LoopStructural 1.6.1__py3-none-any.whl → 1.6.6__py3-none-any.whl

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Files changed (69) hide show
  1. LoopStructural/datatypes/_bounding_box.py +77 -7
  2. LoopStructural/datatypes/_point.py +67 -7
  3. LoopStructural/datatypes/_structured_grid.py +17 -0
  4. LoopStructural/datatypes/_surface.py +17 -0
  5. LoopStructural/export/omf_wrapper.py +49 -21
  6. LoopStructural/interpolators/__init__.py +13 -0
  7. LoopStructural/interpolators/_api.py +81 -13
  8. LoopStructural/interpolators/_builders.py +141 -141
  9. LoopStructural/interpolators/_discrete_fold_interpolator.py +11 -4
  10. LoopStructural/interpolators/_discrete_interpolator.py +100 -53
  11. LoopStructural/interpolators/_finite_difference_interpolator.py +78 -88
  12. LoopStructural/interpolators/_geological_interpolator.py +27 -10
  13. LoopStructural/interpolators/_interpolator_builder.py +55 -0
  14. LoopStructural/interpolators/_interpolator_factory.py +7 -18
  15. LoopStructural/interpolators/_p1interpolator.py +3 -3
  16. LoopStructural/interpolators/_surfe_wrapper.py +42 -12
  17. LoopStructural/interpolators/supports/_2d_base_unstructured.py +16 -0
  18. LoopStructural/interpolators/supports/_2d_structured_grid.py +44 -9
  19. LoopStructural/interpolators/supports/_3d_base_structured.py +28 -7
  20. LoopStructural/interpolators/supports/_3d_structured_grid.py +38 -12
  21. LoopStructural/interpolators/supports/_3d_structured_tetra.py +7 -3
  22. LoopStructural/interpolators/supports/_3d_unstructured_tetra.py +8 -2
  23. LoopStructural/interpolators/supports/__init__.py +7 -0
  24. LoopStructural/interpolators/supports/_base_support.py +7 -0
  25. LoopStructural/modelling/__init__.py +1 -3
  26. LoopStructural/modelling/core/geological_model.py +11 -12
  27. LoopStructural/modelling/features/__init__.py +1 -0
  28. LoopStructural/modelling/features/_analytical_feature.py +48 -18
  29. LoopStructural/modelling/features/_base_geological_feature.py +37 -8
  30. LoopStructural/modelling/features/_cross_product_geological_feature.py +7 -0
  31. LoopStructural/modelling/features/_geological_feature.py +50 -12
  32. LoopStructural/modelling/features/_projected_vector_feature.py +112 -0
  33. LoopStructural/modelling/features/_structural_frame.py +16 -18
  34. LoopStructural/modelling/features/_unconformity_feature.py +3 -3
  35. LoopStructural/modelling/features/builders/_base_builder.py +8 -0
  36. LoopStructural/modelling/features/builders/_folded_feature_builder.py +47 -16
  37. LoopStructural/modelling/features/builders/_geological_feature_builder.py +29 -13
  38. LoopStructural/modelling/features/builders/_structural_frame_builder.py +7 -2
  39. LoopStructural/modelling/features/fault/__init__.py +1 -1
  40. LoopStructural/modelling/features/fault/_fault_function.py +19 -1
  41. LoopStructural/modelling/features/fault/_fault_function_feature.py +3 -0
  42. LoopStructural/modelling/features/fault/_fault_segment.py +50 -53
  43. LoopStructural/modelling/features/fold/__init__.py +1 -2
  44. LoopStructural/modelling/features/fold/_fold_rotation_angle_feature.py +0 -23
  45. LoopStructural/modelling/features/fold/_foldframe.py +4 -4
  46. LoopStructural/modelling/features/fold/_svariogram.py +81 -46
  47. LoopStructural/modelling/features/fold/fold_function/__init__.py +27 -0
  48. LoopStructural/modelling/features/fold/fold_function/_base_fold_rotation_angle.py +253 -0
  49. LoopStructural/modelling/features/fold/fold_function/_fourier_series_fold_rotation_angle.py +153 -0
  50. LoopStructural/modelling/features/fold/fold_function/_lambda_fold_rotation_angle.py +46 -0
  51. LoopStructural/modelling/features/fold/fold_function/_trigo_fold_rotation_angle.py +151 -0
  52. LoopStructural/modelling/input/process_data.py +47 -26
  53. LoopStructural/modelling/input/project_file.py +49 -23
  54. LoopStructural/modelling/intrusions/intrusion_feature.py +3 -0
  55. LoopStructural/utils/__init__.py +1 -0
  56. LoopStructural/utils/_surface.py +18 -6
  57. LoopStructural/utils/_transformation.py +98 -14
  58. LoopStructural/utils/colours.py +50 -0
  59. LoopStructural/utils/features.py +5 -0
  60. LoopStructural/utils/maths.py +53 -1
  61. LoopStructural/version.py +1 -1
  62. LoopStructural-1.6.6.dist-info/METADATA +160 -0
  63. {LoopStructural-1.6.1.dist-info → LoopStructural-1.6.6.dist-info}/RECORD +66 -59
  64. {LoopStructural-1.6.1.dist-info → LoopStructural-1.6.6.dist-info}/WHEEL +1 -1
  65. LoopStructural/interpolators/_non_linear_discrete_interpolator.py +0 -0
  66. LoopStructural/modelling/features/fold/_fold_rotation_angle.py +0 -149
  67. LoopStructural-1.6.1.dist-info/METADATA +0 -81
  68. {LoopStructural-1.6.1.dist-info → LoopStructural-1.6.6.dist-info}/LICENSE +0 -0
  69. {LoopStructural-1.6.1.dist-info → LoopStructural-1.6.6.dist-info}/top_level.txt +0 -0
LoopStructural-1.6.6.dist-info/METADATA ADDED
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+ Metadata-Version: 2.2
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+ Name: LoopStructural
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+ Version: 1.6.6
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+ Summary: 3D geological modelling
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+ Author-email: Lachlan Grose <lachlan.grose@monash.edu>
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+ License: MIT
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+ Project-URL: Documentation, https://Loop3d.org/LoopStructural/
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+ Project-URL: Bug Tracker, https://github.com/loop3d/loopstructural/issues
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+ Project-URL: Source Code, https://github.com/loop3d/loopstructural
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+ Keywords: earth sciences,geology,3-D modelling,structural geology,uncertainty
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+ Classifier: Development Status :: 5 - Production/Stable
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Topic :: Scientific/Engineering :: Information Analysis
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Operating System :: Microsoft :: Windows
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+ Classifier: Operating System :: POSIX
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+ Classifier: Operating System :: MacOS
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+ Classifier: Programming Language :: Python :: 3.8
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Requires-Python: >=3.8
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: numpy>=1.18
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+ Requires-Dist: pandas
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+ Requires-Dist: scipy
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+ Requires-Dist: scikit-image
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+ Requires-Dist: scikit-learn
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+ Requires-Dist: tqdm
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+ Provides-Extra: all
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+ Requires-Dist: loopstructural[export,inequalities,visualisation]; extra == "all"
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+ Provides-Extra: visualisation
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+ Requires-Dist: matplotlib; extra == "visualisation"
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+ Requires-Dist: pyvista; extra == "visualisation"
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+ Requires-Dist: loopstructuralviusualisation>0.1.4; extra == "visualisation"
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+ Provides-Extra: export
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+ Requires-Dist: geoh5py; extra == "export"
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+ Requires-Dist: pyevtk; extra == "export"
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+ Requires-Dist: dill; extra == "export"
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+ Provides-Extra: jupyter
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+ Requires-Dist: pyvista[all]; extra == "jupyter"
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+ Requires-Dist: tqdm; extra == "jupyter"
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+ Provides-Extra: inequalities
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+ Requires-Dist: loopsolver; extra == "inequalities"
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+ Provides-Extra: docs
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+ Requires-Dist: pyvista[all]; extra == "docs"
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+ Requires-Dist: pydata-sphinx-theme; extra == "docs"
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+ Requires-Dist: meshio; extra == "docs"
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+ Requires-Dist: loopstructuralvisualisation[all]; extra == "docs"
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+ Requires-Dist: networkx; extra == "docs"
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+ Requires-Dist: scikit-learn; extra == "docs"
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+ Requires-Dist: scikit-image; extra == "docs"
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+ Requires-Dist: sphinx; extra == "docs"
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+ Requires-Dist: sphinx-gallery; extra == "docs"
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+ Requires-Dist: geoh5py; extra == "docs"
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+ Requires-Dist: geopandas; extra == "docs"
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+ Requires-Dist: sphinxcontrib-bibtex; extra == "docs"
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+ Requires-Dist: myst-parser; extra == "docs"
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+
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+ # LoopStructural: Loop3D Implicit Geological Modelling
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+
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+ ![3D model of Hamersley created using loopstructural](docs/source/images/image823.png)
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+ [![PyPI version](https://badge.fury.io/py/LoopStructural.svg)](https://badge.fury.io/py/LoopStructural)
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+ [![GitHub license](https://img.shields.io/github/license/Naereen/StrapDown.js.svg)](https://github.com/Loop3D/LoopStructural/blob/master/LICENSE)
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+ [![Documentation loop3d.github.io/LoopStructural/](https://img.shields.io/badge/docs-githubio-brightgreen)](https://loop3d.github.io/LoopStructural)
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+
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+ ## Overview
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+
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+ LoopStructural is an opensource Python library for 3D geological modelling. The library has been built in the scope of the Loop project ([Loop3d.org](https://loop3d.org/)). LoopStructural can:
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+
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+ - Model fault networks integrating fault kinematics and overprinting relationships
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+ - Model folds using structural elements (fold axis, fold axial surface) for multiple fold events
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+ - Use different implicit interpolation algorithms (Finite Difference, Piecewiese Linear, RBF)
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+ - Export models to vtk, geoh5, omf, gocad, csv, obj formats
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+ - Visualise models in an interactive python environment.
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+
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+ ## Installation
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+
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+ ### Google colab
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+
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+ LoopStructural can be used inside a google colab notebook, however interactive visualisation using kitware trame does not work. Only static plots can be displayed.
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+
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+ ### Pip
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+
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+ `pip install loopstructural`
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+
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+ Optional dependencies are:
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+
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+ - loopstructuralvisualisation (wrapper for pyvista to interface with loopstructural objects)
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+ - pyvista (3D visualisation)
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+ - geoh5py (export to .geoh5 format)
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+ - mira-omf (export to .omf format to load in Leapfrog)
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+ - pyevtk
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+ - dill (serialize loop models to a pickle file)
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+ - tqdm (progress bars)
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+ - loopsolver (experimental solver for admm inequality constraints)
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+
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+ You can install all of the optional dependencies using:
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+ `pip install loopstructural[all]`
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+
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+ ### conda
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+
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+ `conda install -c conda-forge -c loop3d loopstructural`
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+
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+ to install the working 3D visualisation environment
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+ `conda install -c conda-forge -c loop3d loopstructural loopstructuralvisualisation pyvista trame trame-vtk trame-vuetify`
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+
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+ ## Quickstart
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+
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+ - A basic geological model
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+
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+ ```Python
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+ from LoopStructural import GeologicalModel
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+ from LoopStructural.datatypes import BoundingBox
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+ from LoopStructural.visualisation import Loop3DView
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+ from LoopStructural.datasets import load_claudius
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+
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+ import numpy as np
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+ data, bb = load_claudius()
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+
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+ #bb constaints origin and maximum of axis aligned bounding box
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+ #data is a pandas dataframe with X,Y,Z,val,nx,ny,nz, feature_name
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+
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+ model = GeologicalModel(bb[0,:],bb[1,:])
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+ model.data = data
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+ # nelements specifies the number of discrete interpolation elements
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+ # 'stratí' is the feature name in the data dataframe
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+ model.create_and_add_foliation('strati',nelements=1e5)
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+ model.update()
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+ # get the value of the interpolator at some random locations
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+ locations = np.array(
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+ [
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+ np.random.uniform(bb[0, 0], bb[1, 0],5),
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+ np.random.uniform(bb[0, 1], bb[1, 1],5),
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+ np.random.uniform(bb[0, 2], bb[1, 2],5),
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+ ]
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+ ).T
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+ val = model.evaluate_feature_value('strati', locations)
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+ # get the gradient of the interpolator
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+ gradient = model.evaluate_feature_gradient('strati',locations)
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+
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+ #Plot the scalar field of the model
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+ model['strati'].scalar_field().plot()
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+
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+
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+ ```
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+
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+ ## Documentation
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+
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+ The LoopStructural documentation can be found [here](https://loop3d.github.io/LoopStructural)
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+
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+ ## Problems
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+
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+ Any bugs/feature requests/comments please create a new [issue](https://github.com/Loop3D/LoopStructural/issues).
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+
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+ ## Acknowledgements
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+
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+ _The Loop platform is an open source 3D probabilistic geological and geophysical modelling platform, initiated by Geoscience Australia and the OneGeology consortium. The project is funded by Australian territory, State and Federal Geological Surveys, the Australian Research Council and the MinEx Collaborative Research Centre._
{LoopStructural-1.6.1.dist-info → LoopStructural-1.6.6.dist-info}/RECORD RENAMED
@@ -1,5 +1,5 @@
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  LoopStructural/__init__.py,sha256=nlJ0csTZ_xlTZrWvTKiTp3ER_XRQN6iqQ5sR94RD5QA,1331
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- LoopStructural/version.py,sha256=UB0rz0TMsR0fTvEwewaJTcQXyTNQSEi2_Jkyoms_bss,22
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+ LoopStructural/version.py,sha256=jZXedhX8KUpTuFqDH2e8mjgp06okeyO4Id8VnCVtFpQ,22
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  LoopStructural/datasets/__init__.py,sha256=ylb7fzJU_DyQ73LlwQos7VamqkDSGITbbnoKg7KAOmE,677
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  LoopStructural/datasets/_base.py,sha256=FB_D5ybBYHoaNbycdkpZcRffzjrrL1xp9X0k-pyob9Y,7618
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  LoopStructural/datasets/_example_models.py,sha256=Zg33IeUyh4C-lC0DRMLqCDP2IrX8L-gNV1WxJwBGjzM,113
@@ -29,101 +29,108 @@ LoopStructural/datasets/data/geological_map_data/stratigraphic_order.csv,sha256=
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  LoopStructural/datasets/data/geological_map_data/stratigraphic_orientations.csv,sha256=RysyqUAIjY6iIDUfTh11n9QUQWXB_qxKnZeN_DqNzlY,26745
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  LoopStructural/datasets/data/geological_map_data/stratigraphic_thickness.csv,sha256=pnSmG-wL8-kxuoHo_pgpJrfTmsZOzc8L0vxpBRh3r8A,355
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  LoopStructural/datatypes/__init__.py,sha256=lVg64DnynMm58qvYTjLrcyWH7vk2ngr9JGMo5FaiALI,160
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- LoopStructural/datatypes/_bounding_box.py,sha256=kK2hbI9NCBcR9K6S7FNZs9cbaUPVcT41Okg_MZqObcA,14101
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- LoopStructural/datatypes/_point.py,sha256=DH-s8GJeomOwRmalqooNqeV5AOaEHOxVeW7a8yrb14A,5251
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- LoopStructural/datatypes/_structured_grid.py,sha256=OFE7dog3TSBSUDGbSEV7ZPUekG0ToNAkFROw8pcm014,3184
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- LoopStructural/datatypes/_surface.py,sha256=J40crDWkbGAbaDNYP0J8koO_eWdZucmbXRsGxLPVHDU,5964
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+ LoopStructural/datatypes/_bounding_box.py,sha256=5Gx8CGH--VjYVCBOyaill-f3bevYul2NwVtmgvj9a2A,16151
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+ LoopStructural/datatypes/_point.py,sha256=iBajMDEod0zU85WjmHGnXf1MmB73DvDWm2fg_jK8IBA,7183
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+ LoopStructural/datatypes/_structured_grid.py,sha256=AwSzkoAySU8ZHGbbGTyUoU3fCXuBVQAOD_6th6v0J1o,3665
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+ LoopStructural/datatypes/_surface.py,sha256=3RLA6-zkWE1L3IvXdrq92Dd5asnI9Lf6ebcNmrMnn98,6445
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  LoopStructural/export/exporters.py,sha256=BniZu-PqQvHqCU6GIuJQ5FPzI9Dx_T6rI8EW1pykois,17209
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  LoopStructural/export/file_formats.py,sha256=0xKyYSW4Jv_4jsXwusg-WO6PNUhZKd6HdWSqGSaPve8,232
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  LoopStructural/export/geoh5.py,sha256=TByfnHul1Rg4oB5KPnD-yCcZ-uNr4cxuYnRB_6mclnA,4253
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  LoopStructural/export/gocad.py,sha256=cQ6v7ZD0CVubt3c2f9EwAYrziu5bEFSWBtx0uade5mg,3370
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- LoopStructural/export/omf_wrapper.py,sha256=faswHT4k1ZMaJLdZIyxGJp-IlXBdwGREnlcOSooJh3o,2375
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- LoopStructural/interpolators/__init__.py,sha256=pBxqCCIJ3WS8W179EnFK9QVmIzgzqqt0T3ehu5absWA,2944
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- LoopStructural/interpolators/_api.py,sha256=m1o5oza7kOXDPgasDqKY1AQE-Tz0pCzuTJXtqgA5S88,4858
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- LoopStructural/interpolators/_builders.py,sha256=6M8__gGDO-dyu3LPIwcPia1knLR5-EH0GBMLSF0Kuwc,6476
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- LoopStructural/interpolators/_discrete_fold_interpolator.py,sha256=4yfXIKiFTllomWF0nSLDtOk0S6MflkG7uZbvVcGW6KE,6247
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- LoopStructural/interpolators/_discrete_interpolator.py,sha256=NOIlIosMPozSS63coGM1zwJTioezLuDzbZZ5sbX8Dzk,23671
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- LoopStructural/interpolators/_finite_difference_interpolator.py,sha256=kwu5L9kTEelB0ibiKTZBtWSZxClJTP9PRMmmlfODbO8,16505
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- LoopStructural/interpolators/_geological_interpolator.py,sha256=FGyc8AcuTh70kedbMK4QO9KMTdaA81bELh587n8bJHQ,10408
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- LoopStructural/interpolators/_interpolator_factory.py,sha256=LSxrf7tEWek_0tNxioGHeWWwu3Ywf8Ar79M6gC75tBY,3468
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- LoopStructural/interpolators/_non_linear_discrete_interpolator.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ LoopStructural/export/omf_wrapper.py,sha256=4vcF4WOQIVEYsWrfATgKCDh8nUybLTbrlXnCxZ_3fkU,3392
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+ LoopStructural/interpolators/__init__.py,sha256=h-m1FkkRFGCnXWJSWwFKrfgCDtmboAPvJrpXCL58Huc,3450
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+ LoopStructural/interpolators/_api.py,sha256=EC4ogG2uPq-z_pgNGd_eTieTl92eaZ-rjyoFwXiHL_s,7839
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+ LoopStructural/interpolators/_builders.py,sha256=B49KsxB8RRN6IHDfGT43nXWe_Av1SVVT8vm2Nh1oEiQ,6758
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+ LoopStructural/interpolators/_discrete_fold_interpolator.py,sha256=eDe0R1lcQ0AuMcv7zlpu5c-soCv7AybIqQAuN2vFE3M,6542
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+ LoopStructural/interpolators/_discrete_interpolator.py,sha256=EPiEWtx8RuE75xp7umy7Py4vTiFB0xgN3EFnl44ygKM,25577
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+ LoopStructural/interpolators/_finite_difference_interpolator.py,sha256=csjHpcDNKufFt4LUOR-ZsBEmQ4YLkFt0qd9KUqXI_T4,15950
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+ LoopStructural/interpolators/_geological_interpolator.py,sha256=4qPkJKWW1Kqe-U78CLR8ayLdFXq9aJZ2FB5_ntITxHk,11028
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+ LoopStructural/interpolators/_interpolator_builder.py,sha256=M-nX7qzigW0QYNqSQQkxXAdwKW9BQrL-qSdSUAWtTCc,1917
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+ LoopStructural/interpolators/_interpolator_factory.py,sha256=WcAbLtxLs4T5tt9ysZb-lorwgVi8utNunHsRCJrJd2k,2864
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  LoopStructural/interpolators/_operator.py,sha256=PZOUzq9OMaJdG151dSLIo7AxRuhTj6-zEAzFZo-EOJU,1114
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- LoopStructural/interpolators/_p1interpolator.py,sha256=et-8sRX442XVNZK14XHx7GYtkCaW7OSkawn9zzftg3g,8753
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+ LoopStructural/interpolators/_p1interpolator.py,sha256=4rjj4iaw2c8hOfBS9u8ycxzijYdmvpeijvhYRwUwZg0,8736
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  LoopStructural/interpolators/_p2interpolator.py,sha256=UT-As5RNsmOwHOzO_6FiRcAwlNHfi4ILbJw2LGpwKAw,10274
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- LoopStructural/interpolators/_surfe_wrapper.py,sha256=OOf8KevdBGRnrYtkw3EPTWR9Iy43gpH4Vj4UrbEiJmA,5909
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+ LoopStructural/interpolators/_surfe_wrapper.py,sha256=uwqABnixan9bcyU08hbxO9ATO4DawItuGSGj7iAKa9U,6772
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  LoopStructural/interpolators/_cython/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- LoopStructural/interpolators/supports/_2d_base_unstructured.py,sha256=IPDdXGn8QVPugqVGbepj2rKQjbQinjZtduus240wvb0,11197
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+ LoopStructural/interpolators/supports/_2d_base_unstructured.py,sha256=maHzpHnPRoo5IOLcp4Si7kj0oaxFox8XYrknwErbyoo,11796
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  LoopStructural/interpolators/supports/_2d_p1_unstructured.py,sha256=okcy56nyjuedmknQn_95V2tm0kdMA-oJcD3U2jU8u0w,2637
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  LoopStructural/interpolators/supports/_2d_p2_unstructured.py,sha256=TeBVtT1PMV7CKzmnFZke37acMoFxouer20cskS7pVoE,10422
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- LoopStructural/interpolators/supports/_2d_structured_grid.py,sha256=8jG0ASTHtCiEohvsc8TzwBVwJ0iyJJID4SVJQwgk2nk,14978
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+ LoopStructural/interpolators/supports/_2d_structured_grid.py,sha256=TbAV1iw2gmZ4ovSMj04GLKaDZjbxK7YAceJ4wBYn8m8,16209
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  LoopStructural/interpolators/supports/_2d_structured_tetra.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- LoopStructural/interpolators/supports/_3d_base_structured.py,sha256=IDORlhwyCYP3paBEd1Dtwc7u6Oszs6CxcaNgHRH6wCI,14539
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+ LoopStructural/interpolators/supports/_3d_base_structured.py,sha256=x3IuXXryyRR_R91e4BbAN0BsbgMTR8fldfQgQR3lRmA,15712
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  LoopStructural/interpolators/supports/_3d_p2_tetra.py,sha256=CqGVJRUMxbPQZDhhopNt_s9gVhMqh4YbjQyDZonoyxc,11574
62
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63
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64
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65
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62
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64
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65
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66
66
  LoopStructural/interpolators/supports/_aabb.py,sha256=Z-kH_u6c6izak0aHG3Uo14PEKQeZmYlevLDC32Q06xk,3208
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67
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68
68
  LoopStructural/interpolators/supports/_face_table.py,sha256=Hyj4Io63NkPRN8ab9uDHyec-2Kb8BLY_xBF6STNlvBw,3095
69
69
  LoopStructural/interpolators/supports/_support_factory.py,sha256=c86NnM4azWhS2ajPApePap0sFI82mZC8siVAU1fCOn4,1175
70
- LoopStructural/modelling/__init__.py,sha256=pPJSZMlyE_xliv0c1C4M5QlqYuBOUTRLQQtmXKQ1xpU,754
70
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71
71
  LoopStructural/modelling/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
72
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73
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76
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77
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72
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73
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74
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76
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77
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78
78
  LoopStructural/modelling/features/_lambda_geological_feature.py,sha256=pEfLN9HcYGluxRB7LJpcKdYqXP_Mkyo1pLZ3kZZ4mvA,2599
79
+ LoopStructural/modelling/features/_projected_vector_feature.py,sha256=5y1rMq3ZGG4ObSIQBcqFW_E0mfiKlFPoEdWjjnhrpwk,3017
79
80
  LoopStructural/modelling/features/_region.py,sha256=TB4qnoTDQM2VgRjgyODN839fKe3kuRYLllJj0xnDKXo,478
80
- LoopStructural/modelling/features/_structural_frame.py,sha256=I6W-YkQiRADX7xcKMFzDefYGDlXWVAp5nAVRFVcqNow,5062
81
- LoopStructural/modelling/features/_unconformity_feature.py,sha256=-0shSjYdT8IuNDNDYnqJ2niFjFFiBt-Izc-oMBYa0MQ,2405
81
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82
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82
83
  LoopStructural/modelling/features/builders/__init__.py,sha256=Gqld1C-PcaXfJ8vpkWMDCmehmd3hZNYQk1knPtl59Bk,266
83
- LoopStructural/modelling/features/builders/_base_builder.py,sha256=cafVl-KImwSZmHxTuzlpnkh1lW9ARJXJLE0NQ4T_ook,3221
84
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84
85
  LoopStructural/modelling/features/builders/_fault_builder.py,sha256=EyDLyovrnxqSk11zWFnViok7lXMt_E-pG2QqgRgvOLk,25653
85
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86
- LoopStructural/modelling/features/builders/_geological_feature_builder.py,sha256=uBPcwW87SQVH7nYQIZCXFqCpWrKhI1QJ70WC0rTTdlk,20960
87
- LoopStructural/modelling/features/builders/_structural_frame_builder.py,sha256=jVIV1wUo1MxcpFx6RxBtl8IgXJt2USq7XX1m-NAcMNU,7635
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91
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92
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86
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87
+ LoopStructural/modelling/features/builders/_geological_feature_builder.py,sha256=Js3NgfbFipZrTmKrIMKsNpRE5EeBxy0_TmGz3ytO5YA,21628
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92
+ LoopStructural/modelling/features/fault/_fault_segment.py,sha256=mxT7305WNuBDtxBErlZ1RCinoQyoxfs5P5PI3_mKLLc,17882
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93
94
  LoopStructural/modelling/features/fold/_fold.py,sha256=bPnnLUSiF4uoMRg8aHoOSTPRgaM0JyLoRQPu5_A-J3w,5448
94
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96
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99
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100
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101
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102
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103
  LoopStructural/modelling/input/__init__.py,sha256=HhJM3V5b-8_64LiRbF3Bd1pjWhJlcknxMSMPRrqZ0-I,153
99
104
  LoopStructural/modelling/input/fault_network.py,sha256=0uxl7lOySdhMhNXoiOkuiHIXqAz1Ls0j-W65cmdQoP8,2348
100
105
  LoopStructural/modelling/input/map2loop_processor.py,sha256=T7Fgqd7FNJWylLKvfIniRZBMRMeAoP8iU330-WYU8Fg,7031
101
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102
- LoopStructural/modelling/input/project_file.py,sha256=mnK6Ts2z_XquYO_JviM-cXTH8T3YA_ZpqrC2qyLaU8M,3305
106
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107
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103
108
  LoopStructural/modelling/intrusions/__init__.py,sha256=EpZK3cHJwGQhPUYIwKCKu8vkNdt_nOgWF0zfhiqDYDA,712
104
109
  LoopStructural/modelling/intrusions/geom_conceptual_models.py,sha256=jwTlhYySUj7z4DEnJoi4AINZB_N3-SW6ONRFL66OsW0,3665
105
110
  LoopStructural/modelling/intrusions/geometric_scaling_functions.py,sha256=PK3qf0TiK-WYIBGG7fYhTD1hwlUN0s75BK8d53SLYuQ,3209
106
111
  LoopStructural/modelling/intrusions/intrusion_builder.py,sha256=1cJjPyRUf3ZDkpwgGJ7TvY-kpqFgG9pXD8yrGfhqwYg,26381
107
- LoopStructural/modelling/intrusions/intrusion_feature.py,sha256=5DFQ1uccX7Rp3PMc_pidw-HixDtKyiRhfLkIUye_Gcc,15455
112
+ LoopStructural/modelling/intrusions/intrusion_feature.py,sha256=ESjtikHFJQzUnowbYiY7UZ_kYdV2QHobQoRJ2far9Vc,15489
108
113
  LoopStructural/modelling/intrusions/intrusion_frame_builder.py,sha256=Q1TPHxREcrO7Rw71nUfACZHfYnISLjqlgkUNTPT324k,40143
109
114
  LoopStructural/modelling/intrusions/intrusion_support_functions.py,sha256=wodakheMD62WJyoKnyX8UO-C1pje0I-5kHQEoDqShzo,13951
110
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111
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112
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115
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116
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117
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118
+ LoopStructural/utils/colours.py,sha256=73FKc2wr4c2UZL1gpyTVUo1v_FAlF7TNteGIdnz7InU,1137
113
119
  LoopStructural/utils/config.py,sha256=ITGOtZTo2_QBwXkG_0AFANfE90J9siCXLzxypVmg9QA,414
114
120
  LoopStructural/utils/dtm_creator.py,sha256=-yqGG0wyEJfTCCDghz058wull1q3zGFASjeu8oDgYnk,535
115
121
  LoopStructural/utils/exceptions.py,sha256=SJboJ7ncMqVX-ib7MMizClwMrFZRHQhjZr2eCnVwnQE,500
122
+ LoopStructural/utils/features.py,sha256=WCatS4lYBrURNvWvWwhOsDVUod9KIPNq3x0OHPbWctU,241
116
123
  LoopStructural/utils/helper.py,sha256=An9NuRH16cASUWq2ZakHc1tZt_AvUpgx8tv4cyWZEQk,6581
117
124
  LoopStructural/utils/json_encoder.py,sha256=5YNouf1TlhjEqOYgthd07MRXc0JLgxern-nyKSZ__ws,403
118
125
  LoopStructural/utils/linalg.py,sha256=tBXyu6NXcG2AcPuzUMnkVI4ncZWtE_MPHGj2PLXRwfY,123
119
126
  LoopStructural/utils/logging.py,sha256=dIUWEsS2lT4G1dsf4ZYXknTR7eQkrgvGA4b_E0vMIRU,2402
120
- LoopStructural/utils/maths.py,sha256=Y6xjNgfWD9TdaJaDuJJ_Uy8JNBzHA1fbVzQ8JPp_kW0,6668
127
+ LoopStructural/utils/maths.py,sha256=8iqdQdB2-bf14SzIzfFxvjWbzmPknqK9DI7CWEcW6XU,8402
121
128
  LoopStructural/utils/regions.py,sha256=LvcOCPudF4u95-GKBOZqXVxOEcR3cOFgFpcs5x43sMk,3914
122
129
  LoopStructural/utils/typing.py,sha256=29uVSTZdzXXH-jdlaYyBWZ1gQ2-nlZ2-XoVgG_PXNFY,157
123
130
  LoopStructural/utils/utils.py,sha256=2Z4zVE6G752-SPmM29zebk82bROJxEwi_YiiJjcVED4,2438
124
131
  LoopStructural/visualisation/__init__.py,sha256=5BDgKor8-ae6DrS7IZybJ3Wq_pTnCchxuY4EgzA7v1M,318
125
- LoopStructural-1.6.1.dist-info/LICENSE,sha256=ZqGeNFOgmYevj7Ld7Q-kR4lAxWXuBRUdUmPC6XM_py8,1071
126
- LoopStructural-1.6.1.dist-info/METADATA,sha256=B_oF9J3Gjg7KBEaDGHma20b0IpW5bZqydSqmDPXY01E,4958
127
- LoopStructural-1.6.1.dist-info/WHEEL,sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs,91
128
- LoopStructural-1.6.1.dist-info/top_level.txt,sha256=QtQErKzYHfg6ddxTQ1NyaTxXBVM6qAqrM_vxEPyXZLg,15
129
- LoopStructural-1.6.1.dist-info/RECORD,,
132
+ LoopStructural-1.6.6.dist-info/LICENSE,sha256=ZqGeNFOgmYevj7Ld7Q-kR4lAxWXuBRUdUmPC6XM_py8,1071
133
+ LoopStructural-1.6.6.dist-info/METADATA,sha256=nwUNFHQGm-gSVIajeYytyRanadnCu2znYwD5gpIGcTw,6399
134
+ LoopStructural-1.6.6.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
135
+ LoopStructural-1.6.6.dist-info/top_level.txt,sha256=QtQErKzYHfg6ddxTQ1NyaTxXBVM6qAqrM_vxEPyXZLg,15
136
+ LoopStructural-1.6.6.dist-info/RECORD,,
{LoopStructural-1.6.1.dist-info → LoopStructural-1.6.6.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (72.1.0)
2
+ Generator: setuptools (75.8.0)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
LoopStructural/modelling/features/fold/_fold_rotation_angle.py DELETED
@@ -1,149 +0,0 @@
1
- import numpy as np
2
- from scipy.optimize import curve_fit
3
-
4
- from ....modelling.features.fold._fold_rotation_angle_feature import (
5
- fourier_series,
6
- )
7
- from ....modelling.features.fold import SVariogram
8
-
9
- from ....utils import getLogger
10
-
11
- logger = getLogger(__name__)
12
-
13
-
14
- class FoldRotationAngle:
15
- def __init__(self, rotation_angle, fold_frame_coordinate, svario=False):
16
- """
17
-
18
- Parameters
19
- ----------
20
- rotation_angle
21
- fold_frame_coordinate
22
- svario
23
- """
24
- self.rotation_angle = rotation_angle
25
- self.fold_frame_coordinate = fold_frame_coordinate
26
- self.fold_rotation_function = None
27
- self.svario = None
28
- if svario:
29
- self.svario = SVariogram(self.fold_frame_coordinate, self.rotation_angle)
30
- self.fitted_params = None
31
-
32
- def fit_fourier_series(
33
- self, wl=None, lags=None, nlag=None, lag=None, skip_variogram=False, **kwargs
34
- ):
35
- """
36
-
37
- Parameters
38
- ----------
39
- wl
40
- lags
41
- nlag
42
- lag
43
-
44
- Returns
45
- -------
46
-
47
- """
48
- if self.svario is None:
49
- self.svario = SVariogram(self.fold_frame_coordinate, self.rotation_angle)
50
- if not skip_variogram:
51
- self.svario.calc_semivariogram(lags=lags, nlag=nlag, lag=lag)
52
- if wl is None:
53
- wl = self.svario.find_wavelengths(lags=lags, nlag=nlag, lag=lag)
54
- # for now only consider single fold wavelength
55
- wl = wl[0]
56
- guess = np.zeros(4)
57
- guess[3] = wl # np.max(limb_wl)
58
- logger.info(f"Guess: {guess[0]} {guess[1]} {guess[2]} {guess[3]}")
59
- # mask nans
60
- mask = np.logical_or(~np.isnan(self.fold_frame_coordinate), ~np.isnan(self.rotation_angle))
61
- logger.info(
62
- f"There are {np.sum(~mask)} nans for the fold limb rotation angle and { np.sum(mask)} observations"
63
- )
64
-
65
- if np.sum(mask) < len(guess):
66
- logger.error(
67
- "Not enough data points to fit Fourier series setting " "fold rotation angle" "to 0"
68
- )
69
- self.fold_rotation_function = lambda x: np.zeros(x.shape)
70
- else:
71
- try:
72
- # try fitting using wavelength guess
73
- popt, pcov = curve_fit(
74
- fourier_series,
75
- self.fold_frame_coordinate[mask],
76
- np.tan(np.deg2rad(self.rotation_angle[mask])),
77
- guess,
78
- )
79
- except RuntimeError:
80
- try:
81
- # if fitting failed, try with just 0s
82
- logger.info("Running curve fit without initial guess")
83
- popt, pcov = curve_fit(
84
- fourier_series,
85
- self.fold_frame_coordinate[mask],
86
- np.tan(np.deg2rad(self.rotation_angle[mask])),
87
- )
88
- except RuntimeError:
89
- # otherwise set the fourier series parameters to 0
90
- popt = guess
91
- logger.error("Could not fit curve to S-Plot, check the wavelength")
92
- logger.info(f"Fitted: {popt[0]} {popt[1]} {popt[2]} {popt[3]}")
93
- self.fold_rotation_function = lambda x: np.rad2deg(
94
- np.arctan(fourier_series(x, popt[0], popt[1], popt[2], popt[3]))
95
- )
96
- self.fitted_params = popt
97
-
98
- def __call__(self, fold_frame_coordinate):
99
- """
100
-
101
- Parameters
102
- ----------
103
- fold_frame_coordinate
104
-
105
- Returns
106
- -------
107
-
108
- """
109
- return self.fold_rotation_function(fold_frame_coordinate)
110
-
111
- def calculate_misfit(self):
112
- """
113
-
114
- Returns
115
- -------
116
-
117
- """
118
- return np.tan(np.deg2rad(self.rotation_angle)) - np.tan(
119
- np.deg2rad(self.__call__(self.fold_frame_coordinate))
120
- )
121
-
122
- def set_function(self, function):
123
- """
124
-
125
- Parameters
126
- ----------
127
- function
128
-
129
- Returns
130
- -------
131
-
132
- """
133
- self.fold_rotation_function = function
134
-
135
- def find_hinges(self, range, step):
136
-
137
- import scipy.optimize as optimize
138
-
139
- def fra(x):
140
- x = np.array([x])
141
- return self.__call__(x)
142
-
143
- roots = []
144
- x = range[0]
145
- while x < range[1]:
146
- result = optimize.root_scalar(fra, bracket=[x, x + step])
147
- roots.append(result.root)
148
- x += step
149
- return roots
LoopStructural-1.6.1.dist-info/METADATA DELETED
@@ -1,81 +0,0 @@
1
- Metadata-Version: 2.1
2
- Name: LoopStructural
3
- Version: 1.6.1
4
- Summary: 3D geological modelling
5
- Author-email: Lachlan Grose <lachlan.grose@monash.edu>
6
- License: MIT
7
- Project-URL: Documentation, https://Loop3d.org/LoopStructural/
8
- Project-URL: Bug Tracker, https://github.com/loop3d/loopstructural/issues
9
- Project-URL: Source Code, https://github.com/loop3d/loopstructural
10
- Keywords: earth sciences,geology,3-D modelling,structural geology,uncertainty
11
- Classifier: Development Status :: 5 - Production/Stable
12
- Classifier: Intended Audience :: Science/Research
13
- Classifier: Topic :: Scientific/Engineering :: Information Analysis
14
- Classifier: License :: OSI Approved :: MIT License
15
- Classifier: Operating System :: Microsoft :: Windows
16
- Classifier: Operating System :: POSIX
17
- Classifier: Operating System :: MacOS
18
- Classifier: Programming Language :: Python :: 3.8
19
- Classifier: Programming Language :: Python :: 3.9
20
- Classifier: Programming Language :: Python :: 3.10
21
- Classifier: Programming Language :: Python :: 3.11
22
- Classifier: Programming Language :: Python :: 3.12
23
- Requires-Python: >=3.8
24
- Description-Content-Type: text/markdown
25
- License-File: LICENSE
26
- Requires-Dist: numpy >=1.18
27
- Requires-Dist: pandas
28
- Requires-Dist: scipy
29
- Requires-Dist: scikit-image
30
- Requires-Dist: scikit-learn
31
- Requires-Dist: tqdm
32
- Provides-Extra: all
33
- Requires-Dist: loopstructural[export,inequalities,visualisation] ; extra == 'all'
34
- Provides-Extra: export
35
- Requires-Dist: geoh5py ; extra == 'export'
36
- Requires-Dist: pyevtk ; extra == 'export'
37
- Requires-Dist: dill ; extra == 'export'
38
- Provides-Extra: inequalities
39
- Requires-Dist: loopsolver ; extra == 'inequalities'
40
- Provides-Extra: jupyter
41
- Requires-Dist: pyvista[all] ; extra == 'jupyter'
42
- Requires-Dist: tqdm ; extra == 'jupyter'
43
- Provides-Extra: visualisation
44
- Requires-Dist: matplotlib ; extra == 'visualisation'
45
- Requires-Dist: pyvista ; extra == 'visualisation'
46
- Requires-Dist: loopstructuralviusualisation >0.1.4 ; extra == 'visualisation'
47
-
48
- # LoopStructural: Loop3D Geological Forward Modeling Engine.
49
- ![3D model of Hamersley created using loopstructural](docs/source/images/image823.png)
50
- ![Continuous integration and deployment](https://github.com/Loop3D/LoopStructural/workflows/Continuous%20integration%20and%20deployment/badge.svg)
51
- ![Publish Docker Hub](https://github.com/Loop3D/LoopStructural/workflows/Publish%20Docker%20Hub/badge.svg)
52
- [![PyPI version](https://badge.fury.io/py/LoopStructural.svg)](https://badge.fury.io/py/LoopStructural)
53
- [![GitHub license](https://img.shields.io/github/license/Naereen/StrapDown.js.svg)](https://github.com/Loop3D/LoopStructural/blob/master/LICENSE)
54
- [![Documentation loop3d.github.io/LoopStructural/](https://img.shields.io/badge/docs-githubio-brightgreen)](https://loop3d.github.io/LoopStructural)
55
-
56
-
57
- LoopStructural is the 3D geological modelling library for Loop ([Loop3d.org](https://loop3d.org/)). The development of LoopStructural is lead by **Lachlan Grose** as an ARC (LP170100985) post-doc at Monash University. **Laurent Ailleres** and **Gautier Laurent** have made significant contributions to the conceptual design and integration of geological concepts into the geological modelling workflow. **Roy Thomson** and **Yohan de Rose** have contributed to the implementation and integration of LoopStructural into the Loop workflow.
58
-
59
- Loop is led by Laurent Ailleres (Monash University) with a team of Work Package leaders from:
60
- * Monash University: Roy Thomson, Lachlan Grose and Robin Armit
61
- * University of Western Australia: Mark Jessell, Jeremie Giraud, Mark Lindsay and Guillaume Pirot
62
- * Geological Survey of Canada: Boyan Brodaric and Eric de Kemp
63
-
64
- The project benefits from in-kind contributions from the Geological Survey of Canada, the British Geological Survey, the French Bureau de Recherches Geologiques et Minieres, the RING group at the Universite de Lorraine, the RWTH in Aachen, Germany and AUSCOPE
65
-
66
- * Python/cython implementation of a Discrete interpolatiors
67
- * Fold interpolation using constraints outlined in Laurent 2016 with fold geostatistical tools shown in Grose et al., 2017
68
- * Fault interpolation
69
-
70
- If you want to use LoopStructural the easiest way to get started is to use a docker container and a jupyter notebook environment
71
-
72
- 1. Pull the loopstructural docker image `docker pull lachlangrose/loopstructural`
73
- 2. Start a docker container `docker run -it -p 8888:8888 lachlangrose/loopstructural`
74
-
75
- ## Documentation
76
- The LoopStructural documentation can be found [here](https://loop3d.github.io/LoopStructural)
77
- ## Problems
78
- Any bugs/feature requests/comments please create a new [issue](https://github.com/Loop3D/LoopStructural/issues).
79
-
80
- ## Acknowledgements
81
- *The Loop platform is an open source 3D probabilistic geological and geophysical modelling platform, initiated by Geoscience Australia and the OneGeology consortium. The project is funded by Australian territory, State and Federal Geological Surveys, the Australian Research Council and the MinEx Collaborative Research Centre.*