CUQIpy 1.1.1.post0.dev5__py3-none-any.whl → 1.1.1.post0.dev15__py3-none-any.whl

{CUQIpy-1.1.1.post0.dev5.dist-info → CUQIpy-1.1.1.post0.dev15.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: CUQIpy
-Version: 1.1.1.post0.dev5
+Version: 1.1.1.post0.dev15
 Summary: Computational Uncertainty Quantification for Inverse problems in Python
 Maintainer-email: "Nicolai A. B. Riis" <nabr@dtu.dk>, "Jakob S. Jørgensen" <jakj@dtu.dk>, "Amal M. Alghamdi" <amaal@dtu.dk>, Chao Zhang <chaz@dtu.dk>
 License: Apache License

{CUQIpy-1.1.1.post0.dev5.dist-info → CUQIpy-1.1.1.post0.dev15.dist-info}/RECORD

@@ -1,6 +1,6 @@
 cuqi/__init__.py,sha256=LsGilhl-hBLEn6Glt8S_l0OJzAA1sKit_rui8h-D-p0,488
 cuqi/_messages.py,sha256=fzEBrZT2kbmfecBBPm7spVu7yHdxGARQB4QzXhJbCJ0,415
-cuqi/_version.py,sha256=GBlEQB0vnqLdJQ4FNiN2Ih7mYmB2x4_rO95Eva1C9oI,508
+cuqi/_version.py,sha256=1_s_4JUbxsSaB0mznz58FtvKQHhk4x-E2_f-nfee43Y,509
 cuqi/config.py,sha256=wcYvz19wkeKW2EKCGIKJiTpWt5kdaxyt4imyRkvtTRA,526
 cuqi/diagnostics.py,sha256=5OrbJeqpynqRXOe5MtOKKhe7EAVdOEpHIqHnlMW9G_c,3029
 cuqi/array/__init__.py,sha256=-EeiaiWGNsE3twRS4dD814BIlfxEsNkTCZUc5gjOXb0,30
@@ -39,17 +39,17 @@ cuqi/experimental/mcmc/_conjugate.py,sha256=VNPQkGity0mposcqxrx4UIeXm35EvJvZED4p
 cuqi/experimental/mcmc/_conjugate_approx.py,sha256=uEnY2ea9su5ivcNagyRAwpQP2gBY98sXU7N0y5hTADo,3653
 cuqi/experimental/mcmc/_cwmh.py,sha256=BQE7-4kbiC32TJ38rlVtfSQieoKBK5GDca3HCqHJ7zE,7135
 cuqi/experimental/mcmc/_direct.py,sha256=9pQS_2Qk2-ybt6m8WTfPoKetcxQ00WaTRN85-Z0FrBY,777
-cuqi/experimental/mcmc/_gibbs.py,sha256=IxZLDeRGZUhZMDCRyDoII67kcuClIeJoMoYKoICAaSU,10619
+cuqi/experimental/mcmc/_gibbs.py,sha256=6CCbasY8YJwDUnvHMKeV5pK0nr4T89BSklGaE-ZIP4I,10569
 cuqi/experimental/mcmc/_hmc.py,sha256=h63KT0jYq86H541hQzhHHzuLEn7vrRE_2r1o1mTEcZo,19261
 cuqi/experimental/mcmc/_langevin_algorithm.py,sha256=GKC_mlix3si_3J8E6I58ozh3ErB0XPmHMjV7sFyKLEQ,8200
 cuqi/experimental/mcmc/_laplace_approximation.py,sha256=rdiE3cMQFq6FLQcOQwPpuGIxrTAp3aoGPxMDSdeopV0,5688
 cuqi/experimental/mcmc/_mh.py,sha256=W5hOraHqfEW4_havtC9Ib2SinJtNV-NvxcOAENeTYUY,2841
 cuqi/experimental/mcmc/_pcn.py,sha256=wqJBZLuRFSwxihaI53tumAg6AWVuceLMOmXssTetd1A,3374
 cuqi/experimental/mcmc/_rto.py,sha256=OtzgiYCxDoTdXp7y4mkLa2upj74qadesoqHYpr11ZCg,10061
-cuqi/experimental/mcmc/_sampler.py,sha256=_ZE0kJZYlo8heolAA0rTgO1sQZ7uwV-lNqCYHxnihFk,20067
+cuqi/experimental/mcmc/_sampler.py,sha256=yzrbtBlqiajIHH151vocbD9SrHoCHj29wLP-IyrG3Mw,20017
 cuqi/experimental/mcmc/_utilities.py,sha256=kUzHbhIS3HYZRbneNBK41IogUYX5dS_bJxqEGm7TQBI,525
 cuqi/geometry/__init__.py,sha256=Tz1WGzZBY-QGH3c0GiyKm9XHN8MGGcnU6TUHLZkzB3o,842
-cuqi/geometry/_geometry.py,sha256=WYFC-4_VBTW73b2ldsnfGYKvdSiCE8plr89xTSmkadg,46804
+cuqi/geometry/_geometry.py,sha256=SDRZdiN2CIuS591lXxqgFoPWPIpwY-MHk75116QvdYY,46901
 cuqi/implicitprior/__init__.py,sha256=CaDQGYtmeFzN37vf3QUmKhcN9-H5lO66ZbK035k4qUw,246
 cuqi/implicitprior/_regularizedGMRF.py,sha256=IR9tKzNMoz-b0RKu6ahVgMx_lDNB3jZHVWFMQm6QqZk,6259
 cuqi/implicitprior/_regularizedGaussian.py,sha256=cQtrgzyJU2pwoK4ORGl1erKLE9VY5NqwZTiqiViDswA,12371
@@ -85,8 +85,8 @@ cuqi/testproblem/_testproblem.py,sha256=x769LwwRdJdzIiZkcQUGb_5-vynNTNALXWKato7s
 cuqi/utilities/__init__.py,sha256=H7xpJe2UinjZftKvE2JuXtTi4DqtkR6uIezStAXwfGg,428
 cuqi/utilities/_get_python_variable_name.py,sha256=QwlBVj2koJRA8s8pWd554p7-ElcI7HUwY32HknaR92E,1827
 cuqi/utilities/_utilities.py,sha256=Jc4knn80vLoA7kgw9FzXwKVFGaNBOXiA9kgvltZU3Ao,11777
-CUQIpy-1.1.1.post0.dev5.dist-info/LICENSE,sha256=kJWRPrtRoQoZGXyyvu50Uc91X6_0XRaVfT0YZssicys,10799
-CUQIpy-1.1.1.post0.dev5.dist-info/METADATA,sha256=PV1PVHglGQb4105G0vt1Px1jAmsP4PBQ91IvzVMiCFk,18389
-CUQIpy-1.1.1.post0.dev5.dist-info/WHEEL,sha256=UvcQYKBHoFqaQd6LKyqHw9fxEolWLQnlzP0h_LgJAfI,91
-CUQIpy-1.1.1.post0.dev5.dist-info/top_level.txt,sha256=AgmgMc6TKfPPqbjV0kvAoCBN334i_Lwwojc7HE3ZwD0,5
-CUQIpy-1.1.1.post0.dev5.dist-info/RECORD,,
+CUQIpy-1.1.1.post0.dev15.dist-info/LICENSE,sha256=kJWRPrtRoQoZGXyyvu50Uc91X6_0XRaVfT0YZssicys,10799
+CUQIpy-1.1.1.post0.dev15.dist-info/METADATA,sha256=fHSFpzxN_wWqO4GU01lw2wd37YZ15FoBGPbvBbZ0sXk,18390
+CUQIpy-1.1.1.post0.dev15.dist-info/WHEEL,sha256=uCRv0ZEik_232NlR4YDw4Pv3Ajt5bKvMH13NUU7hFuI,91
+CUQIpy-1.1.1.post0.dev15.dist-info/top_level.txt,sha256=AgmgMc6TKfPPqbjV0kvAoCBN334i_Lwwojc7HE3ZwD0,5
+CUQIpy-1.1.1.post0.dev15.dist-info/RECORD,,

{CUQIpy-1.1.1.post0.dev5.dist-info → CUQIpy-1.1.1.post0.dev15.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (74.0.0)
+Generator: setuptools (74.1.1)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

cuqi/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2024-08-31T21:02:04+0200",
+ "date": "2024-09-04T08:48:13+0200",
  "dirty": false,
  "error": null,
- "full-revisionid": "b38281138379969a9a8c4683ba3ecf8a88031939",
- "version": "1.1.1.post0.dev5"
+ "full-revisionid": "651202293e69ec5fa33c7da436d77d65adb562bd",
+ "version": "1.1.1.post0.dev15"
 }
 '''  # END VERSION_JSON
 

cuqi/experimental/mcmc/_gibbs.py

@@ -6,10 +6,10 @@ import numpy as np
 import warnings
 
 try:
-    from progressbar import progressbar
+    from tqdm import tqdm
 except ImportError:
-    def progressbar(iterable, **kwargs):
-        warnings.warn("Module mcmc: Progressbar not found. Install progressbar2 to get sampling progress.")
+    def tqdm(iterable, **kwargs):
+        warnings.warn("Module mcmc: tqdm not found. Install tqdm to get sampling progress.")
         return iterable
 
 # Not subclassed from Sampler as Gibbs handles multiple samplers and samples multiple parameters
@@ -152,13 +152,13 @@ class HybridGibbs:
 
     def sample(self, Ns) -> 'HybridGibbs':
         """ Sample from the joint distribution using Gibbs sampling """
-        for _ in progressbar(range(Ns)):
+        for _ in tqdm(range(Ns)):
             self.step()
             self._store_samples()
 
     def warmup(self, Nb) -> 'HybridGibbs':
         """ Warmup (tune) the Gibbs sampler """
-        for idx in progressbar(range(Nb)):
+        for idx in tqdm(range(Nb)):
             self.step()
             self.tune(idx)
             self._store_samples()

cuqi/experimental/mcmc/_sampler.py

@@ -7,10 +7,10 @@ import cuqi
 from cuqi.samples import Samples
 
 try:
-    from progressbar import progressbar
+    from tqdm import tqdm
 except ImportError:
-    def progressbar(iterable, **kwargs):
-        warnings.warn("Module mcmc: Progressbar not found. Install progressbar2 to get sampling progress.")
+    def tqdm(iterable, **kwargs):
+        warnings.warn("Module mcmc: tqdm not found. Install tqdm to get sampling progress.")
         return iterable
 
 class Sampler(ABC):
@@ -220,7 +220,7 @@ class Sampler(ABC):
         if hasattr(self, "_pre_sample"): self._pre_sample()
 
         # Draw samples
-        for _ in progressbar( range(Ns) ):
+        for _ in tqdm( range(Ns) ):
             
             # Perform one step of the sampler
             acc = self.step()
@@ -260,7 +260,7 @@ class Sampler(ABC):
         if hasattr(self, "_pre_warmup"): self._pre_warmup()
 
         # Draw warmup samples with tuning
-        for idx in progressbar(range(Nb)):
+        for idx in tqdm(range(Nb)):
 
             # Perform one step of the sampler
             acc = self.step()

cuqi/geometry/_geometry.py

@@ -395,6 +395,8 @@ class Continuous1D(Continuous):
         self._grid = self._create_dimension(value)
 
     def _plot(self, values, *args, **kwargs):
+        if self.par_dim==1 and "marker" not in kwargs.keys():
+            kwargs["marker"] = "o"
         p = plt.plot(self.grid, values, *args, **kwargs)
         self._plot_config()
         return p