DeepSDFStruct 1.7.2__py3-none-any.whl

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Files changed (165) hide show
  1. DeepSDFStruct/SDF.py +1734 -0
  2. DeepSDFStruct/__init__.py +66 -0
  3. DeepSDFStruct/deep_sdf/__init__.py +69 -0
  4. DeepSDFStruct/deep_sdf/create_screenshots_from_plyfiles.py +65 -0
  5. DeepSDFStruct/deep_sdf/data.py +258 -0
  6. DeepSDFStruct/deep_sdf/metrics/__init__.py +14 -0
  7. DeepSDFStruct/deep_sdf/metrics/mesh_to_analytical.py +24 -0
  8. DeepSDFStruct/deep_sdf/models.py +197 -0
  9. DeepSDFStruct/deep_sdf/networks/__init__.py +8 -0
  10. DeepSDFStruct/deep_sdf/networks/analytic_round_cross.py +105 -0
  11. DeepSDFStruct/deep_sdf/networks/deep_sdf_decoder.py +155 -0
  12. DeepSDFStruct/deep_sdf/networks/hierarchical_deep_sdf_decoder.py +139 -0
  13. DeepSDFStruct/deep_sdf/networks/hierarchical_positional_sdf_decoder.py +190 -0
  14. DeepSDFStruct/deep_sdf/networks/resnet_positional_sdf_decoder.py +108 -0
  15. DeepSDFStruct/deep_sdf/nn_utils.py +70 -0
  16. DeepSDFStruct/deep_sdf/plotting.py +143 -0
  17. DeepSDFStruct/deep_sdf/reconstruction.py +165 -0
  18. DeepSDFStruct/deep_sdf/training.py +840 -0
  19. DeepSDFStruct/deep_sdf/workspace.py +363 -0
  20. DeepSDFStruct/design_of_experiments.py +235 -0
  21. DeepSDFStruct/flexicubes/__init__.py +15 -0
  22. DeepSDFStruct/flexicubes/flexicubes.py +1005 -0
  23. DeepSDFStruct/flexicubes/tables.py +2338 -0
  24. DeepSDFStruct/flexisquares/__init__.py +15 -0
  25. DeepSDFStruct/flexisquares/flexisquares.py +967 -0
  26. DeepSDFStruct/flexisquares/tables.py +63 -0
  27. DeepSDFStruct/lattice_structure.py +254 -0
  28. DeepSDFStruct/local_shapes.py +226 -0
  29. DeepSDFStruct/mesh.py +1184 -0
  30. DeepSDFStruct/optimization.py +357 -0
  31. DeepSDFStruct/parametrization.py +215 -0
  32. DeepSDFStruct/pretrained_models.py +128 -0
  33. DeepSDFStruct/sampling.py +670 -0
  34. DeepSDFStruct/sdf_operations.py +990 -0
  35. DeepSDFStruct/sdf_primitives.py +1416 -0
  36. DeepSDFStruct/splinepy_unitcells/__init__.py +35 -0
  37. DeepSDFStruct/splinepy_unitcells/chi_3D.py +1617 -0
  38. DeepSDFStruct/splinepy_unitcells/cross_lattice.py +165 -0
  39. DeepSDFStruct/splinepy_unitcells/double_lattice_extruded.py +298 -0
  40. DeepSDFStruct/splinepy_unitcells/snappy_3d.py +544 -0
  41. DeepSDFStruct/torch_spline.py +446 -0
  42. DeepSDFStruct/trained_models/analytic_round_cross/LatentCodes/latest.pth +0 -0
  43. DeepSDFStruct/trained_models/analytic_round_cross/ModelParameters/latest.pth +0 -0
  44. DeepSDFStruct/trained_models/analytic_round_cross/OptimizerParameters/latest.pth +0 -0
  45. DeepSDFStruct/trained_models/analytic_round_cross/specs.json +45 -0
  46. DeepSDFStruct/trained_models/chi_and_cross/LatentCodes/latest.pth +0 -0
  47. DeepSDFStruct/trained_models/chi_and_cross/Logs.pth +0 -0
  48. DeepSDFStruct/trained_models/chi_and_cross/ModelParameters/latest.pth +0 -0
  49. DeepSDFStruct/trained_models/chi_and_cross/OptimizerParameters/latest.pth +0 -0
  50. DeepSDFStruct/trained_models/chi_and_cross/specs.json +76 -0
  51. DeepSDFStruct/trained_models/primitives/LatentCodes/latest.pth +0 -0
  52. DeepSDFStruct/trained_models/primitives/ModelParameters/latest.pth +0 -0
  53. DeepSDFStruct/trained_models/primitives/OptimizerParameters/latest.pth +0 -0
  54. DeepSDFStruct/trained_models/primitives/specs.json +46 -0
  55. DeepSDFStruct/trained_models/primitives_2d/LatentCodes/latest.pth +0 -0
  56. DeepSDFStruct/trained_models/primitives_2d/ModelParameters/latest.pth +0 -0
  57. DeepSDFStruct/trained_models/primitives_2d/OptimizerParameters/latest.pth +0 -0
  58. DeepSDFStruct/trained_models/primitives_2d/specs.json +46 -0
  59. DeepSDFStruct/trained_models/round_cross/LatentCodes/latest.pth +0 -0
  60. DeepSDFStruct/trained_models/round_cross/Logs.pth +0 -0
  61. DeepSDFStruct/trained_models/round_cross/ModelParameters/latest.pth +0 -0
  62. DeepSDFStruct/trained_models/round_cross/OptimizerParameters/latest.pth +0 -0
  63. DeepSDFStruct/trained_models/round_cross/specs.json +45 -0
  64. DeepSDFStruct/trained_models/test_experiment/LatentCodes/latent_code_data_map.json +106 -0
  65. DeepSDFStruct/trained_models/test_experiment/specs.json +45 -0
  66. DeepSDFStruct/trained_models/test_experiment/training_summary.json +10 -0
  67. DeepSDFStruct/trained_models/test_experiment_hierarchical/LatentCodes/latent_code_data_map.json +106 -0
  68. DeepSDFStruct/trained_models/test_experiment_hierarchical/specs.json +45 -0
  69. DeepSDFStruct/trained_models/test_experiment_hierarchical/training_summary.json +10 -0
  70. DeepSDFStruct/trained_models/test_experiment_homogenization/LatentCodes/latent_code_data_map.json +5006 -0
  71. DeepSDFStruct/trained_models/test_experiment_homogenization/LatentCodes/latest.pth +0 -0
  72. DeepSDFStruct/trained_models/test_experiment_homogenization/Logs.png +0 -0
  73. DeepSDFStruct/trained_models/test_experiment_homogenization/ModelParameters/latest.pth +0 -0
  74. DeepSDFStruct/trained_models/test_experiment_homogenization/OptimizerParameters/latest.pth +0 -0
  75. DeepSDFStruct/trained_models/test_experiment_homogenization/specs.json +83 -0
  76. DeepSDFStruct/trained_models/test_experiment_homogenization/training_summary.json +10 -0
  77. DeepSDFStruct/utils.py +96 -0
  78. DeepSDFStruct/visualization/latent_viewer.py +211 -0
  79. DeepSDFStruct/visualization/latent_viewer_cli.py +8 -0
  80. benchmarks/generate_sdf_showcase.py +622 -0
  81. benchmarks/sdf_from_mesh_benchmark.py +52 -0
  82. benchmarks/sdf_from_mesh_comparison.md +33 -0
  83. benchmarks/sdf_showcase/operations/boolean/difference_sphere_box.png +0 -0
  84. benchmarks/sdf_showcase/operations/boolean/union_sphere_box.png +0 -0
  85. benchmarks/sdf_showcase/operations/transformations/circular_array_sphere.png +0 -0
  86. benchmarks/sdf_showcase/operations/transformations/dilate_sphere.png +0 -0
  87. benchmarks/sdf_showcase/operations/transformations/mirror_sphere.png +0 -0
  88. benchmarks/sdf_showcase/operations/transformations/repeat_sphere.png +0 -0
  89. benchmarks/sdf_showcase/operations/transformations/revolve_circle.png +0 -0
  90. benchmarks/sdf_showcase/operations/transformations/shell_sphere.png +0 -0
  91. benchmarks/sdf_showcase/operations/transformations/twist_torus.png +0 -0
  92. benchmarks/sdf_showcase/primitives/2D/circle.png +0 -0
  93. benchmarks/sdf_showcase/primitives/2D/equilateral_triangle.png +0 -0
  94. benchmarks/sdf_showcase/primitives/2D/hexagon.png +0 -0
  95. benchmarks/sdf_showcase/primitives/2D/polygon_pentagon.png +0 -0
  96. benchmarks/sdf_showcase/primitives/2D/rectangle.png +0 -0
  97. benchmarks/sdf_showcase/primitives/2D/rounded_rectangle.png +0 -0
  98. benchmarks/sdf_showcase/primitives/3D/box.png +0 -0
  99. benchmarks/sdf_showcase/primitives/3D/capped_cone.png +0 -0
  100. benchmarks/sdf_showcase/primitives/3D/capped_cylinder.png +0 -0
  101. benchmarks/sdf_showcase/primitives/3D/capsule.png +0 -0
  102. benchmarks/sdf_showcase/primitives/3D/cone.png +0 -0
  103. benchmarks/sdf_showcase/primitives/3D/corner_spheres.png +0 -0
  104. benchmarks/sdf_showcase/primitives/3D/cross_ms.png +0 -0
  105. benchmarks/sdf_showcase/primitives/3D/cylinder.png +0 -0
  106. benchmarks/sdf_showcase/primitives/3D/dodecahedron.png +0 -0
  107. benchmarks/sdf_showcase/primitives/3D/ellipsoid.png +0 -0
  108. benchmarks/sdf_showcase/primitives/3D/icosahedron.png +0 -0
  109. benchmarks/sdf_showcase/primitives/3D/octahedron.png +0 -0
  110. benchmarks/sdf_showcase/primitives/3D/pyramid.png +0 -0
  111. benchmarks/sdf_showcase/primitives/3D/rounded_box.png +0 -0
  112. benchmarks/sdf_showcase/primitives/3D/rounded_cone.png +0 -0
  113. benchmarks/sdf_showcase/primitives/3D/rounded_cylinder.png +0 -0
  114. benchmarks/sdf_showcase/primitives/3D/sphere.png +0 -0
  115. benchmarks/sdf_showcase/primitives/3D/tetrahedron.png +0 -0
  116. benchmarks/sdf_showcase/primitives/3D/torus.png +0 -0
  117. benchmarks/sdf_showcase/primitives/3D/wireframe_box.png +0 -0
  118. deepsdfstruct-1.7.2.dist-info/METADATA +44 -0
  119. deepsdfstruct-1.7.2.dist-info/RECORD +165 -0
  120. deepsdfstruct-1.7.2.dist-info/WHEEL +5 -0
  121. deepsdfstruct-1.7.2.dist-info/licenses/LICENSE +208 -0
  122. deepsdfstruct-1.7.2.dist-info/licenses/NOTICE +67 -0
  123. deepsdfstruct-1.7.2.dist-info/scm_file_list.json +178 -0
  124. deepsdfstruct-1.7.2.dist-info/scm_version.json +8 -0
  125. deepsdfstruct-1.7.2.dist-info/top_level.txt +4 -0
  126. docs/Makefile +20 -0
  127. docs/api_reference.rst +6 -0
  128. docs/conf.py +60 -0
  129. docs/index.rst +136 -0
  130. docs/make.bat +35 -0
  131. docs/qr_code_github.png +0 -0
  132. docs/qr_code_paper.png +0 -0
  133. docs/readme_images/example_output_01.png +0 -0
  134. docs/readme_images/example_output_02.png +0 -0
  135. docs/readme_images/example_output_03.png +0 -0
  136. docs/readme_images/example_output_04.png +0 -0
  137. tests/data/chairs/1005.obj +282 -0
  138. tests/data/chairs/1024.obj +222 -0
  139. tests/data/chairs/README.md +1 -0
  140. tests/data/circular_balls_test_case.stl +0 -0
  141. tests/data/cone.stl +1794 -0
  142. tests/data/example_disconnectd_mesh.inp +1784 -0
  143. tests/data/example_line_mesh.vtk +0 -0
  144. tests/data/stanford_bunny.stl +0 -0
  145. tests/data/sweep_test_case.stl +0 -0
  146. tests/test_DOE.py +49 -0
  147. tests/test_elongate_sdf.py +195 -0
  148. tests/test_flexisquares.py +187 -0
  149. tests/test_generate_dataset.py +76 -0
  150. tests/test_lattice_evaluation.py +137 -0
  151. tests/test_mesh_export.py +137 -0
  152. tests/test_mesh_functions.py +49 -0
  153. tests/test_networks.py +71 -0
  154. tests/test_pretrained_models.py +40 -0
  155. tests/test_reconstruction.py +101 -0
  156. tests/test_sdf_from_mesh.py +52 -0
  157. tests/test_sdf_functions.py +117 -0
  158. tests/test_sdf_primitives.py +668 -0
  159. tests/test_sdf_trimesh_comparison.py +482 -0
  160. tests/test_splinepy_unitcells.py +64 -0
  161. tests/test_structural_optimization.py +178 -0
  162. tests/test_torch_spline.py +216 -0
  163. tests/test_train_model.py +110 -0
  164. tests/test_training_data_ids.py +41 -0
  165. tests/tmp_outputs/temp_file.txt +0 -0
DeepSDFStruct/trained_models/round_cross/specs.json ADDED
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+ {
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+ "Description" : "This experiment learns a shape representation for a simple microstructure using a big network.",
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+ "DataSource" : "data",
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+ "NetworkArch" : "deep_sdf_decoder",
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+ "TrainSplit": "data/splits/round_cross_only.json",
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+ "TestSplit": "data/splits/round_cross_only.json",
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+ "ReconstructionSplit": "",
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+ "NetworkSpecs" : {
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+ "dims" : [128, 128, 128, 128, 128, 128],
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+ "dropout" : [0, 1, 2, 3, 4, 5, 6, 7],
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+ "dropout_prob" : 0.2,
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+ "norm_layers" : [0, 1, 2, 3, 4, 5, 6, 7],
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+ "latent_in" : [2],
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+ "xyz_in_all" : false,
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+ "use_tanh" : false,
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+ "latent_dropout" : false,
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+ "weight_norm" : true,
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+ "geom_dimension": 3
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+ },
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+ "CodeLength" : 1,
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+ "NumEpochs" : 1000,
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+ "SnapshotFrequency" : 100,
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+ "AdditionalSnapshots" : [1,5],
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+ "LearningRateSchedule" : [
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+ {
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+ "Type" : "Step",
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+ "Initial" : 0.0005,
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+ "Interval" : 500,
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+ "Factor" : 0.5
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+ },
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+ {
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+ "Type" : "Step",
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+ "Initial" : 0.001,
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+ "Interval" : 500,
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+ "Factor" : 0.5
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+ }],
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+ "SamplesPerScene" : 16000,
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+ "ScenesPerBatch" : 10,
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+ "DataLoaderThreads" : 1,
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+ "ClampingDistance" : 0.1,
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+ "CodeRegularization" : true,
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+ "CodeRegularizationLambda" : 1e-4,
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+ "CodeBound" : 1.0
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+ }
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+
DeepSDFStruct/trained_models/test_experiment/LatentCodes/latent_code_data_map.json ADDED
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+ {
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+ "data_source": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd",
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+ "sdf_samples_subdir": "SdfSamples",
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+ "latent_codes": [
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+ {
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+ "latent_index": 0,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00000.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00000.npz"
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+ },
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+ {
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+ "latent_index": 1,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00001.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00001.npz"
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+ },
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+ {
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+ "latent_index": 2,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00002.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00002.npz"
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+ },
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+ {
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+ "latent_index": 3,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00003.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00003.npz"
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+ },
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+ {
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+ "latent_index": 4,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00004.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00004.npz"
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+ },
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+ {
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+ "latent_index": 5,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00005.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00005.npz"
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+ },
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+ {
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+ "latent_index": 6,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00006.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00006.npz"
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+ },
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+ {
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+ "latent_index": 7,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00007.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00007.npz"
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+ },
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+ {
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+ "latent_index": 8,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00008.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00008.npz"
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+ },
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00009.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00009.npz"
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+ },
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00010.npz",
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00011.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00011.npz"
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+ },
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00012.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00012.npz"
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+ },
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00013.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00013.npz"
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+ },
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00014.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00014.npz"
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+ },
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+ {
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+ "latent_index": 15,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00015.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00015.npz"
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+ },
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+ {
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+ "latent_index": 16,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00016.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00016.npz"
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+ },
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+ {
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+ "latent_index": 17,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00017.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00017.npz"
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+ },
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+ {
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+ "latent_index": 18,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00018.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00018.npz"
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+ },
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+ {
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+ "latent_index": 19,
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+ "relative_npz_filename": "microstructure/CrossLattice/CrossLattice_00019.npz",
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+ "npz_filename": "/usr2/mkofler/.cache/huggingface/hub/datasets--mkofler--lattice_structure_unit_cells/snapshots/b80339abc071df77ff81e8abc19ad4856d96ddbd/SdfSamples/microstructure/CrossLattice/CrossLattice_00019.npz"
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+ }
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+ ]
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+ }
DeepSDFStruct/trained_models/test_experiment/specs.json ADDED
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