ChessAnalysisPipeline 0.0.4__py3-none-any.whl → 0.0.6__py3-none-any.whl

CHAP/tomo/reader.py

@@ -1,5 +1,7 @@
-#!/usr/bin/env python  
+'''Tomography command line reader'''
+
+# Local modules
+from CHAP.reader import main
 
 if __name__ == '__main__':
-    from CHAP.reader import main
     main()

CHAP/tomo/writer.py

@@ -1,5 +1,7 @@
-#!/usr/bin/env python  
+'''Tomography command line writer'''
+
+# Local modules
+from CHAP.reader import main
 
 if __name__ == '__main__':
-    from CHAP.writer import main
     main()

CHAP/writer.py

@@ -7,31 +7,23 @@ Description: generic Writer module
 
 # system modules
 import argparse
-import json
+from inspect import getfullargspec
 import logging
-import os
-import sys
+from sys import modules
 from time import time
 
-# local modules
-# from pipeline import PipelineObject
 
 class Writer():
-    """
-    Writer represent generic file writer
-    """
+    """Writer represent generic file writer"""
 
     def __init__(self):
-        """
-        Constructor of Writer class
-        """
+        """Constructor of Writer class"""
         self.__name__ = self.__class__.__name__
         self.logger = logging.getLogger(self.__name__)
         self.logger.propagate = False
 
     def write(self, data, filename, **_write_kwargs):
-        """
-        write API
+        """write API
 
         :param filename: Name of file to write to
         :param data: data to write to file
@@ -39,55 +31,69 @@ class Writer():
         """
 
         t0 = time()
-        self.logger.info(f'Executing "write" with filename={filename}, type(data)={type(data)}, kwargs={_write_kwargs}')
+        self.logger.info(f'Executing "write" with filename={filename}, '
+                         f'type(data)={type(data)}, kwargs={_write_kwargs}')
+
+        _valid_write_args = {}
+        allowed_args = getfullargspec(self._write).args \
+            + getfullargspec(self._write).kwonlyargs
+        for k, v in _write_kwargs.items():
+            if k in allowed_args:
+                _valid_write_args[k] = v
+            else:
+                self.logger.warning(f'Ignoring invalid arg to _write: {k}')
 
-        data = self._write(data, filename, **_write_kwargs)
+        data = self._write(data, filename, **_valid_write_args)
 
         self.logger.info(f'Finished "write" in {time()-t0:.3f} seconds\n')
 
-        return(data)
+        return data
 
     def _write(self, data, filename):
         with open(filename, 'a') as file:
             file.write(data)
-        return(data)
+        return data
+
 
 class OptionParser():
-        '''User based option parser'''
-        def __init__(self):
-            self.parser = argparse.ArgumentParser(prog='PROG')
-            self.parser.add_argument(
-                '--data', action='store',
-                dest='data', default='', help='Input data')
-            self.parser.add_argument(
-                '--filename', action='store',
-                        dest='filename', default='', help='Output file')
-            self.parser.add_argument(
-                '--writer', action='store',
-                dest='writer', default='Writer', help='Writer class name')
-            self.parser.add_argument(
-                '--log-level', choices=logging._nameToLevel.keys(),
+    """User based option parser"""
+    def __init__(self):
+        self.parser = argparse.ArgumentParser(prog='PROG')
+        self.parser.add_argument(
+            '--data', action='store',
+            dest='data', default='', help='Input data')
+        self.parser.add_argument(
+            '--filename', action='store',
+            dest='filename', default='', help='Output file')
+        self.parser.add_argument(
+            '--writer', action='store',
+            dest='writer', default='Writer', help='Writer class name')
+        self.parser.add_argument(
+            '--log-level', choices=logging._nameToLevel.keys(),
             dest='log_level', default='INFO', help='logging level')
 
+
 def main(opt_parser=OptionParser):
-    '''Main function'''
+    """Main function"""
 
-    optmgr  = opt_parser()
+    optmgr = opt_parser()
     opts = optmgr.parser.parse_args()
-    clsName = opts.writer
+    cls_name = opts.writer
     try:
-        writerCls = getattr(sys.modules[__name__],clsName)
-    except:
-        print(f'Unsupported writer {clsName}')
-        sys.exit(1)
+        writer_cls = getattr(modules[__name__], cls_name)
+    except AttributeError:
+        print(f'Unsupported writer {cls_name}')
+        raise
 
-    writer = writerCls()
+    writer = writer_cls()
     writer.logger.setLevel(getattr(logging, opts.log_level))
     log_handler = logging.StreamHandler()
-    log_handler.setFormatter(logging.Formatter('{name:20}: {message}', style='{'))
+    log_handler.setFormatter(logging.Formatter(
+        '{name:20}: {message}', style='{'))
     writer.logger.addHandler(log_handler)
     data = writer.write(opts.data, opts.filename)
-    print(f"Writer {writer} writes to {opts.filename}, data {data}")
+    print(f'Writer {writer} writes to {opts.filename}, data {data}')
+
 
 if __name__ == '__main__':
     main()

{ChessAnalysisPipeline-0.0.4.dist-info → ChessAnalysisPipeline-0.0.6.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ChessAnalysisPipeline
-Version: 0.0.4
+Version: 0.0.6
 Summary: CHESS analysis pipeline framework
 Home-page: https://github.com/CHESSComputing/ChessAnalysisPipeline
 Author: Keara Soloway, Rolf Verberg, Valentin Kuznetsov

ChessAnalysisPipeline-0.0.6.dist-info/RECORD

@@ -0,0 +1,52 @@
+CHAP/TaskManager.py,sha256=NEqg2jAq10kbScE18XtzY3liqkIdAtysaR-gMG5tBzs,6803
+CHAP/__init__.py,sha256=t3gMEDUIChA7W1XF2zJTisA4hoF2WijDO_EJLlV2EYo,99
+CHAP/pipeline.py,sha256=STv-hOPIXKCnzRPoR77Ra9f7VNBfXJNybcbhwOnN-mY,2020
+CHAP/processor.py,sha256=hANBXMdV7bLeIN2cgNfFSUD5QNhJNXOsCpo7Go8VbzU,3378
+CHAP/reader.py,sha256=jyvwfads4KPglGNKRT8RfASSJQ6GESQAnCYx0BVRuzw,3950
+CHAP/runner.py,sha256=BFxE4_RjOijTW14C8uX-aoPF8F_-W31w-FrB2fWI2LA,3869
+CHAP/server.py,sha256=JAh5a7ZPh_Vx7fm0uI_g2WHLVxLn8s1uwBX8oMJ3G9c,3648
+CHAP/writer.py,sha256=puNJ2Yi8PHPOVxOH9vIIsWo9KzseVjXVVnXieV0_Wd0,3038
+CHAP/common/__init__.py,sha256=cnkVDvaf3NhnmBAzwuUFpotYv9VWxOVhKwqE0qZLbNQ,991
+CHAP/common/processor.py,sha256=S_CSc5QmmHtkASHC61rF34_znWNKFCzOhLRWXDrrS6E,24447
+CHAP/common/reader.py,sha256=7p0ZfmOdW0PnV50gTLhLgRpbV0aWOqw4c9lMdr5nZfk,3941
+CHAP/common/writer.py,sha256=Mn4PbdJSAJau_9bWu-l7KNChNtSG_91oPAvr_I76mvg,3070
+CHAP/common/models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+CHAP/common/models/integration.py,sha256=wGwj_xo313IBPAKopwmVYf5umWZmdfcw9Bma2dXKwik,27105
+CHAP/common/models/map.py,sha256=L8V8nFVQU9cKGR97zWY9a7zGpd3xqUs1jzJhq_3c18Y,27132
+CHAP/common/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+CHAP/common/utils/fit.py,sha256=BJ9KqkL4F6z-4yYMRRrPTq05sw9CAR3ebCtjK0AJbxI,121894
+CHAP/common/utils/general.py,sha256=ikIRgnzE57TTF2FG0U-vv6hHwBi47Dg6odmtlXKZ6uQ,51967
+CHAP/common/utils/material.py,sha256=EPn8YZ_6tW4FvqEfmkrunm0j6k4-Rsz_OyZxBpUb7hc,11359
+CHAP/common/utils/scanparsers.py,sha256=hs3ThsfPuGsAjG-ZAMzjsr6Sfvl57rOzylbvEKPy0wM,44627
+CHAP/edd/__init__.py,sha256=0POOQcuL72QQJghdN9LfYHNZCHdAOjYaLYg2ebr_URo,262
+CHAP/edd/models.py,sha256=oBFTne7jAjAaO9Jc8dzBJSXXbfFS7pXqg_TkGNAaRwY,8508
+CHAP/edd/processor.py,sha256=JOeJEXTbNOd3M1Ah0OybkWyOE4WZfbC_ER9pksx6m7I,13698
+CHAP/edd/reader.py,sha256=O0KeZcqACsZ8ngrliPU6I3u8SeQT0Aq866jCTbruXqc,94
+CHAP/edd/writer.py,sha256=Y1CXWMRU87XeeDp4g4-sUgPP2UbCguYZUR_Cg5Ci6l8,94
+CHAP/inference/__init__.py,sha256=huci54T9WyoORENtAO-Wq7qdKfQvh8ocaRwOAoov2fo,129
+CHAP/inference/processor.py,sha256=TYYPtZ3YlZS1kgvGr6I_9RvSaR0kn9PKL98A3QwqeDI,2065
+CHAP/inference/reader.py,sha256=O0KeZcqACsZ8ngrliPU6I3u8SeQT0Aq866jCTbruXqc,94
+CHAP/inference/writer.py,sha256=Y1CXWMRU87XeeDp4g4-sUgPP2UbCguYZUR_Cg5Ci6l8,94
+CHAP/saxswaxs/__init__.py,sha256=aVB0vCzeQYr7sQfodr_qE9896aErCY-wcVf2hGoW-vs,196
+CHAP/saxswaxs/processor.py,sha256=6ytGpsK5u6tyUTzOJqAlcRdaimA4QfXZ6xpwGf2QMFo,97
+CHAP/saxswaxs/reader.py,sha256=O0KeZcqACsZ8ngrliPU6I3u8SeQT0Aq866jCTbruXqc,94
+CHAP/saxswaxs/writer.py,sha256=Y1CXWMRU87XeeDp4g4-sUgPP2UbCguYZUR_Cg5Ci6l8,94
+CHAP/sin2psi/__init__.py,sha256=tYTpc0_bhJ9zCwwaILtkekLR7R3SxzkynugY6D3djnE,243
+CHAP/sin2psi/processor.py,sha256=6ytGpsK5u6tyUTzOJqAlcRdaimA4QfXZ6xpwGf2QMFo,97
+CHAP/sin2psi/reader.py,sha256=O0KeZcqACsZ8ngrliPU6I3u8SeQT0Aq866jCTbruXqc,94
+CHAP/sin2psi/writer.py,sha256=Y1CXWMRU87XeeDp4g4-sUgPP2UbCguYZUR_Cg5Ci6l8,94
+CHAP/tomo/__init__.py,sha256=wFzlCBpY5n59ynOCQZly2oxdWqC0WHfRcS3Yjq07CME,87
+CHAP/tomo/models.py,sha256=y4W0ZIluPxk9tsjcjJ2T-1NeNYP4JbZ8WQ3NCyOfcQw,5148
+CHAP/tomo/processor.py,sha256=ZikF6-exUTH06_YSMnVhO_qy6ny3YmtYskQTwm7oJMA,104814
+CHAP/tomo/reader.py,sha256=D0pl8WV_4ht2dFGViVfEtsrHvDDGbBpDT5nQgbULzGk,122
+CHAP/tomo/writer.py,sha256=g4LnueLjHC-uAausIEXR5gdcMXP48ga0LKUBanTpCFM,122
+MLaaS/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+MLaaS/ktrain.py,sha256=SPDUOQgjBDSx7sI8vZNXog9orvSyKmzpe6TdGHol9qM,7467
+MLaaS/mnist_img.py,sha256=ppDtlo6yrNQy0oIhFZVOnLvHJrR3ZPZ3PjZTtJY8l0E,2738
+MLaaS/tfaas_client.py,sha256=zpZ201wwcQBW1XkzDakD9Kl_NRSESAUdbnN6k6Ey15A,14889
+ChessAnalysisPipeline-0.0.6.dist-info/LICENSE,sha256=GrJL25aZivxje_x-zBbeWASvdmgztxv8kBMhIP4XSMo,1075
+ChessAnalysisPipeline-0.0.6.dist-info/METADATA,sha256=HD80cdWwvEOwke0mnCt8aniO65dtUG5fZjNKv6TAKyM,1219
+ChessAnalysisPipeline-0.0.6.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
+ChessAnalysisPipeline-0.0.6.dist-info/entry_points.txt,sha256=w-KIKdUjmj5GCobrFC4_jexCsFB4yMXYjrsMWrhI6Co,42
+ChessAnalysisPipeline-0.0.6.dist-info/top_level.txt,sha256=BKhggOWLb9dD6oQm1RXrkJPnXm-zJxVzQef1iXYtt2k,11
+ChessAnalysisPipeline-0.0.6.dist-info/RECORD,,

ChessAnalysisPipeline-0.0.4.dist-info/RECORD

@@ -1,50 +0,0 @@
-CHAP/__init__.py,sha256=t3gMEDUIChA7W1XF2zJTisA4hoF2WijDO_EJLlV2EYo,99
-CHAP/pipeline.py,sha256=bmPFPlzmU7GvRa5KBd5zo6u_Rk9qtkG5tgiRvpfwcxg,2156
-CHAP/processor.py,sha256=j3GOvwQufL37gt2YKe2c8tZjEH2OtEUDRkgHpu26dck,4247
-CHAP/reader.py,sha256=12Xn78J06KJ5wzGnCZKSiak8irCtOVX2wtxV7eH3Pb0,3577
-CHAP/runner.py,sha256=MA0Q3KTAnPnw25i1L7XPs4ZkszfRfByD_qBshsokL2A,2412
-CHAP/writer.py,sha256=tDeQIEgTm-p8zH0g8EmqFTiGBFRM_A_Q9PyBjE1vaac,2759
-CHAP/common/__init__.py,sha256=cnkVDvaf3NhnmBAzwuUFpotYv9VWxOVhKwqE0qZLbNQ,991
-CHAP/common/processor.py,sha256=sEiSFqXhskrKVV6BDwGFwWpbAJ0aV1JXz2BO1l3oql4,24425
-CHAP/common/reader.py,sha256=DqKRLfG5PLf2aj039aV2FIN5ZmhR7XkZ6EyPDSLUZqY,3547
-CHAP/common/writer.py,sha256=HwMMCVldjQGb3HK9ysfdyfkUplnrdZjyqHnon0ne3DU,2910
-CHAP/common/models/__init__.py,sha256=wkCmQ08zciMzjbQVBjKZacSPUGICqTFcfJ3VaWYBtNY,106
-CHAP/common/models/integration.py,sha256=q18QpPtI7iLd1Asj3NnKbHmB5YIlLm9crKPmtLT37c0,25169
-CHAP/common/models/map.py,sha256=OXtXhohGrKrPCgkvxrweSDxnYpJf39KXxvvYsE5JBTo,25035
-CHAP/common/utils/__init__.py,sha256=lDyThufb9FjaqtUnZ7vDEyaF0r9S5Wo5Ty4qkjYNZRY,1497
-CHAP/common/utils/fit.py,sha256=-nOPfd6yUnUDNyLjLGJVxOp0ET4fKD-Bwh5C_bLx8bY,127303
-CHAP/common/utils/general.py,sha256=VkGFECXdbB2NicOt9iGhpIJPdvGPc6eHdtiaiqzDM1A,48178
-CHAP/common/utils/material.py,sha256=KQfORTqLbp8p9pWeSYD6mYzzpYncIEfbHVPiZ5E1PrA,10472
-CHAP/common/utils/scanparsers.py,sha256=ZxFgMQrD98vTjXbkqPXpA_xjWhL7Gk0cIBD0mvf67GQ,34386
-CHAP/edd/__init__.py,sha256=0POOQcuL72QQJghdN9LfYHNZCHdAOjYaLYg2ebr_URo,262
-CHAP/edd/models.py,sha256=E3gUBI0bgnR_GoLJE5XkY8bOWs7z44dcK0QaqqP0vXU,8448
-CHAP/edd/processor.py,sha256=AjI9CZyzBDgBNzKb72n1sc_dkH60LY0h5SyXTkTPbUo,13557
-CHAP/edd/reader.py,sha256=md3gt82kjNOR3mMjcsCfqbmWLuPhl6JA6Qk1ek9tItA,96
-CHAP/edd/writer.py,sha256=jQGikOjYx7-MURPqMkDqYw8sig2HauGulUlH1nf-jvY,96
-CHAP/inference/__init__.py,sha256=huci54T9WyoORENtAO-Wq7qdKfQvh8ocaRwOAoov2fo,129
-CHAP/inference/processor.py,sha256=Sl317ovfhAQPeThOe3Es6soHxH-ckusFiX9GPqxhfMw,2648
-CHAP/inference/reader.py,sha256=md3gt82kjNOR3mMjcsCfqbmWLuPhl6JA6Qk1ek9tItA,96
-CHAP/inference/writer.py,sha256=jQGikOjYx7-MURPqMkDqYw8sig2HauGulUlH1nf-jvY,96
-CHAP/saxswaxs/__init__.py,sha256=aVB0vCzeQYr7sQfodr_qE9896aErCY-wcVf2hGoW-vs,196
-CHAP/saxswaxs/processor.py,sha256=C8BXfAvPqoNR_Xpk9CmDOiWY3ZhW4E32SJ2jY3N5WgU,99
-CHAP/saxswaxs/reader.py,sha256=md3gt82kjNOR3mMjcsCfqbmWLuPhl6JA6Qk1ek9tItA,96
-CHAP/saxswaxs/writer.py,sha256=jQGikOjYx7-MURPqMkDqYw8sig2HauGulUlH1nf-jvY,96
-CHAP/sin2psi/__init__.py,sha256=tYTpc0_bhJ9zCwwaILtkekLR7R3SxzkynugY6D3djnE,243
-CHAP/sin2psi/processor.py,sha256=C8BXfAvPqoNR_Xpk9CmDOiWY3ZhW4E32SJ2jY3N5WgU,99
-CHAP/sin2psi/reader.py,sha256=md3gt82kjNOR3mMjcsCfqbmWLuPhl6JA6Qk1ek9tItA,96
-CHAP/sin2psi/writer.py,sha256=jQGikOjYx7-MURPqMkDqYw8sig2HauGulUlH1nf-jvY,96
-CHAP/tomo/__init__.py,sha256=cFq3uemguYhC3y2hKAO60Omoll5p8mWBHdCrCjBWfCA,150
-CHAP/tomo/models.py,sha256=8-sFRVfbMyy-R0p3HdNaJXH1K9YKDgb4JEXehPYuRns,4857
-CHAP/tomo/processor.py,sha256=_TILlIyM4-dy18CTmqJ0xF-MR0x3RKwppW1mt_dcqV0,97527
-CHAP/tomo/reader.py,sha256=md3gt82kjNOR3mMjcsCfqbmWLuPhl6JA6Qk1ek9tItA,96
-CHAP/tomo/writer.py,sha256=jQGikOjYx7-MURPqMkDqYw8sig2HauGulUlH1nf-jvY,96
-MLaaS/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-MLaaS/ktrain.py,sha256=SPDUOQgjBDSx7sI8vZNXog9orvSyKmzpe6TdGHol9qM,7467
-MLaaS/mnist_img.py,sha256=ppDtlo6yrNQy0oIhFZVOnLvHJrR3ZPZ3PjZTtJY8l0E,2738
-MLaaS/tfaas_client.py,sha256=zpZ201wwcQBW1XkzDakD9Kl_NRSESAUdbnN6k6Ey15A,14889
-ChessAnalysisPipeline-0.0.4.dist-info/LICENSE,sha256=GrJL25aZivxje_x-zBbeWASvdmgztxv8kBMhIP4XSMo,1075
-ChessAnalysisPipeline-0.0.4.dist-info/METADATA,sha256=KzNtqjPNZkHL92ukFXnF96tA2wv8xvEL5XDKdp-XafM,1219
-ChessAnalysisPipeline-0.0.4.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
-ChessAnalysisPipeline-0.0.4.dist-info/entry_points.txt,sha256=w-KIKdUjmj5GCobrFC4_jexCsFB4yMXYjrsMWrhI6Co,42
-ChessAnalysisPipeline-0.0.4.dist-info/top_level.txt,sha256=BKhggOWLb9dD6oQm1RXrkJPnXm-zJxVzQef1iXYtt2k,11
-ChessAnalysisPipeline-0.0.4.dist-info/RECORD,,