LoopStructural 1.0.3__zip → 1.0.71.dev0__zip

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Files changed (119) hide show
  1. Miniconda/envs/loop/Lib/site-packages/LoopStructural/__init__.py +12 -7
  2. Miniconda/envs/loop/Lib/site-packages/LoopStructural/__pycache__/__init__.cpython-36.pyc +0 -0
  3. Miniconda/envs/loop/Lib/site-packages/LoopStructural/datasets/__pycache__/__init__.cpython-36.pyc +0 -0
  4. Miniconda/envs/loop/Lib/site-packages/LoopStructural/datasets/__pycache__/_base.cpython-36.pyc +0 -0
  5. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__init__.py +3 -0
  6. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/__init__.cpython-36.pyc +0 -0
  7. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/base_structured_3d_support.cpython-36.pyc +0 -0
  8. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/discrete_fold_interpolator.cpython-36.pyc +0 -0
  9. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/discrete_interpolator.cpython-36.pyc +0 -0
  10. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/finite_difference_interpolator.cpython-36.pyc +0 -0
  11. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/geological_interpolator.cpython-36.pyc +0 -0
  12. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/operator.cpython-36.pyc +0 -0
  13. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/piecewiselinear_interpolator.cpython-36.pyc +0 -0
  14. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/structured_grid.cpython-36.pyc +0 -0
  15. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/structured_tetra.cpython-36.pyc +0 -0
  16. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/__pycache__/surfe_wrapper.cpython-36.pyc +0 -0
  17. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/base_structured_3d_support.py +101 -0
  18. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/cython/__pycache__/__init__.cpython-36.pyc +0 -0
  19. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/cython/dsi_helper.c +4137 -2716
  20. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/cython/dsi_helper.cp36-win_amd64.pyd +0 -0
  21. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/discrete_fold_interpolator.py +56 -22
  22. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/discrete_interpolator.py +61 -28
  23. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/finite_difference_interpolator.py +71 -11
  24. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/geological_interpolator.py +22 -3
  25. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/operator.py +16 -1
  26. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/piecewiselinear_interpolator.py +150 -11
  27. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/structured_grid.py +31 -69
  28. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/structured_tetra.py +89 -45
  29. Miniconda/envs/loop/Lib/site-packages/LoopStructural/interpolators/surfe_wrapper.py +7 -8
  30. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/__pycache__/__init__.cpython-36.pyc +0 -0
  31. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/core/__pycache__/__init__.cpython-36.pyc +0 -0
  32. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/core/__pycache__/geological_model.cpython-36.pyc +0 -0
  33. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/core/__pycache__/geological_model_graph.cpython-36.pyc +0 -0
  34. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/core/__pycache__/stratigraphic_column.cpython-36.pyc +0 -0
  35. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/core/geological_model.py +515 -197
  36. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/core/geological_model_graph.py +881 -0
  37. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/core/stratigraphic_column.py +5 -0
  38. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/__init__.py +1 -0
  39. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/__pycache__/__init__.cpython-36.pyc +0 -0
  40. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/__pycache__/fault_builder.cpython-36.pyc +0 -0
  41. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/__pycache__/fault_function.cpython-36.pyc +0 -0
  42. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/__pycache__/fault_function_feature.cpython-36.pyc +0 -0
  43. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/__pycache__/fault_segment.cpython-36.pyc +0 -0
  44. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/fault_builder.py +127 -0
  45. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/fault_function.py +2 -1
  46. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/fault_function_feature.py +2 -1
  47. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fault/fault_segment.py +30 -3
  48. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__init__.py +1 -0
  49. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/__init__.cpython-36.pyc +0 -0
  50. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/cross_product_geological_feature.cpython-36.pyc +0 -0
  51. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/geological_feature.cpython-36.pyc +0 -0
  52. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/geological_feature_builder.cpython-36.pyc +0 -0
  53. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/lambda_geological_feature.cpython-36.pyc +0 -0
  54. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/region_feature.cpython-36.pyc +0 -0
  55. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/structural_frame.cpython-36.pyc +0 -0
  56. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/structural_frame_builder.cpython-36.pyc +0 -0
  57. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/__pycache__/unconformity_feature.cpython-36.pyc +0 -0
  58. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/cross_product_geological_feature.py +18 -5
  59. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/geological_feature.py +22 -49
  60. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/geological_feature_builder.py +171 -47
  61. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/lambda_geological_feature.py +31 -0
  62. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/region_feature.py +3 -0
  63. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/structural_frame.py +28 -11
  64. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/structural_frame_builder.py +32 -22
  65. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/features/unconformity_feature.py +6 -1
  66. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/__pycache__/__init__.cpython-36.pyc +0 -0
  67. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/__pycache__/fold.cpython-36.pyc +0 -0
  68. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/__pycache__/fold_rotation_angle.cpython-36.pyc +0 -0
  69. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/__pycache__/fold_rotation_angle_feature.cpython-36.pyc +0 -0
  70. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/__pycache__/foldframe.cpython-36.pyc +0 -0
  71. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/__pycache__/svariogram.cpython-36.pyc +0 -0
  72. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/fold.py +13 -5
  73. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/fold_rotation_angle.py +5 -4
  74. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/fold_rotation_angle_feature.py +2 -1
  75. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/foldframe.py +7 -5
  76. Miniconda/envs/loop/Lib/site-packages/LoopStructural/modelling/fold/svariogram.py +2 -1
  77. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__init__.py +5 -1
  78. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/__init__.cpython-36.pyc +0 -0
  79. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/bounding_box.cpython-36.pyc +0 -0
  80. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/exceptions.cpython-36.pyc +0 -0
  81. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/helper.cpython-36.pyc +0 -0
  82. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/logging.cpython-36.pyc +0 -0
  83. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/map2loop.cpython-36.pyc +0 -0
  84. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/regions.cpython-36.pyc +0 -0
  85. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/__pycache__/utils.cpython-36.pyc +0 -0
  86. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/bounding_box.py +21 -0
  87. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/exceptions.py +2 -1
  88. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/helper.py +10 -2
  89. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/logging.py +60 -0
  90. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/map2loop.py +128 -37
  91. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/regions.py +11 -0
  92. Miniconda/envs/loop/Lib/site-packages/LoopStructural/utils/utils.py +40 -47
  93. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/__pycache__/__init__.cpython-36.pyc +0 -0
  94. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/__pycache__/map_viewer.cpython-36.pyc +0 -0
  95. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/__pycache__/model_plotter.cpython-36.pyc +0 -0
  96. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/__pycache__/model_visualisation.cpython-36.pyc +0 -0
  97. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/__pycache__/rotation_angle_plotter.cpython-36.pyc +0 -0
  98. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/__pycache__/sphinx_scraper.cpython-36.pyc +0 -0
  99. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/__pycache__/stratigraphic_column.cpython-36.pyc +0 -0
  100. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/map_viewer.py +236 -36
  101. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/model_plotter.py +2 -1
  102. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/model_visualisation.py +427 -79
  103. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/rotation_angle_plotter.py +29 -12
  104. Miniconda/envs/loop/Lib/site-packages/LoopStructural/visualisation/stratigraphic_column.py +60 -0
  105. Miniconda/envs/loop/Lib/site-packages/{LoopStructural-1.0.3-py3.6.egg-info → LoopStructural-1.0.71.dev0-py3.6.egg-info}/PKG-INFO +1 -1
  106. Miniconda/envs/loop/Lib/site-packages/{LoopStructural-1.0.3-py3.6.egg-info → LoopStructural-1.0.71.dev0-py3.6.egg-info}/SOURCES.txt +10 -5
  107. Miniconda/envs/loop/Lib/site-packages/LoopStructural-1.0.71.dev0-py3.6.egg-info/requires.txt +8 -0
  108. Miniconda/envs/loop/Lib/site-packages/tests/__pycache__/__init__.cpython-36.pyc +0 -0
  109. Miniconda/envs/loop/Lib/site-packages/LoopStructural-1.0.3-py3.6.egg-info/requires.txt +0 -3
  110. Miniconda/envs/loop/Lib/site-packages/tests/__pycache__/test_faults.cpython-36.pyc +0 -0
  111. Miniconda/envs/loop/Lib/site-packages/tests/__pycache__/test_fold.cpython-36.pyc +0 -0
  112. Miniconda/envs/loop/Lib/site-packages/tests/__pycache__/test_interpolator.cpython-36.pyc +0 -0
  113. Miniconda/envs/loop/Lib/site-packages/tests/__pycache__/test_refolded.cpython-36.pyc +0 -0
  114. Miniconda/envs/loop/Lib/site-packages/tests/test_faults.py +0 -17
  115. Miniconda/envs/loop/Lib/site-packages/tests/test_fold.py +0 -57
  116. Miniconda/envs/loop/Lib/site-packages/tests/test_interpolator.py +0 -88
  117. Miniconda/envs/loop/Lib/site-packages/tests/test_refolded.py +0 -22
  118. /Miniconda/envs/loop/Lib/site-packages/{LoopStructural-1.0.3-py3.6.egg-info → LoopStructural-1.0.71.dev0-py3.6.egg-info}/dependency_links.txt +0 -0
  119. /Miniconda/envs/loop/Lib/site-packages/{LoopStructural-1.0.3-py3.6.egg-info → LoopStructural-1.0.71.dev0-py3.6.egg-info}/top_level.txt +0 -0
@@ -1,3 +1,6 @@
1
+ """
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+ Wrapper for using surfepy
3
+ """
1
4
  import sys, os
2
5
 
3
6
  from LoopStructural.utils.helper import get_vectors
@@ -6,13 +9,9 @@ from .geological_interpolator import GeologicalInterpolator
6
9
  import logging
7
10
  import numpy as np
8
11
 
9
- logger = logging.getLogger(__name__)
12
+ from LoopStructural.utils import getLogger
13
+ logger = getLogger(__name__)
10
14
 
11
- if 'SURFE' in os.environ:
12
- sys.path.append(os.environ['SURFE'])
13
- if 'SURFE' not in os.environ:
14
- logger.error("Please add SURFE to your environment variables to specify the location \n "
15
- "of the SURFE binaries")
16
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  import surfepy
17
16
 
18
17
 
@@ -77,13 +76,13 @@ class SurfeRBFInterpolator(GeologicalInterpolator):
77
76
  regression = kwargs.get("regression_smoothing", 0.)
78
77
  if regression > 0:
79
78
  logger.info("Using regression smoothing %f" % regression)
80
-
79
+ self.surfe.SetRegressionSmoothing(True,regression)
81
80
  greedy = kwargs.get("greedy", (0, 0))
82
81
 
83
82
  if greedy[0] > 0 or greedy[1] > 0:
84
83
  logger.info("Using greedy algorithm: inferface %f and angular %f" %
85
84
  (greedy[0], greedy[1]))
86
- self.surfe.SetRegressionSmoothin(True, greedy[0], greedy[1])
85
+ self.surfe.SetGreedyAlgorithm(True, greedy[0], greedy[1])
87
86
  poly_order = kwargs.get('poly_order',None)
88
87
  if poly_order:
89
88
  logger.info("Setting poly order to %i"%poly_order)