LoopStructural 1.0.9__cp38-cp38-win32.whl

LoopStructural/visualisation/rotation_angle_plotter.py

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+import logging
+
+import matplotlib.pyplot as plt
+import numpy as np
+
+from LoopStructural.utils import getLogger
+logger = getLogger(__name__)
+
+
+class RotationAnglePlotter:
+    def __init__(self, feature, axis=True):
+        """
+
+        """
+        self.fig, self.ax = plt.subplots(2, 2, figsize=(30, 15))
+        self.ax[0][0].set_ylim(-90, 90)
+        self.ax[1][0].set_ylim(-90, 90)
+        self.feature = feature
+
+    def plot(self, x, y, ix, iy, symb,**kwargs):
+        """
+
+        Parameters
+        ----------
+        x : np.array
+            vector of x
+        y
+        ix
+        iy
+        symb
+
+        Returns
+        -------
+
+        """
+        return self.ax[iy][ix].plot(x, y, symb,**kwargs)
+    def default_titles(self):
+        self.ax[0][0].set_title('Fold Axis S-Plot')
+        self.ax[0][1].set_title('Fold Axis S-Variogram')
+        self.ax[1][0].set_title('Fold Limb S-Plot')
+        self.ax[1][1].set_title('Fold Limb S-Variogram')
+
+        self.ax[1][1].set_xlabel('Variogram Steps')
+        self.ax[1][1].set_ylabel('Fold Limb S-Variogram')
+        self.ax[1][0].set_ylabel('Fold Limb Rotation Angle')
+        self.ax[1][0].set_xlabel('Fold Frame Axial Surface Field')
+
+        self.ax[0][1].set_xlabel('Variogram Steps')
+        self.ax[0][1].set_ylabel('Fold Axis S-Variogram')
+        self.ax[0][0].set_ylabel('Fold Axis Rotation Angle')
+        self.ax[0][0].set_xlabel('Fold Frame Axis Direction Field')
+    def add_fold_limb_data(self, symb="bo",**kwargs):
+        fold_frame = self.feature.fold.fold_limb_rotation.fold_frame_coordinate
+        rotation = self.feature.fold.fold_limb_rotation.rotation_angle
+        return self.plot(fold_frame, rotation, 0, 1, symb,**kwargs)
+        
+
+    def add_fold_limb_curve(self, symb='r-',**kwargs):
+        x = np.linspace(self.feature.fold.foldframe[0].min(),self.feature.fold.foldframe[0].max(),100)
+        return self.plot(x,self.feature.fold.fold_limb_rotation(x), 0, 1, symb,**kwargs)
+
+    def add_axis_svariogram(self, symb='bo',**kwargs):
+        svariogram = self.feature.fold.fold_axis_rotation.svario
+        if svariogram:
+            svariogram.calc_semivariogram()
+            return self.plot(svariogram.lags, svariogram.variogram, 1, 0, symb,**kwargs)
+
+    def add_limb_svariogram(self, symb='bo', **kwargs):
+        svariogram = self.feature.fold.fold_limb_rotation.svario
+        if svariogram:
+            svariogram.calc_semivariogram()
+            return self.plot(svariogram.lags, svariogram.variogram, 1, 1, symb,**kwargs)
+
+    def add_fold_axis_data(self, symb='bo',**kwargs):
+        fold_frame = self.feature.fold.fold_axis_rotation.fold_frame_coordinate
+        rotation = self.feature.fold.fold_axis_rotation.rotation_angle
+        return self.plot(fold_frame, rotation, 0, 0, symb,**kwargs)
+
+    def add_fold_axis_curve(self, symb='r-',**kwargs):
+        x = np.linspace(self.feature.fold.foldframe[1].min(),self.feature.fold.foldframe[1].max(),100)
+        return self.plot(x,self.feature.fold.fold_axis_rotation(x), 0, 0, symb,**kwargs)
+
+

LoopStructural/visualisation/sphinx_scraper.py

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+from LoopStructural.visualisation import model_visualisation as model_visualisation
+def _get_loop_visualisation_scraper():
+    return Scraper()
+
+class Scraper:
+    """
+    Save ``pyvista.Plotter`` objects.
+
+    Used by sphinx-gallery to generate the plots from the code in the examples.
+
+    Pass an instance of this class to ``sphinx_gallery_conf`` in your
+    ``conf.py`` as the ``"image_scrapers"`` argument.
+    """
+
+    def __call__(self, block, block_vars, gallery_conf):
+        """Save the figures generated after running example code.
+
+        Called by sphinx-gallery.
+
+        """
+        try:
+            from sphinx_gallery.scrapers import figure_rst
+        except ImportError:
+            raise ImportError('You must install `sphinx_gallery`')
+        image_names = list()
+        image_path_iterator = block_vars["image_path_iterator"]
+        figures = model_visualisation._OPEN_VIEWERS
+        for address, plotter in figures.items():
+            plotter.lv['background'] = 'white'
+            fname = next(image_path_iterator)
+            plotter.save(fname)
+            image_names.append(fname)
+        model_visualisation.close_all() # close and clear all plotters
+        return figure_rst(image_names, gallery_conf["src_dir"])

LoopStructural/visualisation/stratigraphic_column.py

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+import numpy as np
+import matplotlib.pyplot as plt
+from matplotlib import cm
+from matplotlib.patches import Polygon
+from matplotlib.collections import PatchCollection
+
+class StratigraphicColumnView:
+    def __init__(self,model,ax=None,cmap=None, labels = None):
+        n_units = 0 #count how many discrete colours
+        xmin = 0
+        ymin = 0
+        ymax = 1
+        xmax = 1
+        if ax is None:
+            fig, ax = plt.subplots(figsize=(2,10))
+        patches = []
+        for g in model.stratigraphic_column.keys():
+            if g == 'faults':
+                continue
+            for u in model.stratigraphic_column[g].keys():
+                n_units+=1
+                ymin = -model.stratigraphic_column[g][u]['min']
+                if np.isinf(model.stratigraphic_column[g][u]['min']):
+                    ymin = 0
+                ymax = -model.stratigraphic_column[g][u]['max']
+                if np.isinf(ymax):
+                    ymin = ymax + (ymax-ymin)*(1+np.random.rand())
+                polygon_points = np.array([[xmin,ymin],[xmax,ymin],[xmax,ymax],[xmin,ymax]])
+                patches.append(Polygon(polygon_points))
+                xy = (0,ymin+(ymax-ymin)/2)
+                if labels:
+                    ax.annotate(labels[u],xy)
+                else:
+                    ax.annotate(u,xy)
+        if cmap is None:
+            import matplotlib.colors as colors
+            colours = []
+            boundaries = []
+            data = []
+            for g in model.stratigraphic_column.keys():
+                if g == 'faults':
+                    continue
+                for u, v  in model.stratigraphic_column[g].items():
+                    data.append((v['id'],v['colour']))
+                    colours.append(v['colour'])
+                    boundaries.append(v['id'])#print(u,v)
+            cmap = colors.ListedColormap(colours)
+        else:
+            cmap = cm.get_cmap(cmap,n_units-1)
+        ci = 0
+        p = PatchCollection(patches, cmap=cmap)
+
+        colors = np.arange(len(patches))
+        p.set_array(np.array(colors))
+
+        ax.add_collection(p)
+
+        ax.set_ylim(ymax+(ymax-ymin)*-2,0)#ax.set_ylim(0,ymax)
+        ax.axis('off')
+        

LoopStructural-1.0.9.dist-info/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020 Lachlan Grose 
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

LoopStructural-1.0.9.dist-info/METADATA

@@ -0,0 +1,19 @@
+Metadata-Version: 2.1
+Name: LoopStructural
+Version: 1.0.9
+Summary: UNKNOWN
+Home-page: UNKNOWN
+Author: UNKNOWN
+Author-email: UNKNOWN
+License: UNKNOWN
+Platform: UNKNOWN
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: scipy
+Requires-Dist: scikit-image
+Requires-Dist: scikit-learn
+Requires-Dist: tqdm
+
+UNKNOWN
+
+

LoopStructural-1.0.9.dist-info/RECORD

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LoopStructural-1.0.9.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: bdist_wheel (0.36.2)
+Root-Is-Purelib: false
+Tag: cp38-cp38-win32
+

LoopStructural-1.0.9.dist-info/top_level.txt

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+LoopStructural
+tests