CUQIpy 1.3.0.post0.dev395__py3-none-any.whl → 1.3.0.post0.dev401__py3-none-any.whl

cuqi/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-09-19T16:37:46+0300",
+ "date": "2025-09-21T15:00:42+0200",
  "dirty": false,
  "error": null,
- "full-revisionid": "2cf72ec9af9af17dad4bb3870ee20d303376de24",
- "version": "1.3.0.post0.dev395"
+ "full-revisionid": "f08eb2ae4f6f5209d4a06a4e031bc61bb746ce01",
+ "version": "1.3.0.post0.dev401"
 }
 '''  # END VERSION_JSON
 

cuqi/experimental/mcmc/_sampler.py

@@ -203,13 +203,16 @@ class Sampler(ABC):
 
         self.set_state(state)
 
-    def sample(self, Ns, batch_size=0, sample_path='./CUQI_samples/') -> 'Sampler':
+    def sample(self, Ns, Nt=1, batch_size=0, sample_path='./CUQI_samples/') -> 'Sampler':
         """ Sample Ns samples from the target density.
 
         Parameters
         ----------
         Ns : int
             The number of samples to draw.
+        
+        Nt : int, optional, default=1
+            The thinning interval. If Nt >= 1, every Nt'th sample is stored. The larger Nt, the fewer samples are stored.
 
         batch_size : int, optional
             The batch size for saving samples to disk. If 0, no batching is used. If positive, samples are saved to disk in batches of the specified size.
@@ -233,7 +236,8 @@ class Sampler(ABC):
 
             # Store samples
             self._acc.append(acc)
-            self._samples.append(self.current_point)
+            if (Nt > 0) and ((idx + 1) % Nt == 0):
+                self._samples.append(self.current_point)
 
             # display acc rate at progress bar
             pbar.set_postfix_str(f"acc rate: {np.mean(self._acc[-1-idx:]):.2%}")
@@ -248,7 +252,7 @@ class Sampler(ABC):
         return self
     
 
-    def warmup(self, Nb, tune_freq=0.1) -> 'Sampler':
+    def warmup(self, Nb, Nt=1, tune_freq=0.1) -> 'Sampler':
         """ Warmup the sampler by drawing Nb samples.
 
         Parameters
@@ -256,6 +260,9 @@ class Sampler(ABC):
         Nb : int
             The number of samples to draw during warmup.
 
+        Nt : int, optional, default=1
+            The thinning interval. If Nt >= 1, every Nt'th sample is stored. The larger Nt, the fewer samples are stored.
+            
         tune_freq : float, optional
             The frequency of tuning. Tuning is performed every tune_freq*Nb samples.
 
@@ -278,7 +285,8 @@ class Sampler(ABC):
 
             # Store samples
             self._acc.append(acc)
-            self._samples.append(self.current_point)
+            if (Nt > 0) and ((idx + 1) % Nt == 0):
+                self._samples.append(self.current_point)
 
             # display acc rate at progress bar
             pbar.set_postfix_str(f"acc rate: {np.mean(self._acc[-1-idx:]):.2%}")

{cuqipy-1.3.0.post0.dev395.dist-info → cuqipy-1.3.0.post0.dev401.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: CUQIpy
-Version: 1.3.0.post0.dev395
+Version: 1.3.0.post0.dev401
 Summary: Computational Uncertainty Quantification for Inverse problems in Python
 Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
 License:                                  Apache License

{cuqipy-1.3.0.post0.dev395.dist-info → cuqipy-1.3.0.post0.dev401.dist-info}/RECORD

@@ -1,6 +1,6 @@
 cuqi/__init__.py,sha256=LsGilhl-hBLEn6Glt8S_l0OJzAA1sKit_rui8h-D-p0,488
 cuqi/_messages.py,sha256=fzEBrZT2kbmfecBBPm7spVu7yHdxGARQB4QzXhJbCJ0,415
-cuqi/_version.py,sha256=0Bl2L2hPa3CoCMdXl3Uvvm9V61FnZBKRh8f9MyEAouw,510
+cuqi/_version.py,sha256=SOLnTN23-4JLBv2uoi0W2XEn60t_evUNUHfiMB7jrSo,510
 cuqi/config.py,sha256=wcYvz19wkeKW2EKCGIKJiTpWt5kdaxyt4imyRkvtTRA,526
 cuqi/diagnostics.py,sha256=5OrbJeqpynqRXOe5MtOKKhe7EAVdOEpHIqHnlMW9G_c,3029
 cuqi/array/__init__.py,sha256=-EeiaiWGNsE3twRS4dD814BIlfxEsNkTCZUc5gjOXb0,30
@@ -54,7 +54,7 @@ cuqi/experimental/mcmc/_laplace_approximation.py,sha256=I5ZLtU0lA34YflRbqxKi5UgJ
 cuqi/experimental/mcmc/_mh.py,sha256=MXo0ahXP4KGFkaY4HtvcBE-TMQzsMlTmLKzSvpz7drU,2941
 cuqi/experimental/mcmc/_pcn.py,sha256=wqJBZLuRFSwxihaI53tumAg6AWVuceLMOmXssTetd1A,3374
 cuqi/experimental/mcmc/_rto.py,sha256=O_bBeQbaYy5im5LKAhwin3uRCJpyFPcKVDH8GxriXEY,17196
-cuqi/experimental/mcmc/_sampler.py,sha256=lClOyxTnHpjohb7hQcO9SSYMvOGxZMXWK_SrEsTTsvw,20570
+cuqi/experimental/mcmc/_sampler.py,sha256=7_a9i6A7AX3NNz7qK1jTsEYt6bFCUR5WK464KfH_Kvc,21034
 cuqi/geometry/__init__.py,sha256=Tz1WGzZBY-QGH3c0GiyKm9XHN8MGGcnU6TUHLZkzB3o,842
 cuqi/geometry/_geometry.py,sha256=W-oQTZPelVS7fN9qZj6bNBuh-yY0eqOHJ39UwB-WmQY,47562
 cuqi/implicitprior/__init__.py,sha256=6Fl4Lmld8ikg9sW9tReKRGTCJC6_WCTExHaYuIv34nM,323
@@ -93,8 +93,8 @@ cuqi/testproblem/_testproblem.py,sha256=EJWG_zXUtmo6GlHBZFqHlRpDC_48tE0XZEu0_C66
 cuqi/utilities/__init__.py,sha256=d5QXRzmI6EchS9T4b7eTezSisPWuWklO8ey4YBx9kI0,569
 cuqi/utilities/_get_python_variable_name.py,sha256=wxpCaj9f3ZtBNqlGmmuGiITgBaTsY-r94lUIlK6UAU4,2043
 cuqi/utilities/_utilities.py,sha256=R7BdNysrE36a4D729DvfrTisWY4paP5nfqdkQxSX3Mg,18431
-cuqipy-1.3.0.post0.dev395.dist-info/licenses/LICENSE,sha256=kJWRPrtRoQoZGXyyvu50Uc91X6_0XRaVfT0YZssicys,10799
-cuqipy-1.3.0.post0.dev395.dist-info/METADATA,sha256=grtqGn8cVeCBwMxwOyJ1OjN6I1tXqZfvUie8KZU9y_Q,18624
-cuqipy-1.3.0.post0.dev395.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-cuqipy-1.3.0.post0.dev395.dist-info/top_level.txt,sha256=AgmgMc6TKfPPqbjV0kvAoCBN334i_Lwwojc7HE3ZwD0,5
-cuqipy-1.3.0.post0.dev395.dist-info/RECORD,,
+cuqipy-1.3.0.post0.dev401.dist-info/licenses/LICENSE,sha256=kJWRPrtRoQoZGXyyvu50Uc91X6_0XRaVfT0YZssicys,10799
+cuqipy-1.3.0.post0.dev401.dist-info/METADATA,sha256=tSP-CHhdOy1toeu4080aq-6thVow3YK_LpNpT5q95T0,18624
+cuqipy-1.3.0.post0.dev401.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+cuqipy-1.3.0.post0.dev401.dist-info/top_level.txt,sha256=AgmgMc6TKfPPqbjV0kvAoCBN334i_Lwwojc7HE3ZwD0,5
+cuqipy-1.3.0.post0.dev401.dist-info/RECORD,,