjtpwilP_k,1074
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- m3drop-0.4.48.dist-info/METADATA,sha256=Q3r9QYqBYVTaBqeK_DUs0-Ygt1zkSz4gGY5G5d2XY8M,5248
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- m3drop-0.4.48.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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- m3drop-0.4.48.dist-info/top_level.txt,sha256=AEULFEFIgFtAwS-KBlIFoYXrqczX_rwqrEcdK46GIrA,7
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- m3drop-0.4.48.dist-info/RECORD,,
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+ m3drop-0.4.49.dist-info/licenses/LICENSE,sha256=44Iqpp8Fc10Xzd5T7cT9UhO31Qftk3gBiCjtpwilP_k,1074
11
+ m3drop-0.4.49.dist-info/METADATA,sha256=aUj_G6pHzrSKr70GwbOptvcAP7HCGviG8hYjq6OiqMk,5248
12
+ m3drop-0.4.49.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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+ m3drop-0.4.49.dist-info/top_level.txt,sha256=AEULFEFIgFtAwS-KBlIFoYXrqczX_rwqrEcdK46GIrA,7
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+ m3drop-0.4.49.dist-info/RECORD,,