D4CMPP2 0.4.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- D4CMPP2/_Data/AGENTS.md +24 -0
- D4CMPP2/_Data/Aqsoldb.csv +9291 -0
- D4CMPP2/_Data/BradleyMP.csv +3042 -0
- D4CMPP2/_Data/Lipophilicity.csv +1131 -0
- D4CMPP2/_Data/README.md +8 -0
- D4CMPP2/_Data/__init__.py +26 -0
- D4CMPP2/_Data/optical.csv +20237 -0
- D4CMPP2/_Data/test.csv +190 -0
- D4CMPP2/__init__.py +16 -0
- D4CMPP2/__main__.py +5 -0
- D4CMPP2/_main.py +500 -0
- D4CMPP2/cli.py +7 -0
- D4CMPP2/exceptions.py +53 -0
- D4CMPP2/grid_search.py +259 -0
- D4CMPP2/network_refer.yaml +160 -0
- D4CMPP2/networks/AFP_model.py +72 -0
- D4CMPP2/networks/AFPwithSolv_model.py +72 -0
- D4CMPP2/networks/DMPNN_model.py +90 -0
- D4CMPP2/networks/DMPNNwithSolv_model.py +89 -0
- D4CMPP2/networks/GAT_model.py +48 -0
- D4CMPP2/networks/GATwithSolv_model.py +63 -0
- D4CMPP2/networks/GCN_model.py +113 -0
- D4CMPP2/networks/GCNwithSolv_model.py +103 -0
- D4CMPP2/networks/GC_model.py +122 -0
- D4CMPP2/networks/ISATPM_model.py +14 -0
- D4CMPP2/networks/ISATPN_model.py +199 -0
- D4CMPP2/networks/ISAT_model.py +90 -0
- D4CMPP2/networks/MPNN_model.py +56 -0
- D4CMPP2/networks/MPNNwithSolv_model.py +72 -0
- D4CMPP2/networks/__init__.py +25 -0
- D4CMPP2/networks/base.py +250 -0
- D4CMPP2/networks/registry.py +187 -0
- D4CMPP2/networks/src/AFP.py +118 -0
- D4CMPP2/networks/src/BiDropout.py +29 -0
- D4CMPP2/networks/src/DMPNN.py +35 -0
- D4CMPP2/networks/src/GAT.py +69 -0
- D4CMPP2/networks/src/GC.py +85 -0
- D4CMPP2/networks/src/GCN.py +71 -0
- D4CMPP2/networks/src/ISAT.py +153 -0
- D4CMPP2/networks/src/Linear.py +49 -0
- D4CMPP2/networks/src/MPNN.py +56 -0
- D4CMPP2/networks/src/SolventLayer.py +62 -0
- D4CMPP2/networks/src/__init__.py +0 -0
- D4CMPP2/networks/src/distGCN.py +21 -0
- D4CMPP2/networks/src/pyg_hetero.py +24 -0
- D4CMPP2/optimize.py +472 -0
- D4CMPP2/src/Analyzer/ISAAnalyzer.py +458 -0
- D4CMPP2/src/Analyzer/ISAPNAnalyzer.py +366 -0
- D4CMPP2/src/Analyzer/ISAwSAnalyzer.py +117 -0
- D4CMPP2/src/Analyzer/MolAnalyzer.py +319 -0
- D4CMPP2/src/Analyzer/__init__.py +54 -0
- D4CMPP2/src/Analyzer/core.py +480 -0
- D4CMPP2/src/Analyzer/factory.py +166 -0
- D4CMPP2/src/Analyzer/interpretation.py +232 -0
- D4CMPP2/src/Analyzer/results.py +101 -0
- D4CMPP2/src/DataManager/Dataset/GraphDataset.py +314 -0
- D4CMPP2/src/DataManager/Dataset/ISAGraphDataset.py +384 -0
- D4CMPP2/src/DataManager/Dataset/__init__.py +0 -0
- D4CMPP2/src/DataManager/GraphGenerator/ISAGraphGenerator.py +223 -0
- D4CMPP2/src/DataManager/GraphGenerator/MolGraphGenerator.py +73 -0
- D4CMPP2/src/DataManager/GraphGenerator/__init__.py +14 -0
- D4CMPP2/src/DataManager/ISADataManager.py +67 -0
- D4CMPP2/src/DataManager/MolDataManager.py +735 -0
- D4CMPP2/src/DataManager/__init__.py +14 -0
- D4CMPP2/src/DataManager/contracts.py +179 -0
- D4CMPP2/src/NetworkManager/ISANetworkManager.py +12 -0
- D4CMPP2/src/NetworkManager/NetworkManager.py +520 -0
- D4CMPP2/src/NetworkManager/__init__.py +14 -0
- D4CMPP2/src/PostProcessor.py +160 -0
- D4CMPP2/src/TrainManager/ISATrainManager.py +26 -0
- D4CMPP2/src/TrainManager/TrainManager.py +254 -0
- D4CMPP2/src/TrainManager/__init__.py +14 -0
- D4CMPP2/src/TrainManager/callbacks.py +119 -0
- D4CMPP2/src/__init__.py +0 -0
- D4CMPP2/src/utils/PATH.py +246 -0
- D4CMPP2/src/utils/__init__.py +0 -0
- D4CMPP2/src/utils/argparser.py +56 -0
- D4CMPP2/src/utils/checkpointing.py +90 -0
- D4CMPP2/src/utils/config_resolution.py +123 -0
- D4CMPP2/src/utils/config_validation.py +370 -0
- D4CMPP2/src/utils/csv_validation.py +105 -0
- D4CMPP2/src/utils/data_quality.py +181 -0
- D4CMPP2/src/utils/featureizer.py +202 -0
- D4CMPP2/src/utils/functional_group.csv +169 -0
- D4CMPP2/src/utils/graph_cache.py +213 -0
- D4CMPP2/src/utils/leaderboard.py +212 -0
- D4CMPP2/src/utils/metrics.py +31 -0
- D4CMPP2/src/utils/module_loader.py +147 -0
- D4CMPP2/src/utils/output.py +80 -0
- D4CMPP2/src/utils/reproducibility.py +70 -0
- D4CMPP2/src/utils/run_manifest.py +175 -0
- D4CMPP2/src/utils/scaler.py +40 -0
- D4CMPP2/src/utils/sculptor.py +713 -0
- D4CMPP2/src/utils/splitting.py +250 -0
- D4CMPP2/src/utils/supportfile_saver.py +94 -0
- D4CMPP2/src/utils/tools.py +156 -0
- D4CMPP2/src/utils/transfer_learning.py +111 -0
- d4cmpp2-0.4.0.dist-info/METADATA +420 -0
- d4cmpp2-0.4.0.dist-info/RECORD +103 -0
- d4cmpp2-0.4.0.dist-info/WHEEL +5 -0
- d4cmpp2-0.4.0.dist-info/entry_points.txt +2 -0
- d4cmpp2-0.4.0.dist-info/licenses/LICENSE +21 -0
- d4cmpp2-0.4.0.dist-info/top_level.txt +1 -0
D4CMPP2/_Data/README.md
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# Reference
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- Solubility (Aqsoldb): https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/OVHAW8
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- Melting point (Bradley Double Plus Good Melting Point): https://figshare.com/articles/dataset/Jean_Claude_Bradley_Double_Plus_Good_Highly_Curated_and_Validated_Melting_Point_Dataset/1031638
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- Lipophilicity (logD7.4): https://github.com/nanxstats/logd74
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- optical (DB for chromophore) : https://www.nature.com/articles/s41597-020-00634-8#code-availability
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import pandas as pd
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import os
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def get_data(file):
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"""Get the data from the file
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Args:
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file: str, the file name
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returns:
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pd.DataFrame, the data in the file
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"""
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base_dir = os.path.dirname(os.path.abspath(__file__))
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file = file+'.csv' if not file.endswith('.csv') else file
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file = os.path.join(base_dir, file)
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if os.path.exists(file):
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return pd.read_csv(file)
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else:
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avilable_files = [f for f in os.listdir(base_dir) if f.endswith('.csv')]
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error = f"The file {file} does not exist"
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error += f"Tha available files are: {avilable_files}"
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raise Exception(error)
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