DeepFabric 4.5.1__py3-none-any.whl → 4.7.0__py3-none-any.whl

deepfabric/graph.py

@@ -1,7 +1,10 @@
 import asyncio
+import hashlib
 import json
 import textwrap
+import uuid
 
+from datetime import datetime, timezone
 from typing import TYPE_CHECKING, Any
 
 from pydantic import BaseModel, ConfigDict, Field
@@ -69,6 +72,15 @@ class GraphConfig(BaseModel):
     )
 
 
+class GraphMetadata(BaseModel):
+    """Metadata for the entire graph for provenance tracking."""
+
+    provider: str = Field(..., description="LLM provider used (e.g., openai, ollama)")
+    model: str = Field(..., description="Model name used (e.g., gpt-4o)")
+    temperature: float = Field(..., description="Temperature setting used for generation")
+    created_at: str = Field(..., description="ISO 8601 timestamp when graph was created")
+
+
 class NodeModel(BaseModel):
     """Pydantic model for a node in the graph."""
 
@@ -84,6 +96,9 @@ class GraphModel(BaseModel):
 
     nodes: dict[int, NodeModel]
     root_id: int
+    metadata: GraphMetadata | None = Field(
+        default=None, description="Graph-level metadata for provenance tracking"
+    )
 
 
 class Node:
@@ -96,6 +111,14 @@ class Node:
         self.parents: list[Node] = []
         self.metadata: dict[str, Any] = metadata.copy() if metadata is not None else {}
 
+        # Auto-generate uuid if not present (stable node identification)
+        if "uuid" not in self.metadata:
+            self.metadata["uuid"] = str(uuid.uuid4())
+
+        # Auto-generate topic_hash if not present (duplicate detection via SHA256)
+        if "topic_hash" not in self.metadata:
+            self.metadata["topic_hash"] = hashlib.sha256(topic.encode("utf-8")).hexdigest()
+
     def to_pydantic(self) -> NodeModel:
         """Converts the runtime Node to its Pydantic model representation."""
         return NodeModel(
@@ -140,6 +163,9 @@ class Graph(TopicModel):
         # Progress reporter for streaming feedback (set by topic_manager)
         self.progress_reporter: ProgressReporter | None = None
 
+        # Store creation timestamp for provenance tracking
+        self.created_at: datetime = datetime.now(timezone.utc)
+
         trace(
             "graph_created",
             {
@@ -181,6 +207,12 @@ class Graph(TopicModel):
         return GraphModel(
             nodes={node_id: node.to_pydantic() for node_id, node in self.nodes.items()},
             root_id=self.root.id,
+            metadata=GraphMetadata(
+                provider=self.provider,
+                model=self.model_name,
+                temperature=self.temperature,
+                created_at=self.created_at.isoformat(),
+            ),
         )
 
     def to_json(self) -> str:
@@ -203,6 +235,12 @@ class Graph(TopicModel):
         graph = cls(**params)
         graph.nodes = {}
 
+        # Restore original creation timestamp if present in the loaded graph
+        if graph_model.metadata and graph_model.metadata.created_at:
+            # Handle 'Z' suffix for Python < 3.11 compatibility
+            created_at_str = graph_model.metadata.created_at.replace("Z", "+00:00")
+            graph.created_at = datetime.fromisoformat(created_at_str)
+
         # Create nodes
         for node_model in graph_model.nodes.values():
             node = Node(node_model.topic, node_model.id, node_model.metadata)

deepfabric/loader.py

@@ -0,0 +1,554 @@
+"""Dataset loading functionality for DeepFabric.
+
+This module provides the load_dataset function for loading datasets from:
+- Local text files (with line/paragraph/document sampling)
+- Local JSONL files
+- DeepFabric Cloud (via namespace/slug format)
+"""
+
+import json
+import re
+import warnings
+
+from http import HTTPStatus
+from pathlib import Path
+from typing import Any, Literal
+
+import httpx
+
+from .auth import DEFAULT_API_URL, get_stored_token
+from .dataset import Dataset, DatasetDict
+from .exceptions import LoaderError
+
+# Default cache directory for cloud datasets
+DEFAULT_CACHE_DIR = Path.home() / ".cache" / "deepfabric" / "datasets"
+
+
+def _detect_source(path: str) -> Literal["local", "cloud"]:
+    """Detect if path refers to local files or DeepFabric Cloud.
+
+    Args:
+        path: The path argument to load_dataset
+
+    Returns:
+        "local" for local file loading, "cloud" for cloud loading
+    """
+    # Known local format types
+    if path.lower() in ("text", "json", "jsonl", "csv"):
+        return "local"
+
+    # Cloud pattern: namespace/slug (alphanumeric with hyphens/underscores, single slash)
+    cloud_pattern = re.compile(r"^[a-zA-Z0-9_-]+/[a-zA-Z0-9_-]+$")
+    if cloud_pattern.match(path) and not Path(path).exists():
+        return "cloud"
+
+    # Default to local (file path)
+    return "local"
+
+
+def _read_text_file(file_path: str, sample_by: str) -> list[str]:
+    """Read text file with specified sampling strategy.
+
+    Args:
+        file_path: Path to the text file
+        sample_by: Sampling strategy - "line", "paragraph", or "document"
+
+    Returns:
+        List of text samples
+    """
+    with open(file_path, encoding="utf-8") as f:
+        content = f.read()
+
+    if sample_by == "document":
+        # Entire file as one sample
+        return [content.strip()] if content.strip() else []
+    if sample_by == "paragraph":
+        # Split on double newlines (paragraph boundaries)
+        paragraphs = re.split(r"\n\s*\n", content)
+        return [p.strip() for p in paragraphs if p.strip()]
+    # Default: line-by-line
+    return [line.strip() for line in content.split("\n") if line.strip()]
+
+
+def _normalize_data_files(
+    data_files: dict[str, str | list[str]] | str | list[str] | None,
+    data_dir: str | None,
+) -> dict[str, list[str]]:
+    """Normalize data_files to a consistent dict format.
+
+    Args:
+        data_files: Input data_files in various formats
+        data_dir: Optional directory prefix
+
+    Returns:
+        Dict mapping split names to lists of file paths
+    """
+    if data_files is None:
+        return {}
+
+    # Normalize to dict format
+    if isinstance(data_files, str):
+        files_dict: dict[str, list[str]] = {"train": [data_files]}
+    elif isinstance(data_files, list):
+        files_dict = {"train": data_files}
+    else:
+        files_dict = {k: [v] if isinstance(v, str) else list(v) for k, v in data_files.items()}
+
+    # Apply data_dir prefix if provided
+    if data_dir:
+        files_dict = {k: [str(Path(data_dir) / f) for f in v] for k, v in files_dict.items()}
+
+    return files_dict
+
+
+def _load_text_files(
+    data_files: dict[str, str | list[str]] | str | list[str] | None,
+    data_dir: str | None,
+    sample_by: str,
+) -> Dataset | DatasetDict:
+    """Load text files into Dataset.
+
+    Args:
+        data_files: File paths specification
+        data_dir: Optional directory prefix
+        sample_by: Sampling strategy
+
+    Returns:
+        Dataset or DatasetDict
+    """
+    files_dict = _normalize_data_files(data_files, data_dir)
+
+    if not files_dict:
+        raise LoaderError("No data files specified for text format")
+
+    # Load each split
+    datasets: dict[str, Dataset] = {}
+    for split_name, file_list in files_dict.items():
+        samples: list[dict[str, Any]] = []
+        for file_path in file_list:
+            if not Path(file_path).exists():
+                raise LoaderError(f"File not found: {file_path}")
+            texts = _read_text_file(file_path, sample_by)
+            samples.extend([{"text": t} for t in texts])
+        datasets[split_name] = Dataset(samples, {"source": "text", "split": split_name})
+
+    # Return single Dataset if only train split
+    if len(datasets) == 1 and "train" in datasets:
+        return datasets["train"]
+    return DatasetDict(datasets)
+
+
+def _load_json_file(file_path: str) -> list[dict[str, Any]]:
+    """Load a standard JSON file (array of objects).
+
+    Args:
+        file_path: Path to the JSON file
+
+    Returns:
+        List of sample dictionaries
+
+    Raises:
+        LoaderError: If the file is not valid JSON or not an array of objects
+    """
+    with open(file_path, encoding="utf-8") as f:
+        try:
+            data = json.load(f)
+        except json.JSONDecodeError as e:
+            raise LoaderError(
+                f"Invalid JSON in {file_path}: {e}",
+                context={"file": file_path},
+            ) from e
+
+    if isinstance(data, list):
+        # Validate all items are dicts
+        for i, item in enumerate(data):
+            if not isinstance(item, dict):
+                raise LoaderError(
+                    f"Expected array of objects in {file_path}, "
+                    f"but item at index {i} is {type(item).__name__}",
+                    context={"file": file_path, "index": i},
+                )
+        return data
+    if isinstance(data, dict):
+        # Single object - wrap in list
+        return [data]
+    raise LoaderError(
+        f"Expected JSON array or object in {file_path}, got {type(data).__name__}",
+        context={"file": file_path},
+    )
+
+
+def _load_jsonl_file(file_path: str) -> list[dict[str, Any]]:
+    """Load a JSONL file (one JSON object per line).
+
+    Args:
+        file_path: Path to the JSONL file
+
+    Returns:
+        List of sample dictionaries
+    """
+    samples: list[dict[str, Any]] = []
+    with open(file_path, encoding="utf-8") as f:
+        for line_num, line in enumerate(f, 1):
+            if not line.strip():
+                continue
+            try:
+                samples.append(json.loads(line))
+            except json.JSONDecodeError as e:
+                raise LoaderError(
+                    f"Invalid JSON on line {line_num} of {file_path}: {e}",
+                    context={"file": file_path, "line": line_num},
+                ) from e
+    return samples
+
+
+def _load_json_or_jsonl_file(file_path: str) -> list[dict[str, Any]]:
+    """Load a JSON or JSONL file based on extension.
+
+    Args:
+        file_path: Path to the file
+
+    Returns:
+        List of sample dictionaries
+    """
+    path = Path(file_path)
+    if path.suffix == ".jsonl":
+        return _load_jsonl_file(file_path)
+    # .json files are standard JSON (array or object)
+    return _load_json_file(file_path)
+
+
+def _load_jsonl_files(
+    data_files: dict[str, str | list[str]] | str | list[str] | None,
+    data_dir: str | None,
+) -> Dataset | DatasetDict:
+    """Load JSON/JSONL files into Dataset.
+
+    Args:
+        data_files: File paths specification
+        data_dir: Optional directory prefix
+
+    Returns:
+        Dataset or DatasetDict
+    """
+    files_dict = _normalize_data_files(data_files, data_dir)
+
+    if not files_dict:
+        raise LoaderError("No data files specified for json/jsonl format")
+
+    datasets: dict[str, Dataset] = {}
+    for split_name, file_list in files_dict.items():
+        samples: list[dict[str, Any]] = []
+        for file_path in file_list:
+            if not Path(file_path).exists():
+                raise LoaderError(f"File not found: {file_path}")
+            samples.extend(_load_json_or_jsonl_file(file_path))
+        datasets[split_name] = Dataset(samples, {"source": "json", "split": split_name})
+
+    if len(datasets) == 1 and "train" in datasets:
+        return datasets["train"]
+    return DatasetDict(datasets)
+
+
+def _load_from_directory(
+    data_dir: str,
+    sample_by: str,
+) -> Dataset | DatasetDict:
+    """Load all files from a directory.
+
+    Args:
+        data_dir: Directory path
+        sample_by: Sampling strategy for text files
+
+    Returns:
+        Dataset or DatasetDict
+    """
+    dir_path = Path(data_dir)
+    if not dir_path.is_dir():
+        raise LoaderError(f"Directory not found: {data_dir}")
+
+    # Find all supported files
+    text_files = list(dir_path.glob("*.txt"))
+    jsonl_files = list(dir_path.glob("*.jsonl"))
+    json_files = list(dir_path.glob("*.json"))
+
+    if not text_files and not jsonl_files and not json_files:
+        raise LoaderError(f"No .txt, .json, or .jsonl files found in {data_dir}")
+
+    samples: list[dict[str, Any]] = []
+
+    # Load text files
+    for file_path in text_files:
+        texts = _read_text_file(str(file_path), sample_by)
+        samples.extend([{"text": t} for t in texts])
+
+    # Load JSONL files (one JSON object per line)
+    for file_path in jsonl_files:
+        samples.extend(_load_jsonl_file(str(file_path)))
+
+    # Load JSON files (array of objects or single object)
+    for file_path in json_files:
+        samples.extend(_load_json_file(str(file_path)))
+
+    return Dataset(samples, {"source": "directory", "path": data_dir})
+
+
+def _get_cache_path(namespace: str, slug: str, cache_dir: Path) -> Path:
+    """Get cache file path for a cloud dataset.
+
+    Args:
+        namespace: Dataset namespace
+        slug: Dataset slug
+        cache_dir: Base cache directory
+
+    Returns:
+        Path to cached JSONL file
+    """
+    return cache_dir / f"{namespace}_{slug}.jsonl"
+
+
+def _load_from_cloud(
+    path: str,
+    split: str | None,
+    token: str | None,
+    api_url: str | None,
+    use_cache: bool,
+    streaming: bool,
+) -> Dataset:
+    """Load dataset from DeepFabric Cloud.
+
+    Args:
+        path: Dataset path in "namespace/slug" format
+        split: Optional split name (not used yet, reserved for future)
+        token: Optional auth token (uses stored token if not provided)
+        api_url: Optional API URL (uses default if not provided)
+        use_cache: Whether to use/store cached data
+        streaming: Whether to stream the dataset (not yet implemented on client side)
+
+    Returns:
+        Dataset loaded from cloud
+    """
+    # TODO: Implement streaming using Parquet shards endpoint
+    # Backend supports: GET /api/v1/datasets/{id}/parquet (manifest)
+    # and GET /api/v1/datasets/{id}/parquet/{filename} (shard with Range support)
+    if streaming:
+        warnings.warn(
+            "streaming=True is not yet implemented. "
+            "Falling back to loading entire dataset into memory. "
+            "For large datasets, this may cause memory issues.",
+            UserWarning,
+            stacklevel=3,
+        )
+
+    # TODO: Implement server-side split support
+    # For now, use dataset.split() after loading
+    if split:
+        warnings.warn(
+            f"split='{split}' is not yet implemented for cloud datasets. "
+            "Use dataset.split() after loading instead.",
+            UserWarning,
+            stacklevel=3,
+        )
+
+    # Parse namespace/slug
+    parts = path.split("/")
+    if len(parts) != 2:  # noqa: PLR2004
+        raise LoaderError(
+            f"Invalid cloud path format: {path}. Expected 'namespace/slug'.",
+            context={"path": path},
+        )
+    namespace, slug = parts
+
+    effective_token = token or get_stored_token()
+    effective_api_url = api_url or DEFAULT_API_URL
+
+    # Check cache first if enabled
+    cache_path = _get_cache_path(namespace, slug, DEFAULT_CACHE_DIR)
+    if use_cache and cache_path.exists():
+        return Dataset.from_jsonl(str(cache_path))
+
+    # Build request headers
+    headers: dict[str, str] = {}
+    if effective_token:
+        headers["Authorization"] = f"Bearer {effective_token}"
+
+    # Fetch from API
+    try:
+        with httpx.Client() as client:
+            response = client.get(
+                f"{effective_api_url}/api/v1/datasets/by-slug/{namespace}/{slug}/with-samples",
+                headers=headers,
+                timeout=120.0,
+            )
+            response.raise_for_status()
+            data = response.json()
+    except httpx.HTTPStatusError as e:
+        if e.response.status_code == HTTPStatus.NOT_FOUND:
+            raise LoaderError(
+                f"Dataset not found: {path}",
+                context={"namespace": namespace, "slug": slug},
+            ) from e
+        if e.response.status_code == HTTPStatus.UNAUTHORIZED:
+            raise LoaderError(
+                f"Authentication required for dataset: {path}. "
+                "Run 'deepfabric auth login' or pass token parameter.",
+                context={"namespace": namespace, "slug": slug},
+            ) from e
+        if e.response.status_code == HTTPStatus.FORBIDDEN:
+            raise LoaderError(
+                f"Access denied for dataset: {path}. "
+                "You may not have permission to access this private dataset.",
+                context={"namespace": namespace, "slug": slug},
+            ) from e
+        raise LoaderError(
+            f"Failed to load dataset from cloud: {e}",
+            context={"path": path, "status_code": e.response.status_code},
+        ) from e
+    except httpx.RequestError as e:
+        raise LoaderError(
+            f"Network error while loading dataset: {e}",
+            context={"path": path},
+        ) from e
+
+    # Extract samples from response
+    samples = data.get("samples", [])
+    if not samples:
+        raise LoaderError(
+            f"Dataset is empty: {path}",
+            context={"namespace": namespace, "slug": slug},
+        )
+
+    # Extract sample data - API may wrap in {"data": ...} format
+    sample_data: list[dict[str, Any]] = []
+    for sample in samples:
+        if isinstance(sample, dict) and "data" in sample:
+            sample_data.append(sample["data"])
+        else:
+            sample_data.append(sample)
+
+    dataset = Dataset(sample_data, {"source": "cloud", "path": path})
+
+    # Cache the dataset by default
+    if use_cache:
+        cache_path.parent.mkdir(parents=True, exist_ok=True)
+        dataset.to_jsonl(str(cache_path))
+
+    return dataset
+
+
+def load_dataset(
+    path: str,
+    *,
+    data_files: dict[str, str | list[str]] | str | list[str] | None = None,
+    data_dir: str | None = None,
+    split: str | None = None,
+    sample_by: Literal["line", "paragraph", "document"] = "line",
+    use_cache: bool = True,
+    token: str | None = None,
+    api_url: str | None = None,
+    streaming: bool = False,
+) -> Dataset | DatasetDict:
+    """Load a dataset from local files or DeepFabric Cloud.
+
+    Args:
+        path: Dataset path. Can be:
+            - "text" for local text files (requires data_files or data_dir)
+            - "json" or "jsonl" for local JSON/JSONL files
+            - "namespace/slug" for DeepFabric Cloud datasets
+            - Direct file path (e.g., "data.jsonl")
+        data_files: File paths for local loading. Can be:
+            - Single path: "train.txt"
+            - List of paths: ["file1.txt", "file2.txt"]
+            - Dict for splits: {"train": "train.txt", "test": "test.txt"}
+        data_dir: Directory containing data files, or directory to load from
+        split: Which split to load ("train", "test", "validation")
+        sample_by: How to sample text files:
+            - "line": Each line is a sample (default)
+            - "paragraph": Split on double newlines
+            - "document": Entire file is one sample
+        use_cache: Cache cloud datasets locally (default True).
+            Cache location: ~/.cache/deepfabric/datasets/
+        token: DeepFabric Cloud auth token (defaults to stored token)
+        api_url: DeepFabric API URL (defaults to production)
+        streaming: If True, return an iterable dataset (cloud only, not yet implemented)
+
+    Returns:
+        Dataset or DatasetDict depending on input structure
+
+    Raises:
+        LoaderError: If loading fails (file not found, invalid format, auth failure, etc.)
+
+    Examples:
+        >>> from deepfabric import load_dataset
+        >>>
+        >>> # Load from local text files
+        >>> ds = load_dataset("text", data_files={"train": "train.txt", "test": "test.txt"})
+        >>>
+        >>> # Load with paragraph sampling
+        >>> ds = load_dataset("text", data_files="my_text.txt", sample_by="paragraph")
+        >>>
+        >>> # Load from DeepFabric Cloud
+        >>> ds = load_dataset("username/my-dataset")
+        >>>
+        >>> # Access data
+        >>> messages = ds["messages"]
+        >>> first_sample = ds[0]
+        >>>
+        >>> # Split into train/test
+        >>> splits = ds.split(test_size=0.1, seed=42)
+    """
+    source = _detect_source(path)
+
+    if source == "cloud":
+        return _load_from_cloud(path, split, token, api_url, use_cache, streaming)
+
+    # Local loading
+    if path.lower() == "text":
+        if not data_files and not data_dir:
+            raise LoaderError(
+                "text format requires data_files or data_dir parameter",
+                context={"path": path},
+            )
+        if data_dir and not data_files:
+            dataset = _load_from_directory(data_dir, sample_by)
+        else:
+            dataset = _load_text_files(data_files, data_dir, sample_by)
+
+    elif path.lower() in ("json", "jsonl"):
+        if not data_files and not data_dir:
+            raise LoaderError(
+                f"{path} format requires data_files or data_dir parameter",
+                context={"path": path},
+            )
+        if data_dir and not data_files:
+            dataset = _load_from_directory(data_dir, sample_by)
+        else:
+            dataset = _load_jsonl_files(data_files, data_dir)
+
+    else:
+        # Assume it's a direct file path
+        file_path = Path(path)
+        if file_path.is_file():
+            if file_path.suffix in (".jsonl", ".json"):
+                dataset = _load_jsonl_files(str(file_path), None)
+            else:
+                dataset = _load_text_files(str(file_path), None, sample_by)
+        elif file_path.is_dir():
+            dataset = _load_from_directory(str(file_path), sample_by)
+        else:
+            raise LoaderError(
+                f"Path not found: {path}",
+                context={"path": path},
+            )
+
+    # Handle split parameter for DatasetDict
+    if split is not None and isinstance(dataset, DatasetDict):
+        if split not in dataset:
+            available = list(dataset.keys())
+            raise LoaderError(
+                f"Split '{split}' not found. Available splits: {available}",
+                context={"path": path, "split": split, "available": available},
+            )
+        return dataset[split]
+
+    return dataset

deepfabric/schemas.py

@@ -708,7 +708,7 @@ class FreeTextCoT(BaseModel):
     """Chain of Thought dataset in free-text format (GSM8K style)."""
 
     question: str = Field(description="The question or problem to solve")
-    chain_of_thought: str = Field(description="Natural language reasoning explanation")
+    cot: str = Field(description="Natural language reasoning explanation")
     final_answer: str = Field(description="The definitive answer to the question")
 
 
@@ -726,7 +726,7 @@ class HybridCoT(BaseModel):
     """Chain of Thought dataset with both free-text and structured reasoning."""
 
     question: str = Field(description="The question or problem to solve")
-    chain_of_thought: str = Field(description="Natural language reasoning explanation")
+    cot: str = Field(description="Natural language reasoning explanation")
     reasoning_trace: list[ReasoningStep] = Field(
         description="Structured reasoning steps", min_length=1
     )
@@ -780,7 +780,7 @@ class MathematicalAnswerMixin:
 
 # Capability Models for Composable Conversation Schema
 class ReasoningTrace(BaseModel):
-    """Reasoning capability - present when conversation_type='chain_of_thought'."""
+    """Reasoning capability - present when conversation_type='cot'."""
 
     style: Literal["freetext", "agent"] = Field(
         description="The reasoning style: freetext (natural language) or agent (structured step-by-step for tool-calling)"
@@ -929,7 +929,7 @@ class FormattedSample(BaseModel):
 # Unified conversation schema mapping
 CONVERSATION_SCHEMAS = {
     "basic": Conversation,
-    "chain_of_thought": Conversation,
+    "cot": Conversation,
 }
 
 
@@ -943,7 +943,7 @@ def get_conversation_schema(
     populated based on the configuration during generation.
 
     Args:
-        conversation_type: Type of conversation (basic, chain_of_thought)
+        conversation_type: Type of conversation (basic, cot)
 
     Returns:
         Conversation schema (unified for all types)

deepfabric/topic_manager.py

@@ -97,6 +97,8 @@ async def _process_graph_events(graph: Graph, debug: bool = False) -> dict | Non
                         get_tui().error(f"  [{idx}] Node ID: {node_id}, Attempts: {attempts}")
                         get_tui().error(f"      Error: {last_error}")
     except Exception as e:
+        # Stop TUI before printing error to ensure visibility
+        tui.stop_live()
         if debug:
             get_tui().error(f"Debug: Full traceback:\n{traceback.format_exc()}")
         get_tui().error(f"Graph build failed: {str(e)}")
@@ -147,6 +149,8 @@ async def _process_tree_events(tree: Tree, debug: bool = False) -> dict | None:
                         )
                         get_tui().error(f"      Error: {failure.get('error', 'Unknown error')}")
     except Exception as e:
+        # Stop TUI before printing error to ensure visibility
+        tui.stop_live()
         if debug:
             get_tui().error(f"Debug: Full traceback:\n{traceback.format_exc()}")
         get_tui().error(f"Tree build failed: {str(e)}")