HTSeq 2.1.2__cp310-cp310-macosx_10_15_x86_64.whl

HTSeq/StepVector.py

@@ -0,0 +1,629 @@
+# This file was automatically generated by SWIG (https://www.swig.org).
+# Version 4.2.0
+#
+# Do not make changes to this file unless you know what you are doing - modify
+# the SWIG interface file instead.
+
+from sys import version_info as _swig_python_version_info
+# Import the low-level C/C++ module
+if __package__ or "." in __name__:
+    from . import _StepVector
+else:
+    import _StepVector
+
+try:
+    import builtins as __builtin__
+except ImportError:
+    import __builtin__
+
+def _swig_repr(self):
+    try:
+        strthis = "proxy of " + self.this.__repr__()
+    except __builtin__.Exception:
+        strthis = ""
+    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
+
+
+def _swig_setattr_nondynamic_instance_variable(set):
+    def set_instance_attr(self, name, value):
+        if name == "this":
+            set(self, name, value)
+        elif name == "thisown":
+            self.this.own(value)
+        elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
+            set(self, name, value)
+        else:
+            raise AttributeError("You cannot add instance attributes to %s" % self)
+    return set_instance_attr
+
+
+def _swig_setattr_nondynamic_class_variable(set):
+    def set_class_attr(cls, name, value):
+        if hasattr(cls, name) and not isinstance(getattr(cls, name), property):
+            set(cls, name, value)
+        else:
+            raise AttributeError("You cannot add class attributes to %s" % cls)
+    return set_class_attr
+
+
+def _swig_add_metaclass(metaclass):
+    """Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
+    def wrapper(cls):
+        return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
+    return wrapper
+
+
+class _SwigNonDynamicMeta(type):
+    """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
+    __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
+
+
+class _Pair_long_float(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+    first = property(_StepVector._Pair_long_float_first_get, _StepVector._Pair_long_float_first_set)
+    second = property(_StepVector._Pair_long_float_second_get, _StepVector._Pair_long_float_second_set)
+
+    def __init__(self, first_, second_):
+        _StepVector._Pair_long_float_swiginit(self, _StepVector.new__Pair_long_float(first_, second_))
+    __swig_destroy__ = _StepVector.delete__Pair_long_float
+
+# Register _Pair_long_float in _StepVector:
+_StepVector._Pair_long_float_swigregister(_Pair_long_float)
+class _StepVector_Iterator_float(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self, first, last_):
+        _StepVector._StepVector_Iterator_float_swiginit(self, _StepVector.new__StepVector_Iterator_float(first, last_))
+
+    def __next__(self):
+        return _StepVector._StepVector_Iterator_float___next__(self)
+
+    def __iter__(self):
+        return _StepVector._StepVector_Iterator_float___iter__(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_Iterator_float
+
+# Register _StepVector_Iterator_float in _StepVector:
+_StepVector._StepVector_Iterator_float_swigregister(_StepVector_Iterator_float)
+class _StepVector_float(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self):
+        _StepVector._StepVector_float_swiginit(self, _StepVector.new__StepVector_float())
+
+    def set_value(self, _from, to, value):
+        return _StepVector._StepVector_float_set_value(self, _from, to, value)
+
+    def remove_step(self, i):
+        return _StepVector._StepVector_float_remove_step(self, i)
+
+    def add_value(self, _from, to, value):
+        return _StepVector._StepVector_float_add_value(self, _from, to, value)
+
+    def get_all_values_pystyle(self):
+        return _StepVector._StepVector_float_get_all_values_pystyle(self)
+
+    def get_values_pystyle(self, _from):
+        return _StepVector._StepVector_float_get_values_pystyle(self, _from)
+
+    def num_values(self):
+        return _StepVector._StepVector_float_num_values(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_float
+
+# Register _StepVector_float in _StepVector:
+_StepVector._StepVector_float_swigregister(_StepVector_float)
+cvar = _StepVector.cvar
+_StepVector_float.min_index = _StepVector.cvar._StepVector_float_min_index
+_StepVector_float.max_index = _StepVector.cvar._StepVector_float_max_index
+
+class _Pair_long_int(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+    first = property(_StepVector._Pair_long_int_first_get, _StepVector._Pair_long_int_first_set)
+    second = property(_StepVector._Pair_long_int_second_get, _StepVector._Pair_long_int_second_set)
+
+    def __init__(self, first_, second_):
+        _StepVector._Pair_long_int_swiginit(self, _StepVector.new__Pair_long_int(first_, second_))
+    __swig_destroy__ = _StepVector.delete__Pair_long_int
+
+# Register _Pair_long_int in _StepVector:
+_StepVector._Pair_long_int_swigregister(_Pair_long_int)
+class _StepVector_Iterator_int(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self, first, last_):
+        _StepVector._StepVector_Iterator_int_swiginit(self, _StepVector.new__StepVector_Iterator_int(first, last_))
+
+    def __next__(self):
+        return _StepVector._StepVector_Iterator_int___next__(self)
+
+    def __iter__(self):
+        return _StepVector._StepVector_Iterator_int___iter__(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_Iterator_int
+
+# Register _StepVector_Iterator_int in _StepVector:
+_StepVector._StepVector_Iterator_int_swigregister(_StepVector_Iterator_int)
+class _StepVector_int(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self):
+        _StepVector._StepVector_int_swiginit(self, _StepVector.new__StepVector_int())
+
+    def set_value(self, _from, to, value):
+        return _StepVector._StepVector_int_set_value(self, _from, to, value)
+
+    def remove_step(self, i):
+        return _StepVector._StepVector_int_remove_step(self, i)
+
+    def add_value(self, _from, to, value):
+        return _StepVector._StepVector_int_add_value(self, _from, to, value)
+
+    def get_all_values_pystyle(self):
+        return _StepVector._StepVector_int_get_all_values_pystyle(self)
+
+    def get_values_pystyle(self, _from):
+        return _StepVector._StepVector_int_get_values_pystyle(self, _from)
+
+    def num_values(self):
+        return _StepVector._StepVector_int_num_values(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_int
+
+# Register _StepVector_int in _StepVector:
+_StepVector._StepVector_int_swigregister(_StepVector_int)
+_StepVector_int.min_index = _StepVector.cvar._StepVector_int_min_index
+_StepVector_int.max_index = _StepVector.cvar._StepVector_int_max_index
+
+class _Pair_long_long(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+    first = property(_StepVector._Pair_long_long_first_get, _StepVector._Pair_long_long_first_set)
+    second = property(_StepVector._Pair_long_long_second_get, _StepVector._Pair_long_long_second_set)
+
+    def __init__(self, first_, second_):
+        _StepVector._Pair_long_long_swiginit(self, _StepVector.new__Pair_long_long(first_, second_))
+    __swig_destroy__ = _StepVector.delete__Pair_long_long
+
+# Register _Pair_long_long in _StepVector:
+_StepVector._Pair_long_long_swigregister(_Pair_long_long)
+class _StepVector_Iterator_long(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self, first, last_):
+        _StepVector._StepVector_Iterator_long_swiginit(self, _StepVector.new__StepVector_Iterator_long(first, last_))
+
+    def __next__(self):
+        return _StepVector._StepVector_Iterator_long___next__(self)
+
+    def __iter__(self):
+        return _StepVector._StepVector_Iterator_long___iter__(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_Iterator_long
+
+# Register _StepVector_Iterator_long in _StepVector:
+_StepVector._StepVector_Iterator_long_swigregister(_StepVector_Iterator_long)
+class _StepVector_long(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self):
+        _StepVector._StepVector_long_swiginit(self, _StepVector.new__StepVector_long())
+
+    def set_value(self, _from, to, value):
+        return _StepVector._StepVector_long_set_value(self, _from, to, value)
+
+    def remove_step(self, i):
+        return _StepVector._StepVector_long_remove_step(self, i)
+
+    def add_value(self, _from, to, value):
+        return _StepVector._StepVector_long_add_value(self, _from, to, value)
+
+    def get_all_values_pystyle(self):
+        return _StepVector._StepVector_long_get_all_values_pystyle(self)
+
+    def get_values_pystyle(self, _from):
+        return _StepVector._StepVector_long_get_values_pystyle(self, _from)
+
+    def num_values(self):
+        return _StepVector._StepVector_long_num_values(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_long
+
+# Register _StepVector_long in _StepVector:
+_StepVector._StepVector_long_swigregister(_StepVector_long)
+_StepVector_long.min_index = _StepVector.cvar._StepVector_long_min_index
+_StepVector_long.max_index = _StepVector.cvar._StepVector_long_max_index
+
+class _Pair_long_bool(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+    first = property(_StepVector._Pair_long_bool_first_get, _StepVector._Pair_long_bool_first_set)
+    second = property(_StepVector._Pair_long_bool_second_get, _StepVector._Pair_long_bool_second_set)
+
+    def __init__(self, first_, second_):
+        _StepVector._Pair_long_bool_swiginit(self, _StepVector.new__Pair_long_bool(first_, second_))
+    __swig_destroy__ = _StepVector.delete__Pair_long_bool
+
+# Register _Pair_long_bool in _StepVector:
+_StepVector._Pair_long_bool_swigregister(_Pair_long_bool)
+class _StepVector_Iterator_bool(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self, first, last_):
+        _StepVector._StepVector_Iterator_bool_swiginit(self, _StepVector.new__StepVector_Iterator_bool(first, last_))
+
+    def __next__(self):
+        return _StepVector._StepVector_Iterator_bool___next__(self)
+
+    def __iter__(self):
+        return _StepVector._StepVector_Iterator_bool___iter__(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_Iterator_bool
+
+# Register _StepVector_Iterator_bool in _StepVector:
+_StepVector._StepVector_Iterator_bool_swigregister(_StepVector_Iterator_bool)
+class _StepVector_bool(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self):
+        _StepVector._StepVector_bool_swiginit(self, _StepVector.new__StepVector_bool())
+
+    def set_value(self, _from, to, value):
+        return _StepVector._StepVector_bool_set_value(self, _from, to, value)
+
+    def remove_step(self, i):
+        return _StepVector._StepVector_bool_remove_step(self, i)
+
+    def add_value(self, _from, to, value):
+        return _StepVector._StepVector_bool_add_value(self, _from, to, value)
+
+    def get_all_values_pystyle(self):
+        return _StepVector._StepVector_bool_get_all_values_pystyle(self)
+
+    def get_values_pystyle(self, _from):
+        return _StepVector._StepVector_bool_get_values_pystyle(self, _from)
+
+    def num_values(self):
+        return _StepVector._StepVector_bool_num_values(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_bool
+
+# Register _StepVector_bool in _StepVector:
+_StepVector._StepVector_bool_swigregister(_StepVector_bool)
+_StepVector_bool.min_index = _StepVector.cvar._StepVector_bool_min_index
+_StepVector_bool.max_index = _StepVector.cvar._StepVector_bool_max_index
+
+class _Pair_long_obj(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+    first = property(_StepVector._Pair_long_obj_first_get, _StepVector._Pair_long_obj_first_set)
+    second = property(_StepVector._Pair_long_obj_second_get, _StepVector._Pair_long_obj_second_set)
+
+    def __init__(self, first_, second_):
+        _StepVector._Pair_long_obj_swiginit(self, _StepVector.new__Pair_long_obj(first_, second_))
+    __swig_destroy__ = _StepVector.delete__Pair_long_obj
+
+# Register _Pair_long_obj in _StepVector:
+_StepVector._Pair_long_obj_swigregister(_Pair_long_obj)
+class _StepVector_Iterator_obj(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self, first, last_):
+        _StepVector._StepVector_Iterator_obj_swiginit(self, _StepVector.new__StepVector_Iterator_obj(first, last_))
+
+    def __next__(self):
+        return _StepVector._StepVector_Iterator_obj___next__(self)
+
+    def __iter__(self):
+        return _StepVector._StepVector_Iterator_obj___iter__(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_Iterator_obj
+
+# Register _StepVector_Iterator_obj in _StepVector:
+_StepVector._StepVector_Iterator_obj_swigregister(_StepVector_Iterator_obj)
+class _StepVector_obj(object):
+    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
+    __repr__ = _swig_repr
+
+    def __init__(self):
+        _StepVector._StepVector_obj_swiginit(self, _StepVector.new__StepVector_obj())
+
+    def set_value(self, _from, to, value):
+        return _StepVector._StepVector_obj_set_value(self, _from, to, value)
+
+    def remove_step(self, i):
+        return _StepVector._StepVector_obj_remove_step(self, i)
+
+    def add_value(self, _from, to, value):
+        return _StepVector._StepVector_obj_add_value(self, _from, to, value)
+
+    def get_all_values_pystyle(self):
+        return _StepVector._StepVector_obj_get_all_values_pystyle(self)
+
+    def get_values_pystyle(self, _from):
+        return _StepVector._StepVector_obj_get_values_pystyle(self, _from)
+
+    def num_values(self):
+        return _StepVector._StepVector_obj_num_values(self)
+    __swig_destroy__ = _StepVector.delete__StepVector_obj
+
+# Register _StepVector_obj in _StepVector:
+_StepVector._StepVector_obj_swigregister(_StepVector_obj)
+_StepVector_obj.min_index = _StepVector.cvar._StepVector_obj_min_index
+_StepVector_obj.max_index = _StepVector.cvar._StepVector_obj_max_index
+
+
+
+import sys
+
+class StepVector(object):
+    """A step vector is a vector with integer indices that is able to store
+    data efficiently if it is piece-wise constant, i.e., if the values change
+    in "steps". So, if a number of adjacent vectort elements have the same
+    value, this values will be stored only once.
+
+    The data can be either one of a number of elementary types, or any object.
+
+    Usage example:
+
+    >>> sv = StepVector.StepVector(20)
+    >>> sv[5:17] = 13
+    >>> sv[12]
+    13.0
+    >>> list(sv)
+    [0.0, 0.0, 0.0, 0.0, 0.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 0.0, 0.0, 0.0]
+    >>> list(sv.get_steps())
+    [(0, 5, 0.0), (5, 17, 13.0), (17, 20, 0.0)]
+
+    """
+
+    @classmethod
+    def create(cls, length=sys.maxsize, typecode='d', start_index=0):
+        """Construct a StepVector of the given length, with indices starting
+        at the given start_index and counting up to (but not including)
+        start_index + length.
+
+        The typecode may be:
+          'd' for float values (C type 'double'),
+          'i' for int values,
+          'l' for long int values,
+          'b' for Boolean values,
+          'O' for arbitrary Python objects as value.
+
+        The vector is initialized with the value zero (or, for typecode 'O',
+        with None).
+        """
+        if typecode == 'd':
+            swigclass = _StepVector_float
+        elif typecode == 'i':
+            swigclass = _StepVector_int
+        elif typecode == 'l':
+            swigclass = _StepVector_long
+        elif typecode == 'b':
+            swigclass = _StepVector_bool
+        elif typecode == 'O':
+            swigclass = _StepVector_obj
+        else:
+            raise ValueError("unsupported typecode")
+        obj = cls()
+        obj._typecode = typecode
+        obj._swigobj = swigclass()
+        obj.start = start_index
+        obj.stop = start_index + length
+        return obj
+
+    def __setitem__(self, index, value):
+        """To set element i of StepVector sv to the value v, write
+            sv[i] = v
+        If you want to set a whole step, say, all values from i to j (not
+        including j), write
+            sv[i:j] = v
+        Note that the StepVector class will only notice that all the values
+        from i to j are equal if you assign them in this fashion. Assigning each
+        item individually in a loop from i to j will result in the value v being
+        stored many times.
+        """
+        if isinstance(value, StepVector):
+            if self._swigobj is value._swigobj and \
+                    value.start == index.start and value.stop == index.stop:
+                return
+            else:
+                raise NotImplemented("Stepvector-to-Stepvector assignment still missing")
+        if isinstance(index, slice):
+            if index.step is not None and index.step != 1:
+                 raise ValueError("Striding slices (i.e., step != 1) are not supported")
+            if index.start is None:
+                start = self.start
+            else:
+                if index.start < self.start:
+                    raise IndexError("start too small")
+                start = index.start
+            if index.stop is None:
+                stop = self.stop
+            else:
+                if index.stop > self.stop:
+                    raise IndexError("stop too large")
+                stop = index.stop
+
+# Note the "-1": The C++ object uses closed intervals, but we follow
+# Python convention here and use half-open ones.
+            self._swigobj.set_value(start, stop-1, value)
+
+        else:
+            self._swigobj.set_value(index, index, value)
+
+    def get_steps(self, values_only=False, merge_steps=True):
+        """Iterate over the steps of the vector.
+
+        Args:
+            values_only (bool): Return only the values of the StepVector, without
+            the index boundaries.
+
+            merge_steps (bool): Perform on-the-fly merging of consecutive steps if
+            their value is the same. Setting this option ensures that consecutive
+            steps have distinct values.
+
+        Returns: an iterator of triplets, with each triplet containing the start
+            index, end index, and value of that step. If values_only is True, the
+            function returns an iterator of the values only.
+        """
+        startvals = self._swigobj.get_values_pystyle(self.start)
+        prevstart = self.start
+        prevval = next(startvals).second
+        for pair in startvals:
+            stepstart, value = pair.first, pair.second
+            if merge_steps and value == prevval:
+                continue
+            if (self.stop is not None) and (stepstart >= self.stop):
+                if not values_only:
+                    yield prevstart, self.stop, prevval
+                else:
+                    yield prevval
+                return
+            if not values_only:
+                yield prevstart, stepstart, prevval
+            else:
+                yield prevval
+            prevstart, prevval = stepstart, value
+        else:
+            if not values_only:
+                yield prevstart, min(self.stop, self._swigobj.max_index + 1), prevval
+            else:
+                yield prevval
+
+    def __getitem__(self, index):
+        """Given a StepVector sv, writing sv[i] returns sv's element i (where i
+        is an integer). 
+
+        If you use a slice, i.e. 'sv[i:j]', you get a view on the StepVector,
+        i.e., the same data, but changed boundaries.
+
+        Striding slices, i.e. 'sv[i:j:2]' are not supported.
+        """
+        if isinstance(index, slice):
+            if index.step is not None and index.step != 1:
+                 raise ValueError("Striding slices (i.e., step != 1) are not supported")
+            if index.start is None:
+                start = self.start
+            else:
+                if index.start < self.start:
+                    raise IndexError("start too small")
+                start = index.start
+            if index.stop is None:
+                stop = self.stop
+            else:
+                if index.stop > self.stop:
+                    raise IndexError("stop too large")
+                stop = index.stop
+            res = self.__class__()
+            res._typecode = self.typecode
+            res._swigobj = self._swigobj
+            res.start = start
+            res.stop = stop
+            return res
+        else:
+            return next(self._swigobj.get_values_pystyle(index)).second
+
+    def remove_step(self, start):
+        """Remve a step with this starting coordinate, in place.
+
+        Args:
+            start: Starting coordinate of the step.
+        """
+        self._swigobj.remove_step(start)
+
+    def __iter__(self):
+        """When asked to provide an iterator, a StepVector will yield all its
+        values, repeating each value according to the length of the step.
+        Hence, calling, e.g., 'list(sv)' will transform the StepVector 'sv'
+        into an ordinary list.
+        """
+        for start, stop, value in self.get_steps():
+            for i in range(start, stop):
+                yield value
+
+    def __repr__(self):
+        if self.start == -sys.maxsize - 1:
+            start_s = "-inf"
+        else:
+            start_s = str(self.start)
+        if self.stop == sys.maxsize:
+            stop_s = "inf"
+        else:
+            stop_s = str(self.stop)
+        return "<%s object, type '%s', index range %s:%s, %d step(s)>" % (
+            self.__class__.__name__, self.typecode(), start_s,
+            stop_s, self.num_steps())
+
+    def typecode(self):
+        "Returns the typecode."
+        return self._typecode
+
+    def __len__(self):
+        """The length of a StepVector is defined by its index range, not by
+        the number of steps.
+        """
+        return self.stop - self.start
+
+    def num_steps(self):
+        """Returns the number of steps, i.e., the number of triples that get_steps
+        returns.
+        """
+        return self._swigobj.num_values()
+
+    def __eq__(self, other):
+        """StepVectors can be compared for equality. This is conceptually done
+        element for element, but, for performance, taking steps in one go.
+        """
+        if self.start_index() != other.start_index() or len(self) != len(other) or \
+                self.typecode() != other.typecode():
+            print("Mark A")
+            return False
+        selfsteps = self.get_steps()
+        othrsteps = other.get_steps()
+        selfstart, selfstop, selfval = next(selfsteps)
+        othrstart, othrstop, othrval = next(othrsteps)
+        while selfstop < self.start_index() + len(self) and \
+                othrstop < other.start_index() + len(other):
+            assert selfstart < othrstop and othrstart < selfstop
+            if not(selfval == othrval):
+                return False
+            if selfstop < othrstop:
+                selfstart, selfstop, selfval = next(selfsteps)
+            elif othrstop < selfstop:
+                othrstart, othrstop, othrval = next(othrsteps)
+            else:
+                selfstart, selfstop, selfval = next(selfsteps)
+                othrstart, othrstop, othrval = next(othrsteps)
+        return True
+
+    def __neq__(self, other):
+        return not (self == other)
+
+    def __reduce__(self):
+        if self.__class__ is not StepVector:
+            raise NotImplemented(
+                 "Attempting to pickle a subclass of StepVector without redefined __reduce__.")
+        return ( 
+            _StepVector_unpickle, 
+            (self.stop - self.start, self._typecode, self.start),
+            None,
+            None,
+            ((slice(start, stop), val) for start, stop, val in self.get_steps()))
+
+    def __iadd__(self, value):
+        self._swigobj.add_value(self.start, self.stop-1, value)
+        return self
+
+    def apply(self, func, start=None, stop=None):
+# TODO: check!
+        for stepstart, stepstop, value in self.get_steps(start, stop):
+            self[stepstart:stepstop] = func(value)
+
+def _StepVector_unpickle(length, typecode, start):
+    return StepVector.create(length, typecode, start)
+
+
+