DiNetxify 0.1.0__py3-none-any.whl
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- DiNetxify/__init__.py +39 -0
- DiNetxify/analysis.py +1530 -0
- DiNetxify/analysis_pipeline.py +386 -0
- DiNetxify/binomial.py +80 -0
- DiNetxify/comorbidity_strength.py +233 -0
- DiNetxify/conditional_logistic.py +542 -0
- DiNetxify/cox.py +641 -0
- DiNetxify/data/phecode_1.2/ICD-10-CM.npy +0 -0
- DiNetxify/data/phecode_1.2/ICD-10-WHO.npy +0 -0
- DiNetxify/data/phecode_1.2/ICD-9-WHO.npy +0 -0
- DiNetxify/data/phecode_1.2/level1_info.npy +0 -0
- DiNetxify/data/phecode_1.2/level2_info.npy +0 -0
- DiNetxify/data/phecode_1.2/phecode_info.csv +1867 -0
- DiNetxify/data/phecode_1.2/phecode_map_cm.csv +155882 -0
- DiNetxify/data/phecode_1.2/phecode_map_v1_2_icd10_beta.csv +9696 -0
- DiNetxify/data/phecode_1.2/phecode_map_who_icd10.csv +9528 -0
- DiNetxify/data/phecode_1.2/phecode_map_who_icd9.csv +20784 -0
- DiNetxify/data/phecode_VL_autism/phecode_process.py +24 -0
- DiNetxify/data_management.py +1407 -0
- DiNetxify/unconditional_logistic.py +322 -0
- DiNetxify/utility.py +1442 -0
- DiNetxify/utility_data_parallel.py +177 -0
- DiNetxify/utility_summary.py +117 -0
- DiNetxify/visualization.py +2561 -0
- dinetxify-0.1.0.dist-info/METADATA +809 -0
- dinetxify-0.1.0.dist-info/RECORD +29 -0
- dinetxify-0.1.0.dist-info/WHEEL +5 -0
- dinetxify-0.1.0.dist-info/licenses/LICENSE +674 -0
- dinetxify-0.1.0.dist-info/top_level.txt +1 -0
DiNetxify/__init__.py
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# -*- coding: utf-8 -*-
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"""
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Created on Mon Jul 22 23:48:05 2024
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@author: Can Hou/Haowen Liu - Biomedical Big data center of West China Hospital, Sichuan University
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"""
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from .data_management import DiseaseNetworkData
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from .analysis import (
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phewas,
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phewas_multipletests,
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comorbidity_strength,
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comorbidity_strength_multipletests,
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binomial_test,
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binomial_multipletests,
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comorbidity_network,
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comorbidity_multipletests,
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disease_trajectory,
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trajectory_multipletests
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)
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from .analysis_pipeline import disease_network_pipeline
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__version__ = '0.0.11'
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