BraTS 0.0.0.dev0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- brats/__init__.py +16 -0
- brats/constants.py +268 -0
- brats/core/__init__.py +0 -0
- brats/core/brats_algorithm.py +264 -0
- brats/core/docker.py +474 -0
- brats/core/inpainting_algorithms.py +155 -0
- brats/core/missing_mri_algorithms.py +185 -0
- brats/core/segmentation_algorithms.py +491 -0
- brats/core/singularity.py +268 -0
- brats/data/meta/adult_glioma_pre_and_post_treatment.yml +123 -0
- brats/data/meta/adult_glioma_pre_treatment.yml +64 -0
- brats/data/meta/africa.yml +185 -0
- brats/data/meta/goat.yml +84 -0
- brats/data/meta/inpainting.yml +163 -0
- brats/data/meta/meningioma.yml +96 -0
- brats/data/meta/meningioma_rt.yml +113 -0
- brats/data/meta/metastases.yml +94 -0
- brats/data/meta/missing_mri.yml +125 -0
- brats/data/meta/pediatric.yml +168 -0
- brats/data/parameters/brats23_africa_sparkunn.yml +63 -0
- brats/data/parameters/brats23_inpainting_domaso.yml +44 -0
- brats/data/parameters/brats23_missing_mri_onembyte.yml +5 -0
- brats/data/parameters/brats24_adult_glioma_mist.yml +6 -0
- brats/data/parameters/brats24_inpainting_smint.yml +37 -0
- brats/data/parameters/brats24_missing_mri_cgv.yml +72 -0
- brats/data/parameters/dummy.yml +0 -0
- brats/preprocessing.py +435 -0
- brats/utils/__init__.py +0 -0
- brats/utils/algorithm_config.py +102 -0
- brats/utils/data_handling.py +116 -0
- brats/utils/exceptions.py +25 -0
- brats/utils/logging.py +73 -0
- brats/utils/zenodo.py +217 -0
- brats-0.0.0.dev0.dist-info/METADATA +581 -0
- brats-0.0.0.dev0.dist-info/RECORD +37 -0
- brats-0.0.0.dev0.dist-info/WHEEL +4 -0
- brats-0.0.0.dev0.dist-info/licenses/LICENSE +201 -0
brats/data/meta/goat.yml
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constants:
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input_name_schema: &input_name_schema "BraTS-GLI-{id:05d}-000"
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challenge: &challenge "BraTS Generalizability Across Tumors (BraTS-GoAT)"
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challenge_manuscript:
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2025: &challenge_manuscript_2025 "N/A"
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2024: &challenge_manuscript_2024 "N/A"
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years:
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2025: &year_2025 2025
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2024: &year_2024 2024
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ranks:
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1st: &rank_1 1st
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2nd: &rank_2 2nd
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3rd: &rank_3 3rd
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algorithms:
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######## 2025 Algorithms ########
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BraTS25_1A:
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meta:
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authors: Meng-Yuan Chen, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2025
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rank: *rank_1
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year: *year_2025
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run_args:
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docker_image: brainles/brats25_goat_cmengynn:latest
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input_name_schema: *input_name_schema
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requires_root: true
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BraTS25_1B:
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meta:
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authors: To-Liang Hsu, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2025
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rank: *rank_1
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year: *year_2025
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run_args:
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docker_image: brainles/brats25_goat_cmuh_aic:latest
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input_name_schema: *input_name_schema
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BraTS25_1C:
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meta:
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authors: Vaidehi Satushe, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2025
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rank: *rank_1
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year: *year_2025
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run_args:
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docker_image: brainles/brats25_goat_satushe:latest
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input_name_schema: *input_name_schema
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requires_root: true
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BraTS25_1D: # This could not be tested due to a cuda version mismatch on the development machine
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meta:
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authors: Simone Bendazzoli, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2025
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rank: *rank_1
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year: *year_2025
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run_args:
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docker_image: brainles/brats25_goat_stockholmfederation:latest
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input_name_schema: *input_name_schema
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requires_root: true
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######## 2024 Algorithms ########
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BraTS24_1:
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meta:
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authors: Frank Miao, Shengjie Niu
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2024
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rank: *rank_1
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year: *year_2024
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run_args:
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docker_image: brainles/brats24_goat_polyu-ama-brain:latest
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input_name_schema: *input_name_schema
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requires_root: false
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parameters_file: false
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constants:
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input_name_schema: &input_name_schema "BraTS-GLI-{id:05d}-000"
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challenge: &challenge "Inpainting"
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challenge_manuscript:
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2024: &challenge_manuscript_2024 "https://arxiv.org/abs/2305.08992" # same as 2023
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2023: &challenge_manuscript_2023 "https://arxiv.org/abs/2305.08992"
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years:
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2025: &year_2025 2025
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2024: &year_2024 2024
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2023: &year_2023 2023
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ranks:
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1st: &rank_1 1st
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2nd: &rank_2 2nd
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3rd: &rank_3 3rd
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algorithms:
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######## 2025 Algorithms ########
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BraTS25_1A:
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meta:
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authors: Juexin Zhang, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: N/A
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rank: *rank_1
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year: *year_2025
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run_args:
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docker_image: brainles/brats25_inpainting_ying_weng:latest
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input_name_schema: *input_name_schema
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BraTS25_1B:
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meta:
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authors: André Ferreira, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: N/A
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rank: *rank_1
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year: *year_2025
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run_args:
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docker_image: brainles/brats25_inpainting_faking_it:latest
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input_name_schema: *input_name_schema
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requires_root: true
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BraTS25_2:
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meta:
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authors: Juhyung Ha, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: N/A
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rank: *rank_2
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year: *year_2025
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run_args:
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docker_image: brainles/brats25_inpainting_iu_brats:latest
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input_name_schema: *input_name_schema
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######## 2024 Algorithms ########
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BraTS24_1:
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meta:
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authors: Juexin Zhang, et al.
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paper: https://arxiv.org/abs/2507.18126
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2024
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rank: *rank_1
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year: *year_2024
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run_args:
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docker_image: brainles/brats24_inpainting_ying_weng:latest
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input_name_schema: *input_name_schema
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requires_root: false
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parameters_file: true
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cpu_compatible: true
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additional_files:
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record_id: "14230865"
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param_name: ["checkpoint_path"]
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BraTS24_2:
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meta:
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authors: André Ferreira, et al.
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paper: https://arxiv.org/html/2411.04630v2
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2024
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rank: *rank_2
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year: *year_2024
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run_args:
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docker_image: brainles/brats24_inpainting_faking_it:latest
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input_name_schema: *input_name_schema
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requires_root: false
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parameters_file: false
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shm_size: "4gb"
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BraTS24_3:
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meta:
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authors: Alicia Durrer, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2024
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rank: *rank_3
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year: *year_2024
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run_args:
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docker_image: brainles/brats24_inpainting_smint:latest
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input_name_schema: *input_name_schema
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requires_root: false
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parameters_file: true
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additional_files:
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record_id: "14231079"
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param_path: ["savedmodel395000.pt"]
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######## 2023 Algorithms ########
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BraTS23_1:
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meta:
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authors: Juexin Zhang, et al.
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paper: https://doi.org/10.1007/978-3-031-76163-8_21
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2023
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rank: *rank_1
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year: *year_2023
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run_args:
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docker_image: brainles/brats23_inpainting_ying_weng:latest
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input_name_schema: *input_name_schema
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requires_root: false
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parameters_file: true
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cpu_compatible: true
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additional_files:
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record_id: "13382922"
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param_name: ["checkpoint_path"]
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BraTS23_2:
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meta:
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authors: Alicia Durrer, et al.
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paper: https://doi.org/10.48550/arXiv.2402.17307
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2023
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rank: *rank_2
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year: *year_2023
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run_args:
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docker_image: brainles/brats23_inpainting_domaso
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input_name_schema: *input_name_schema
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requires_root: true
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parameters_file: true
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additional_files:
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record_id: "13383452"
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param_path: ["savedmodel2850000.pt"]
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BraTS23_3:
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meta:
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authors: Jiayu Huo, et al.
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paper: https://doi.org/10.1007/978-3-031-76163-8_1
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2023
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rank: *rank_3
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year: *year_2023
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run_args:
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docker_image: brainles/brats23_inpainting_medsegctrl
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input_name_schema: *input_name_schema
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requires_root: true
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parameters_file: true
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cpu_compatible: true
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additional_files:
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record_id: "13383287"
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param_name: ["weight_path"]
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param_path: ["epoch-19-step-197499.ckpt"]
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constants:
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input_name_schema_by_year:
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input_name_schema: &input_name_schema "BraTS-MEN-{id:05d}-000"
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challenge: &challenge "Meningioma Segmentation"
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challenge_manuscript:
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2025: &challenge_manuscript_2025 "https://arxiv.org/abs/2305.07642" # same as 2023
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2023: &challenge_manuscript_2023 "https://arxiv.org/abs/2305.07642"
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dataset_manuscript: &dataset_manuscript "https://www.nature.com/articles/s41597-024-03350-9"
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years:
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2025: &year_2025 2025
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2023: &year_2023 2023
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ranks:
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1st: &rank_1 1st
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2nd: &rank_2 2nd
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3rd: &rank_3 3rd
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algorithms:
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##### 2025 #####
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BraTS25_1:
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meta:
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authors: Yu Haitao, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2025
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rank: *rank_1
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year: *year_2025
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dataset_manuscript: *dataset_manuscript
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run_args:
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docker_image: brainles/brats25_men_qing:latest
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input_name_schema: *input_name_schema
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BraTS25_2:
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meta:
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authors: Mohammad Mahdi Danesh Pajouh, et al.
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paper: N/A
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challenge: *challenge
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challenge_manuscript: *challenge_manuscript_2025
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rank: *rank_2
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year: *year_2025
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dataset_manuscript: *dataset_manuscript
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run_args:
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docker_image: brainles/brats25_men_mmdp:latest
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input_name_schema: *input_name_schema
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##### 2023 #####
|
|
48
|
+
BraTS23_1:
|
|
49
|
+
meta:
|
|
50
|
+
authors: Andriy Myronenko, et al.
|
|
51
|
+
paper: N/A
|
|
52
|
+
challenge: *challenge
|
|
53
|
+
challenge_manuscript: *challenge_manuscript_2023
|
|
54
|
+
rank: *rank_1
|
|
55
|
+
year: *year_2023
|
|
56
|
+
dataset_manuscript: *dataset_manuscript
|
|
57
|
+
run_args:
|
|
58
|
+
docker_image: brainles/brats23_meningioma_nvauto:latest
|
|
59
|
+
input_name_schema: *input_name_schema
|
|
60
|
+
requires_root: true
|
|
61
|
+
parameters_file: true
|
|
62
|
+
shm_size: "32gb"
|
|
63
|
+
|
|
64
|
+
BraTS23_2:
|
|
65
|
+
meta:
|
|
66
|
+
authors: Ziyan Huang, et al.
|
|
67
|
+
paper: https://doi.org/10.1007/978-3-031-76163-8_13
|
|
68
|
+
challenge: *challenge
|
|
69
|
+
challenge_manuscript: *challenge_manuscript_2023
|
|
70
|
+
rank: *rank_2
|
|
71
|
+
year: *year_2023
|
|
72
|
+
dataset_manuscript: *dataset_manuscript
|
|
73
|
+
run_args:
|
|
74
|
+
docker_image: brainles/brats23_meningioma_blackbean:latest
|
|
75
|
+
input_name_schema: *input_name_schema
|
|
76
|
+
requires_root: true
|
|
77
|
+
parameters_file: true
|
|
78
|
+
shm_size: "4gb"
|
|
79
|
+
cpu_compatible: true
|
|
80
|
+
|
|
81
|
+
BraTS23_3:
|
|
82
|
+
meta:
|
|
83
|
+
authors: Daniel Capellán-Martín et al.
|
|
84
|
+
paper: https://api.semanticscholar.org/CorpusID:272599903
|
|
85
|
+
challenge: *challenge
|
|
86
|
+
challenge_manuscript: *challenge_manuscript_2023
|
|
87
|
+
rank: *rank_3
|
|
88
|
+
year: *year_2023
|
|
89
|
+
dataset_manuscript: *dataset_manuscript
|
|
90
|
+
run_args:
|
|
91
|
+
docker_image: brainles/brats23_meningioma_cnmc_pmi2023:latest
|
|
92
|
+
input_name_schema: *input_name_schema
|
|
93
|
+
requires_root: true
|
|
94
|
+
parameters_file: false
|
|
95
|
+
shm_size: "2gb"
|
|
96
|
+
|
|
@@ -0,0 +1,113 @@
|
|
|
1
|
+
constants:
|
|
2
|
+
input_name_schema_by_year:
|
|
3
|
+
input_name_schema: &input_name_schema "BraTS-MEN-RT-{id:04d}-1"
|
|
4
|
+
challenge: &challenge "Meningioma Segmentation"
|
|
5
|
+
challenge_manuscript:
|
|
6
|
+
2025: &challenge_manuscript_2025 "https://arxiv.org/abs/2405.18383" # same as 2024
|
|
7
|
+
2024: &challenge_manuscript_2024 "https://arxiv.org/abs/2405.18383"
|
|
8
|
+
dataset_manuscript: &dataset_manuscript "https://www.nature.com/articles/s41597-024-03350-9"
|
|
9
|
+
years:
|
|
10
|
+
2025: &year_2025 2025
|
|
11
|
+
2024: &year_2024 2024
|
|
12
|
+
ranks:
|
|
13
|
+
1st: &rank_1 1st
|
|
14
|
+
2nd: &rank_2 2nd
|
|
15
|
+
3rd: &rank_3 3rd
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
algorithms:
|
|
19
|
+
|
|
20
|
+
##### 2024 #####
|
|
21
|
+
BraTS25_1:
|
|
22
|
+
meta:
|
|
23
|
+
authors: Valeria Abramova, et al.
|
|
24
|
+
paper: N/A
|
|
25
|
+
challenge: *challenge
|
|
26
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
27
|
+
rank: *rank_1
|
|
28
|
+
year: *year_2025
|
|
29
|
+
run_args:
|
|
30
|
+
docker_image: brainles/brats25_menrt_nic-vicorob:latest
|
|
31
|
+
input_name_schema: *input_name_schema
|
|
32
|
+
requires_root: true
|
|
33
|
+
subject_modality_separator: "_"
|
|
34
|
+
|
|
35
|
+
BraTS25_2:
|
|
36
|
+
meta:
|
|
37
|
+
authors: Sanskriti Srivastava, et al.
|
|
38
|
+
paper: N/A
|
|
39
|
+
challenge: *challenge
|
|
40
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
41
|
+
rank: *rank_2
|
|
42
|
+
year: *year_2025
|
|
43
|
+
run_args:
|
|
44
|
+
docker_image: brainles/brats25_menrt_medimg_sk:latest
|
|
45
|
+
input_name_schema: *input_name_schema
|
|
46
|
+
cpu_compatible: true # ~ 1 min/subject
|
|
47
|
+
subject_modality_separator: "_"
|
|
48
|
+
|
|
49
|
+
BraTS25_3:
|
|
50
|
+
meta:
|
|
51
|
+
authors: Nima Sadeghzadeh, et al.
|
|
52
|
+
paper: N/A
|
|
53
|
+
challenge: *challenge
|
|
54
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
55
|
+
rank: *rank_3
|
|
56
|
+
year: *year_2025
|
|
57
|
+
run_args:
|
|
58
|
+
docker_image: brainles/brats25_menrt_neurotech:latest
|
|
59
|
+
input_name_schema: *input_name_schema
|
|
60
|
+
cpu_compatible: true # ~ 7 min/subject
|
|
61
|
+
requires_root: true
|
|
62
|
+
|
|
63
|
+
##### 2024 #####
|
|
64
|
+
BraTS24_1:
|
|
65
|
+
meta:
|
|
66
|
+
authors: Valeria Abramova
|
|
67
|
+
paper: N/A
|
|
68
|
+
challenge: *challenge
|
|
69
|
+
challenge_manuscript: *challenge_manuscript_2024
|
|
70
|
+
rank: *rank_1
|
|
71
|
+
year: *year_2024
|
|
72
|
+
run_args:
|
|
73
|
+
docker_image: brainles/brats24_meningioma_nic_vicorob
|
|
74
|
+
input_name_schema: *input_name_schema
|
|
75
|
+
requires_root: false
|
|
76
|
+
parameters_file: true
|
|
77
|
+
shm_size: "16gb"
|
|
78
|
+
subject_modality_separator: "_"
|
|
79
|
+
|
|
80
|
+
BraTS24_2:
|
|
81
|
+
meta:
|
|
82
|
+
authors: Mehdi Astaraki
|
|
83
|
+
paper: N/A
|
|
84
|
+
challenge: *challenge
|
|
85
|
+
challenge_manuscript: *challenge_manuscript_2024
|
|
86
|
+
rank: *rank_2
|
|
87
|
+
year: *year_2024
|
|
88
|
+
run_args:
|
|
89
|
+
docker_image: brainles/brats24_meningioma_astaraki
|
|
90
|
+
input_name_schema: *input_name_schema
|
|
91
|
+
requires_root: false
|
|
92
|
+
parameters_file: true
|
|
93
|
+
shm_size: "2gb"
|
|
94
|
+
|
|
95
|
+
BraTS24_3:
|
|
96
|
+
meta:
|
|
97
|
+
authors: Andre Ferreira, et al.
|
|
98
|
+
paper: https://arxiv.org/html/2411.04632v1
|
|
99
|
+
challenge: *challenge
|
|
100
|
+
challenge_manuscript: *challenge_manuscript_2024
|
|
101
|
+
rank: *rank_3
|
|
102
|
+
year: *year_2024
|
|
103
|
+
run_args:
|
|
104
|
+
docker_image: brainles/brats24_meningioma_faking_it
|
|
105
|
+
input_name_schema: *input_name_schema
|
|
106
|
+
requires_root: false
|
|
107
|
+
parameters_file: false
|
|
108
|
+
shm_size: "4gb"
|
|
109
|
+
cpu_compatible: true # ~8 hours
|
|
110
|
+
subject_modality_separator: "_"
|
|
111
|
+
|
|
112
|
+
|
|
113
|
+
|
|
@@ -0,0 +1,94 @@
|
|
|
1
|
+
constants:
|
|
2
|
+
input_name_schema: &input_name_schema "BraTS-MET-{id:05d}-000"
|
|
3
|
+
challenge: &challenge "Brain Metastases Segmentation"
|
|
4
|
+
challenge_manuscript:
|
|
5
|
+
2025: &challenge_manuscript_2025 "https://arxiv.org/abs/2504.12527"
|
|
6
|
+
2023: &challenge_manuscript_2023 "https://arxiv.org/abs/2306.00838"
|
|
7
|
+
years:
|
|
8
|
+
2025: &year_2025 2025
|
|
9
|
+
2023: &year_2023 2023
|
|
10
|
+
ranks:
|
|
11
|
+
1st: &rank_1 1st
|
|
12
|
+
2nd: &rank_2 2nd
|
|
13
|
+
3rd: &rank_3 3rd
|
|
14
|
+
|
|
15
|
+
algorithms:
|
|
16
|
+
|
|
17
|
+
### 2025 Algorithms ###
|
|
18
|
+
|
|
19
|
+
BraTS25_1:
|
|
20
|
+
meta:
|
|
21
|
+
authors: Maria Bancerek, et al.
|
|
22
|
+
paper: N/A
|
|
23
|
+
challenge: *challenge
|
|
24
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
25
|
+
rank: *rank_1
|
|
26
|
+
year: *year_2025
|
|
27
|
+
run_args:
|
|
28
|
+
docker_image: brainles/brats25_met_gli-team:latest
|
|
29
|
+
input_name_schema: *input_name_schema
|
|
30
|
+
requires_root: true
|
|
31
|
+
|
|
32
|
+
BraTS25_2:
|
|
33
|
+
meta:
|
|
34
|
+
authors: Wes Krikorian, et al.
|
|
35
|
+
paper: N/A
|
|
36
|
+
challenge: *challenge
|
|
37
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
38
|
+
rank: *rank_2
|
|
39
|
+
year: *year_2025
|
|
40
|
+
run_args:
|
|
41
|
+
docker_image: brainles/brats25_met_weskrikorian:latest
|
|
42
|
+
input_name_schema: *input_name_schema
|
|
43
|
+
requires_root: true
|
|
44
|
+
cpu_compatible: true
|
|
45
|
+
|
|
46
|
+
### 2023 Algorithms ###
|
|
47
|
+
|
|
48
|
+
BraTS23_1:
|
|
49
|
+
meta:
|
|
50
|
+
authors: Andriy Myronenko, et al.
|
|
51
|
+
paper: N/A
|
|
52
|
+
challenge: *challenge
|
|
53
|
+
challenge_manuscript: *challenge_manuscript_2023
|
|
54
|
+
rank: *rank_1
|
|
55
|
+
year: *year_2023
|
|
56
|
+
run_args:
|
|
57
|
+
docker_image: brainles/brats23_met_nvauto:latest
|
|
58
|
+
input_name_schema: *input_name_schema
|
|
59
|
+
requires_root: true
|
|
60
|
+
parameters_file: true
|
|
61
|
+
shm_size: "32gb"
|
|
62
|
+
|
|
63
|
+
BraTS23_2:
|
|
64
|
+
meta:
|
|
65
|
+
authors: Siwei Yang, et al.
|
|
66
|
+
paper: https://doi.org/10.1007/978-3-031-76163-8_17
|
|
67
|
+
challenge: *challenge
|
|
68
|
+
challenge_manuscript: *challenge_manuscript_2023
|
|
69
|
+
rank: *rank_2
|
|
70
|
+
year: *year_2023
|
|
71
|
+
run_args:
|
|
72
|
+
docker_image: brainles/brats23_met_sy:latest
|
|
73
|
+
input_name_schema: *input_name_schema
|
|
74
|
+
requires_root: true
|
|
75
|
+
parameters_file: false
|
|
76
|
+
additional_files:
|
|
77
|
+
record_id: "13380822"
|
|
78
|
+
|
|
79
|
+
BraTS23_3:
|
|
80
|
+
meta:
|
|
81
|
+
authors: Ziyan Huang, et al.
|
|
82
|
+
paper: https://doi.org/10.1007/978-3-031-76163-8_13
|
|
83
|
+
challenge: *challenge
|
|
84
|
+
challenge_manuscript: *challenge_manuscript_2023
|
|
85
|
+
rank: *rank_3
|
|
86
|
+
year: *year_2023
|
|
87
|
+
run_args:
|
|
88
|
+
docker_image: brainles/brats23_met_blackbean:latest
|
|
89
|
+
input_name_schema: *input_name_schema
|
|
90
|
+
requires_root: true
|
|
91
|
+
parameters_file: true
|
|
92
|
+
shm_size: "4gb"
|
|
93
|
+
cpu_compatible: true
|
|
94
|
+
|
|
@@ -0,0 +1,125 @@
|
|
|
1
|
+
constants:
|
|
2
|
+
input_name_schema: &input_name_schema "BraTS-GLI-{id:05d}-000"
|
|
3
|
+
challenge: &challenge "BraTS MRI Synthesis Challenge (BraSyn)"
|
|
4
|
+
challenge_manuscript:
|
|
5
|
+
2025: &challenge_manuscript_2025 "https://arxiv.org/abs/2305.09011" # same as 2023 & 2024
|
|
6
|
+
2024: &challenge_manuscript_2024 "https://arxiv.org/abs/2305.09011" # same as 2023
|
|
7
|
+
2023: &challenge_manuscript_2023 "https://arxiv.org/abs/2305.09011"
|
|
8
|
+
years:
|
|
9
|
+
2025: &year_2025 2025
|
|
10
|
+
2024: &year_2024 2024
|
|
11
|
+
2023: &year_2023 2023
|
|
12
|
+
ranks:
|
|
13
|
+
1st: &rank_1 1st
|
|
14
|
+
2nd: &rank_2 2nd
|
|
15
|
+
3rd: &rank_3 3rd
|
|
16
|
+
|
|
17
|
+
algorithms:
|
|
18
|
+
|
|
19
|
+
######## 2025 Algorithms ########
|
|
20
|
+
|
|
21
|
+
BraTS25_1:
|
|
22
|
+
meta:
|
|
23
|
+
authors: André Ferreira, et al.
|
|
24
|
+
paper: N/A
|
|
25
|
+
challenge: *challenge
|
|
26
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
27
|
+
rank: *rank_1
|
|
28
|
+
year: *year_2025
|
|
29
|
+
run_args:
|
|
30
|
+
docker_image: brainles/brats25_missing_mri_faking_it:latest
|
|
31
|
+
input_name_schema: *input_name_schema
|
|
32
|
+
requires_root: true
|
|
33
|
+
|
|
34
|
+
BraTS25_2:
|
|
35
|
+
meta:
|
|
36
|
+
authors: Agustin Ujarky Cartaya Lathulerie, et al.
|
|
37
|
+
paper: N/A
|
|
38
|
+
challenge: *challenge
|
|
39
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
40
|
+
rank: *rank_2
|
|
41
|
+
year: *year_2025
|
|
42
|
+
run_args:
|
|
43
|
+
docker_image: brainles/brats25_missing_mri_vicbratssy:latest
|
|
44
|
+
input_name_schema: *input_name_schema
|
|
45
|
+
|
|
46
|
+
BraTS25_3:
|
|
47
|
+
meta:
|
|
48
|
+
authors: Lina Chator, et al.
|
|
49
|
+
paper: N/A
|
|
50
|
+
challenge: *challenge
|
|
51
|
+
challenge_manuscript: *challenge_manuscript_2025
|
|
52
|
+
rank: *rank_3
|
|
53
|
+
year: *year_2025
|
|
54
|
+
run_args:
|
|
55
|
+
docker_image: brainles/brats25_missing_mri_usd-2025-chato-sereda:latest
|
|
56
|
+
input_name_schema: *input_name_schema
|
|
57
|
+
cpu_compatible: true
|
|
58
|
+
|
|
59
|
+
######## 2024 Algorithms ########
|
|
60
|
+
|
|
61
|
+
BraTS24_1:
|
|
62
|
+
meta:
|
|
63
|
+
authors: Jihoon Cho et al.
|
|
64
|
+
paper: https://arxiv.org/abs/2410.10269
|
|
65
|
+
challenge: *challenge
|
|
66
|
+
challenge_manuscript: *challenge_manuscript_2024
|
|
67
|
+
rank: *rank_1
|
|
68
|
+
year: *year_2024
|
|
69
|
+
run_args:
|
|
70
|
+
docker_image: brainles/brats24_missing_mri_cgv:latest
|
|
71
|
+
input_name_schema: *input_name_schema
|
|
72
|
+
requires_root: false
|
|
73
|
+
parameters_file: true
|
|
74
|
+
additional_files:
|
|
75
|
+
record_id: "14287969"
|
|
76
|
+
param_name: ["first_weights", "second_weights"]
|
|
77
|
+
param_path: ["first_weight.bin", "second_weight.pth"]
|
|
78
|
+
|
|
79
|
+
BraTS24_2:
|
|
80
|
+
meta:
|
|
81
|
+
authors: Haowen Pang
|
|
82
|
+
paper: N/A
|
|
83
|
+
challenge: *challenge
|
|
84
|
+
challenge_manuscript: *challenge_manuscript_2024
|
|
85
|
+
rank: *rank_2
|
|
86
|
+
year: *year_2024
|
|
87
|
+
run_args:
|
|
88
|
+
docker_image: brainles/brats24_missing_mri_bit_isip:latest
|
|
89
|
+
input_name_schema: *input_name_schema
|
|
90
|
+
requires_root: false
|
|
91
|
+
parameters_file: true
|
|
92
|
+
additional_files:
|
|
93
|
+
record_id: "14288120"
|
|
94
|
+
|
|
95
|
+
BraTS24_3:
|
|
96
|
+
meta:
|
|
97
|
+
authors: Minjoo Lim et al.
|
|
98
|
+
paper: https://arxiv.org/abs/2502.19390
|
|
99
|
+
challenge: *challenge
|
|
100
|
+
challenge_manuscript: *challenge_manuscript_2024
|
|
101
|
+
rank: *rank_3
|
|
102
|
+
year: *year_2024
|
|
103
|
+
run_args:
|
|
104
|
+
docker_image: brainles/brats24_missing_mri_plave:latest
|
|
105
|
+
input_name_schema: *input_name_schema
|
|
106
|
+
requires_root: false
|
|
107
|
+
parameters_file: true
|
|
108
|
+
|
|
109
|
+
######## 2023 Algorithms ########
|
|
110
|
+
|
|
111
|
+
BraTS23_1:
|
|
112
|
+
meta:
|
|
113
|
+
authors: Ivo Baltruschat
|
|
114
|
+
paper: https://arxiv.org/abs/2403.07800
|
|
115
|
+
challenge: *challenge
|
|
116
|
+
challenge_manuscript: *challenge_manuscript_2023
|
|
117
|
+
rank: *rank_1
|
|
118
|
+
year: *year_2023
|
|
119
|
+
run_args:
|
|
120
|
+
docker_image: brainles/brats23_missing_mri_onembyte:latest
|
|
121
|
+
input_name_schema: *input_name_schema
|
|
122
|
+
requires_root: false
|
|
123
|
+
parameters_file: true
|
|
124
|
+
additional_files:
|
|
125
|
+
record_id: "15846210"
|