ECOv003-L2T-STARS 1.0.1__py3-none-any.whl → 1.1.0__py3-none-any.whl

ECOv003_L2T_STARS/VNP43NRT/__init__.py

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+from .VNP43NRT import *

ECOv003_L2T_STARS/VNP43NRT/process_VNP43NRT.jl

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+using Glob
+using Dates
+using Rasters
+using DimensionalData.Dimensions.LookupArrays
+import ArchGDAL
+using VNP43NRT
+using Logging
+
+struct CustomLogger <: AbstractLogger
+    stream::IO
+    min_level::LogLevel
+end
+
+Logging.min_enabled_level(logger::CustomLogger) = logger.min_level
+
+function Logging.shouldlog(logger::CustomLogger, level, _module, group, id)
+    return level >= logger.min_level
+end
+
+function Logging.handle_message(logger::CustomLogger, level, message, _module, group, id, file, line; kwargs...)
+    t = Dates.format(now(), "yyyy-mm-dd HH:MM:SS")
+    println(logger.stream, "[$t $(uppercase(string(level)))] $message")
+end
+
+global_logger(CustomLogger(stdout, Logging.Info))
+
+SINUSOIDAL_CRS = WellKnownText("PROJCS[\"unknown\",GEOGCS[\"unknown\",DATUM[\"unknown\",SPHEROID[\"unknown\",6371007.181,0]],PRIMEM[\"Greenwich\",0],UNIT[\"degree\",0.0174532925199433,AUTHORITY[\"EPSG\",\"9122\"]]],PROJECTION[\"Sinusoidal\"],PARAMETER[\"longitude_of_center\",0],PARAMETER[\"false_easting\",0],PARAMETER[\"false_northing\",0],UNIT[\"metre\",1,AUTHORITY[\"EPSG\",\"9001\"]],AXIS[\"Easting\",EAST],AXIS[\"Northing\",NORTH]]")
+
+band = ARGS[1]
+@info "band: $(band)"
+h = parse(Int64, ARGS[2])
+v = parse(Int64, ARGS[3])
+@info "h: $(h) v: $(v)"
+tile_width_cells = parse(Int64, ARGS[4])
+@info "tile width cells: $(tile_width_cells)"
+start_date = Date(ARGS[5])
+@info "start date: $(start_date)"
+end_date = Date(ARGS[6])
+@info "end date: $(end_date)"
+reflectance_directory = ARGS[7]
+@info "reflectance directory: $(reflectance_directory)"
+solar_zenith_directory = ARGS[8]
+@info "solar zenith directory: $(solar_zenith_directory)"
+sensor_zenith_directory = ARGS[9]
+@info "sensor zenith directory: $(sensor_zenith_directory)"
+relative_azimuth_directory = ARGS[10]
+@info "relative azimuth directory: $(relative_azimuth_directory)"
+SZA_filename = ARGS[11]
+@info "solar zenith noon file: $(SZA_filename)"
+output_directory = ARGS[12]
+@info "output directory: $(output_directory)"
+
+reflectance_image_filenames = sort(glob("*.tif", reflectance_directory))
+
+dates = [start_date + Day(d - 1) for d in 1:((end_date - start_date).value + 1)]
+
+t = Ti(dates)
+
+x_dim, y_dim = sinusoidal_tile_dims(h, v, tile_width_cells)
+
+function load_timeseries(directory::String, variable::String, start_date::Date, end_date::Date, x_dim, y_dim)
+    @info "searching directory: $(directory)"
+    filenames = sort(glob("*.tif", directory))
+    images = []
+
+    dates = [start_date + Day(d - 1) for d in 1:((end_date - start_date).value + 1)]
+
+    for date in dates
+        date = Dates.format(date, dateformat"yyyy-mm-dd")
+        match = findfirst(x -> occursin(date, x), filenames)
+    
+        if match === nothing
+            @info "$(variable) image is not available on $(date)"
+            image = Raster(fill(NaN, tile_width_cells, tile_width_cells, 1), dims=(x_dim, y_dim, Band(1:1)), missingval=NaN)
+        else
+            filename = filenames[match]
+            @info "ingesting $(variable) image on $(date): $(filename)"
+            image = Raster(filename, dims=(x_dim, y_dim, Band(1:1)))
+        end
+    
+        push!(images, image)
+    end
+    
+    return images
+end
+
+reflectance_images = load_timeseries(reflectance_directory, band, start_date, end_date, x_dim, y_dim)
+
+function stack_timeseries(timeseries)
+    permutedims(hcat([vec(image) for image in timeseries]...), [1,2])
+end
+
+reflectance_stack = stack_timeseries(reflectance_images)
+
+solar_zenith_images = load_timeseries(solar_zenith_directory, band, start_date, end_date, x_dim, y_dim)
+solar_zenith_stack = stack_timeseries(solar_zenith_images)
+
+sensor_zenith_images = load_timeseries(sensor_zenith_directory, band, start_date, end_date, x_dim, y_dim)
+sensor_zenith_stack = stack_timeseries(sensor_zenith_images)
+
+relative_azimuth_images = load_timeseries(relative_azimuth_directory, band, start_date, end_date, x_dim, y_dim)
+relative_azimuth_stack = stack_timeseries(relative_azimuth_images)
+
+SZA = Raster(SZA_filename)
+SZA_flat = vec(SZA)
+
+# --- Handle missing values: replace `missing` with `NaN` in all stacks and SZA_flat ---
+
+function replace_missing_with_nan(arr)
+    return map(x -> ismissing(x) ? NaN : x, arr)
+end
+
+reflectance_stack = replace_missing_with_nan(reflectance_stack)
+solar_zenith_stack = replace_missing_with_nan(solar_zenith_stack)
+sensor_zenith_stack = replace_missing_with_nan(sensor_zenith_stack)
+relative_azimuth_stack = replace_missing_with_nan(relative_azimuth_stack)
+SZA_flat = replace_missing_with_nan(SZA_flat)
+
+results = NRT_BRDF_all(reflectance_stack, solar_zenith_stack, sensor_zenith_stack, relative_azimuth_stack, SZA_flat)
+
+mkpath(output_directory)
+
+date_format = dateformat"yyyy-mm-dd"
+date_stamp = Dates.format(end_date, date_format)
+
+WSA = Raster(reshape(results[:,1], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+WSA_filename = joinpath(output_directory, "$(date_stamp)_WSA.tif")
+@info "writing WSA: $(WSA_filename)"
+write(WSA_filename, WSA; force=true)
+
+BSA = Raster(reshape(results[:,2], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+BSA_filename = joinpath(output_directory, "$(date_stamp)_BSA.tif")
+@info "writing BSA: $(BSA_filename)"
+write(BSA_filename, BSA; force=true)
+
+NBAR = Raster(reshape(results[:,3], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+NBAR_filename = joinpath(output_directory, "$(date_stamp)_NBAR.tif")
+@info "writing NBAR: $(NBAR_filename)"
+write(NBAR_filename, NBAR; force=true)
+
+WSA_SE = Raster(reshape(results[:,4], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+WSA_SE_filename = joinpath(output_directory, "$(date_stamp)_WSA_SE.tif")
+@info "writing WSA_SE: $(WSA_SE_filename)"
+write(WSA_SE_filename, WSA_SE; force=true)
+
+BSA_SE = Raster(reshape(results[:,5], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+BSA_SE_filename = joinpath(output_directory, "$(date_stamp)_BSA_SE.tif")
+@info "writing BSA_SE: $(BSA_SE_filename)"
+write(BSA_SE_filename, BSA_SE; force=true)
+
+NBAR_SE = Raster(reshape(results[:,6], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+NBAR_SE_filename = joinpath(output_directory, "$(date_stamp)_NBAR_SE.tif")
+@info "writing NBAR_SE: $(NBAR_SE_filename)"
+write(NBAR_SE_filename, NBAR_SE; force=true)
+
+BRDF_SE = Raster(reshape(results[:,7], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+BRDF_SE_filename = joinpath(output_directory, "$(date_stamp)_BRDF_SE.tif")
+@info "writing BRDF_SE: $(BRDF_SE_filename)"
+write(BRDF_SE_filename, BRDF_SE; force=true)
+
+BRDF_R2 = Raster(reshape(results[:,8], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+BRDF_R2_filename = joinpath(output_directory, "$(date_stamp)_BRDF_R2.tif")
+@info "writing BRDF_R2: $(BRDF_R2_filename)"
+write(BRDF_R2_filename, BRDF_R2; force=true)
+
+count = Raster(reshape(results[:,9], (tile_width_cells, tile_width_cells)), dims=(x_dim, y_dim), missingval=NaN)
+count_filename = joinpath(output_directory, "$(date_stamp)_count.tif")
+@info "writing count: $(count_filename)"
+write(count_filename, count; force=true)

ECOv003_L2T_STARS/VNP43NRT/version.txt

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+0.1.0