EvoScientist 0.0.1.dev3__py3-none-any.whl → 0.0.1.dev4__py3-none-any.whl

EvoScientist/paths.py

@@ -18,9 +18,8 @@ def _env_path(key: str) -> Path | None:
     return _expand(value)
 
 
-STATE_ROOT = _env_path("EVOSCIENTIST_HOME") or (Path.cwd() / ".evoscientist")
-
-WORKSPACE_ROOT = _env_path("EVOSCIENTIST_WORKSPACE_DIR") or (STATE_ROOT / "workspace")
+# Workspace root: directly under cwd (no hidden .evoscientist layer)
+WORKSPACE_ROOT = _env_path("EVOSCIENTIST_WORKSPACE_DIR") or (Path.cwd() / "workspace")
 
 RUNS_DIR = _env_path("EVOSCIENTIST_RUNS_DIR") or (WORKSPACE_ROOT / "runs")
 MEMORY_DIR = _env_path("EVOSCIENTIST_MEMORY_DIR") or (WORKSPACE_ROOT / "memory")

EvoScientist/skills_manager.py

@@ -1,7 +1,7 @@
 """Skill installation and management for EvoScientist.
 
 This module provides functions for installing, listing, and uninstalling user skills.
-Skills are installed to USER_SKILLS_DIR (~/.evoscientist/workspace/skills/).
+Skills are installed to USER_SKILLS_DIR (./workspace/skills/).
 
 Supported installation sources:
 - Local directory paths
@@ -34,7 +34,6 @@ import subprocess
 import tempfile
 from dataclasses import dataclass
 from pathlib import Path
-from typing import Iterator
 
 import yaml
 

EvoScientist/stream/display.py

@@ -194,7 +194,7 @@ def _render_subagent_section(sa: 'SubAgentState', compact: bool = False) -> list
             pending.append(tc)
 
     succeeded = sum(1 for _, tr in completed if tr.get("success", True))
-    failed = len(completed) - succeeded
+    _ = len(completed) - succeeded  # failed count, unused for now
 
     # Build display name
     display_name = f"Cooking with {sa.name}"

EvoScientist/tools.py

@@ -16,7 +16,16 @@ from typing_extensions import Annotated
 
 load_dotenv(override=True)
 
-tavily_client = TavilyClient()
+# Lazy initialization - only create client when needed
+_tavily_client = None
+
+
+def _get_tavily_client() -> TavilyClient:
+    """Get or create the Tavily client (lazy initialization)."""
+    global _tavily_client
+    if _tavily_client is None:
+        _tavily_client = TavilyClient()
+    return _tavily_client
 
 
 async def fetch_webpage_content(url: str, timeout: float = 10.0) -> str:
@@ -67,7 +76,7 @@ async def tavily_search(
     """
 
     def _sync_search() -> dict:
-        return tavily_client.search(
+        return _get_tavily_client().search(
             query,
             max_results=max_results,
             topic=topic,

{evoscientist-0.0.1.dev3.dist-info → evoscientist-0.0.1.dev4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: EvoScientist
-Version: 0.0.1.dev3
+Version: 0.0.1.dev4
 Summary: EvoScientist: Towards Self-Evolving AI Scientists for End-to-End Scientific Discovery
 Author: Xi Zhang
 Maintainer: Xi Zhang
@@ -16,11 +16,13 @@ License-File: LICENSE
 Requires-Dist: deepagents>=0.3.6
 Requires-Dist: langchain>=1.2
 Requires-Dist: langchain-anthropic>=1.3
-Requires-Dist: anthropic>=0.76
+Requires-Dist: langchain-openai>=0.3
+Requires-Dist: langchain-nvidia-ai-endpoints>=0.3
 Requires-Dist: tavily-python>=0.7
 Requires-Dist: pyyaml>=6.0
 Requires-Dist: rich>=14.0
 Requires-Dist: prompt-toolkit>=3.0
+Requires-Dist: questionary>=2.0.1
 Requires-Dist: typer>=0.12
 Requires-Dist: python-dotenv>=1.0
 Requires-Dist: langgraph-cli[inmem]>=0.4
@@ -29,6 +31,8 @@ Requires-Dist: markdownify>=0.14
 Provides-Extra: dev
 Requires-Dist: pytest>=8.0; extra == "dev"
 Requires-Dist: pytest-cov>=5.0; extra == "dev"
+Requires-Dist: ruff>=0.5; extra == "dev"
+Requires-Dist: build>=1.0; extra == "dev"
 Dynamic: license-file
 
 <!-- Add logo here -->
@@ -61,6 +65,7 @@ Dynamic: license-file
 
 
 ## 📖 Contents
+- [🤖 Supported Models](#-supported-models)
 - [⛏️ Installation](#️-installation)
 - [🔑 API Key Configuration](#-api-key-configuration)
 - [⚡ Quick Start](#-quick-start)
@@ -73,6 +78,24 @@ Dynamic: license-file
 - [📦 Codebase Contributors](#-codebase-contributors)
 - [📜 License](#-license)
 
+## 🤖 Supported Models
+
+| Provider | Short Name | Model ID |
+|----------|-----------|----------|
+| Anthropic | `claude-sonnet-4-5` | `claude-sonnet-4-5-20250929` |
+| Anthropic | `claude-opus-4-5` | `claude-opus-4-5-20251101` |
+| Anthropic | `claude-3-5-sonnet` | `claude-3-5-sonnet-20241022` |
+| Anthropic | `claude-3-5-haiku` | `claude-3-5-haiku-20241022` |
+| OpenAI | `gpt-4o` | `gpt-4o` |
+| OpenAI | `gpt-4o-mini` | `gpt-4o-mini` |
+| OpenAI | `o1` | `o1` |
+| OpenAI | `o1-mini` | `o1-mini` |
+| NVIDIA | `glm4.7` | `z-ai/glm4.7` |
+| NVIDIA | `deepseek-v3.1` | `deepseek-ai/deepseek-v3.1-terminus` |
+| NVIDIA | `nemotron-nano` | `nvidia/nemotron-3-nano-30b-a3b` |
+
+You can also use any full model ID directly — the provider will be inferred automatically.
+
 ## ⛏️ Installation
 
 > [!TIP]  
@@ -110,18 +133,30 @@ uv pip install -e .
 
 ## 🔑 API Key Configuration
 
-EvoScientist requires API keys for LLM inference and web search. You can configure them in two ways:
+EvoScientist requires API keys for LLM inference and web search. You can configure them in three ways:
+
+### Option A: Interactive Setup Wizard (Recommended)
+
+```Shell
+EvoSci onboard
+```
+
+The wizard guides you through selecting a provider, entering API keys, choosing a model, and configuring workspace settings. Keys are validated automatically.
 
-### Option A: Environment Variables (Global)
+### Option B: Environment Variables (Global)
 
 Set keys directly in your terminal session. Add these to your shell profile (`~/.bashrc`, `~/.zshrc`, etc.) to persist across sessions:
 
 ```Shell
 export ANTHROPIC_API_KEY="your_anthropic_api_key_here"
 export TAVILY_API_KEY="your_tavily_api_key_here"
+
+# Optional: OpenAI or NVIDIA provider
+export OPENAI_API_KEY="your_openai_api_key_here"
+export NVIDIA_API_KEY="your_nvidia_api_key_here"
 ```
 
-### Option B: `.env` File (Project-level)
+### Option C: `.env` File (Project-level)
 
 Create a `.env` file in the project root. This keeps keys scoped to the project and out of your shell history:
 
@@ -141,7 +176,9 @@ TAVILY_API_KEY=your_tavily_api_key_here
 
 | Key | Required | Description |
 |-----|----------|-------------|
-| `ANTHROPIC_API_KEY` | Yes | Anthropic API key for Claude ([console.anthropic.com](https://console.anthropic.com/)) |
+| `ANTHROPIC_API_KEY` | For Anthropic | Anthropic API key for Claude ([console.anthropic.com](https://console.anthropic.com/)) |
+| `OPENAI_API_KEY` | For OpenAI | OpenAI API key for GPT models ([platform.openai.com](https://platform.openai.com/)) |
+| `NVIDIA_API_KEY` | For NVIDIA | NVIDIA API key for NIM models ([build.nvidia.com](https://build.nvidia.com/)) |
 | `TAVILY_API_KEY` | Yes | Tavily API key for web search ([app.tavily.com](https://app.tavily.com/)) |
 
 ## ⚡ Quick Start
@@ -161,10 +198,24 @@ EvoSci # or EvoScientist
 **Optional arguments:**
 
 ```
+--mode <mode>      Workspace mode: 'daemon' (persistent) or 'run' (isolated per-session)
 --workdir <path>   Override workspace directory for this session
 --use-cwd          Use current working directory as workspace
 --thread-id <id>   Resume a conversation thread
 --no-thinking      Disable thinking display
+-p, --prompt <q>   Single-shot mode: execute query and exit
+```
+
+**Configuration commands:**
+
+```Shell
+EvoSci onboard                # Interactive setup wizard
+EvoSci onboard --skip-validation  # Skip API key validation
+EvoSci config                 # List all configuration values
+EvoSci config get <key>       # Get a single value
+EvoSci config set <key> <val> # Set a single value
+EvoSci config reset --yes     # Reset to defaults
+EvoSci config path            # Show config file path
 ```
 
 **Interactive Commands:**
@@ -193,30 +244,25 @@ EvoSci # or EvoScientist
 
 ### Runtime Directories
 
-By default, the **workspace** is created under a hidden directory in the current
-project directory:
+By default, the **workspace** is created under the current directory:
 
 ```
-./.evoscientist/workspace/
-  memory/   # shared MEMORY.md
+./workspace/
+  memory/   # shared MEMORY.md (persistent across sessions)
   skills/   # user-installed skills
-  runs/     # per-thread workspaces
+  runs/     # per-session workspaces
 ```
 
 You can force workspace to be the current directory via `--use-cwd`.
 
-If you set `EVOSCIENTIST_HOME`, EvoScientist will place `workspace/` under that
-directory instead of the project root:
-
-Example with `EVOSCIENTIST_HOME=~/.evoscientist`:
+Override individual paths via environment variables:
 
-```
-~/.evoscientist/
-  workspace/
-    memory/
-    skills/
-    runs/
-```
+| Variable | Default | Description |
+|----------|---------|-------------|
+| `EVOSCIENTIST_WORKSPACE_DIR` | `./workspace` | Root workspace directory |
+| `EVOSCIENTIST_RUNS_DIR` | `./workspace/runs` | Per-session run directories |
+| `EVOSCIENTIST_MEMORY_DIR` | `./workspace/memory` | Shared memory storage |
+| `EVOSCIENTIST_SKILLS_DIR` | `./workspace/skills` | User-installed skills |
 
 ### Script Inference
 ```python

{evoscientist-0.0.1.dev3.dist-info → evoscientist-0.0.1.dev4.dist-info}/RECORD

@@ -1,16 +1,20 @@
-EvoScientist/EvoScientist.py,sha256=q5sB69kCLP1EwLLwGZFv_dikSfHoVOXO7jcDJ5BIKoM,5877
-EvoScientist/__init__.py,sha256=yj4YJUPldtq4xx8geadIoZ1n-BmgsM2Z_S2W8ld9S1k,702
+EvoScientist/EvoScientist.py,sha256=qhiCOOZvH6cmjLiKRMvfr74xJM7x-dZrrRoX9xrfLtQ,6053
+EvoScientist/__init__.py,sha256=BN8yi3iCIaq2gNfKORrI9OvMq49a2LrYWgEqW86vYLw,1120
 EvoScientist/__main__.py,sha256=P5USQ_BiiY0TBhtajGMuX5AMXlQ5joz1kvljHeacqmA,91
 EvoScientist/backends.py,sha256=3fIYRdOecL-KZx2hSNolsLO-2_rMzey-NpVMDMN701U,13355
-EvoScientist/cli.py,sha256=Xn8gXM9LPFakHvDME0em_7sVTkJPwMFSCkEQu0ilM5g,17028
+EvoScientist/cli.py,sha256=5y_yTBhLnXxI5JVFawcYbsbDEWMED_t2-X4LVbT24kY,25978
+EvoScientist/config.py,sha256=rXD_qlrTxP3HLH7H6DxvqKP4WwymyrzRyS8665igd6k,8649
 EvoScientist/memory.py,sha256=ZgITkiLezjAeo9z12UWRZurE1hZU7ehF-SAKrchPIEs,26475
 EvoScientist/middleware.py,sha256=hBHov8wFhe-AS-C84BFRDgikl5q8Xb9AMU4FfNxs9Jg,2620
-EvoScientist/paths.py,sha256=cXfSGzrNbZsHqcQaTUziFCN9xc1PQkxs9KkYa1BJyps,1356
+EvoScientist/onboard.py,sha256=x6THI4ryTMTBQBb90JRFhcZmPsc970yh77_VCuNqwm8,22200
+EvoScientist/paths.py,sha256=r3u632RJXfl8KPVhWBwVKPx9zFbvj1CZCIf7NeFBja4,1346
 EvoScientist/prompts.py,sha256=ni-qHoEoM703xtfD4J3IlvwAWPcW8gcNiCBVjRJoy3g,10692
-EvoScientist/skills_manager.py,sha256=TTex405Xzcu1uFoeGk8aCcOw3zgAHzSV5RPFcpputCw,12247
+EvoScientist/skills_manager.py,sha256=r1ZCnZkFij-uRwj09FmT67VFR5eRgd3ynzKWmykQJeI,12205
 EvoScientist/subagent.yaml,sha256=yoFlMJWitLlYuOe4_44EPG6vjpNP_txHBlqr-kNX2GM,6130
-EvoScientist/tools.py,sha256=dNXJuoe9rRWKNAl5TfEPkN-HeXyZxRx4lOc9x6Yay8I,6487
+EvoScientist/tools.py,sha256=7rCq3Sy74qAKEKnttvy9H7-LB8moXeYK0h7xRJnZJGk,6772
 EvoScientist/utils.py,sha256=GuWMRMkPHYgUOtoPZA0ErIt4FUBE4NMkz_OZluxYyRo,6801
+EvoScientist/llm/__init__.py,sha256=A3nQPKGP6qqh2K72_NZlUozNNwfD4jcEMyBerne9IGc,363
+EvoScientist/llm/models.py,sha256=3AhHG__OLbnQlgB3kIM3Ejf9kU2Cv6rDzc7uT5eKzYk,3335
 EvoScientist/skills/accelerate/SKILL.md,sha256=Ju_xLlGW3bZBWQO_8FWThkP155jE2atq9Ww0Zn8XwEs,8328
 EvoScientist/skills/accelerate/references/custom-plugins.md,sha256=Gy8c9dcKFV93ksrRKkZr5DFbeH_iHgGzbTK_N0aTwCA,11781
 EvoScientist/skills/accelerate/references/megatron-integration.md,sha256=ad7cw8eMGX3vqGUxQSVBuWpiQJDAr9eHqWfPhlEXJz0,11252
@@ -98,16 +102,16 @@ EvoScientist/skills/skill-creator/scripts/init_skill.py,sha256=C7olC5TKpMsrKLFdr
 EvoScientist/skills/skill-creator/scripts/package_skill.py,sha256=sx-8s-Ni1cUwjpklX_joPN46UT4GNpU5ZKZISUyhCTE,3288
 EvoScientist/skills/skill-creator/scripts/quick_validate.py,sha256=OBqy09H9XsMjcQFkEwY-_5nQ1IxBV0cIXGFRfpZ9u4c,3523
 EvoScientist/stream/__init__.py,sha256=_mdc88i75D3qlfuIBWpNm4-W5xMYIvM39vERgb53Bkk,1933
-EvoScientist/stream/display.py,sha256=esTQaoU_sLLKr-GuXYc6GD4X2S0QP-qvPdQ11bUCnRo,22538
+EvoScientist/stream/display.py,sha256=jCyohjfulwgyV-gOa5g5HXsepNLNLjdMdfQE9bt1-ZA,22565
 EvoScientist/stream/emitter.py,sha256=zmdn8vIXNgkgoWRtanrMtPN2GlsHmZtdFmoqCry3o_o,2978
 EvoScientist/stream/events.py,sha256=dSnHsDGl_HEBbfmQYv40YZVR-RDZPLZFsjlwmO46ch4,17251
 EvoScientist/stream/formatter.py,sha256=vyv89NGoTzxjsWt0teBXX38MZzFLhzMDBUcIH6-slDo,5532
 EvoScientist/stream/state.py,sha256=RX7JOBJLYXu7tdtDx71QR2U8JDHHTsB4GM877z9UKLM,12961
 EvoScientist/stream/tracker.py,sha256=cVWmiTCiwzOh84I7sAXXfgr_HXxOCCCzTvli-XJhthQ,3670
 EvoScientist/stream/utils.py,sha256=yQXhPIzOYzpNUUyDvkQDv1K-Yo0ePkXMtU7fHhRoG64,7718
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