AxonDeepSeg 5.1.0.dev0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- AxonDeepSeg/__init__.py +20 -0
- AxonDeepSeg/ads_napari/Settings_menu_ui.ui +83 -0
- AxonDeepSeg/ads_napari/__init__.py +5 -0
- AxonDeepSeg/ads_napari/_widget.py +1120 -0
- AxonDeepSeg/ads_napari/napari.yaml +11 -0
- AxonDeepSeg/ads_napari/settings_menu_ui.py +78 -0
- AxonDeepSeg/ads_utils.py +243 -0
- AxonDeepSeg/apply_model.py +192 -0
- AxonDeepSeg/download_model.py +112 -0
- AxonDeepSeg/download_tests.py +75 -0
- AxonDeepSeg/integrity_test.py +91 -0
- AxonDeepSeg/logo_ads-alpha.png +0 -0
- AxonDeepSeg/logo_ads-alpha_small.png +0 -0
- AxonDeepSeg/model_cards.py +70 -0
- AxonDeepSeg/morphometrics/__init__.py +0 -0
- AxonDeepSeg/morphometrics/compute_morphometrics.py +548 -0
- AxonDeepSeg/morphometrics/launch_morphometrics_computation.py +302 -0
- AxonDeepSeg/params.py +78 -0
- AxonDeepSeg/postprocessing.py +171 -0
- AxonDeepSeg/segment.py +308 -0
- AxonDeepSeg/testing/__init__.py +0 -0
- AxonDeepSeg/testing/launch_performance_metrics.py +39 -0
- AxonDeepSeg/testing/segmentation_scoring.py +348 -0
- AxonDeepSeg/version.txt +1 -0
- AxonDeepSeg/visualization/__init__.py +0 -0
- AxonDeepSeg/visualization/colorization.py +114 -0
- AxonDeepSeg/visualization/merge_masks.py +39 -0
- AxonDeepSeg/visualization/simulate_axons.py +110 -0
- axondeepseg-5.1.0.dev0.dist-info/LICENSE +21 -0
- axondeepseg-5.1.0.dev0.dist-info/METADATA +132 -0
- axondeepseg-5.1.0.dev0.dist-info/RECORD +34 -0
- axondeepseg-5.1.0.dev0.dist-info/WHEEL +5 -0
- axondeepseg-5.1.0.dev0.dist-info/entry_points.txt +9 -0
- axondeepseg-5.1.0.dev0.dist-info/top_level.txt +1 -0
AxonDeepSeg/__init__.py
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import os
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import sys
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__name__ = "AxonDeepSeg"
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version_file = os.path.abspath(os.path.join(__file__, os.pardir, "version.txt"))
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with open(version_file, 'r') as f:
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__version__ = f.read().rstrip()
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# make sure repo directory (two directories up) is on path (to access config.py)
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__repo_dir__ = os.path.abspath(os.path.join(__file__, os.pardir, os.pardir))
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sys.path.append(__repo_dir__)
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# verify that the repo was downloaded with `git clone`
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if os.path.exists(os.path.join(__repo_dir__, ".git")):
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import subprocess
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__git_sha1__ = subprocess.check_output(["git", "-C", __repo_dir__, "rev-parse", "HEAD"]).decode("utf-8").rstrip()
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else:
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__git_sha1__ = "unknown commit"
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__version_string__ = f"AxonDeepSeg v{__version__} - {__git_sha1__}"
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<?xml version="1.0" encoding="UTF-8"?>
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<ui version="4.0">
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<class>Settings_menu_ui</class>
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<widget class="QWidget" name="Settings_menu_ui">
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<property name="windowModality">
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<enum>Qt::WindowModal</enum>
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</property>
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<property name="geometry">
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<rect>
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<x>0</x>
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<y>0</y>
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<width>399</width>
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<height>209</height>
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</rect>
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</property>
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<property name="windowTitle">
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<string>Settings menu</string>
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</property>
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<layout class="QVBoxLayout" name="verticalLayout">
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<item>
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<layout class="QHBoxLayout" name="horizontalLayout_6">
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<item>
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<widget class="QLabel" name="label_5">
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<property name="text">
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<string>GPU ID</string>
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</property>
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</widget>
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</item>
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<item>
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<widget class="QSpinBox" name="gpu_id_spinBox"/>
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</item>
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</layout>
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</item>
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<item>
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<layout class="QHBoxLayout" name="horizontalLayout_4">
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<item>
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<widget class="QLabel" name="label_4">
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<property name="text">
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<string>Axon Shape</string>
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</property>
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</widget>
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</item>
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<item>
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<widget class="QComboBox" name="axon_shape_comboBox">
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<item>
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<property name="text">
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<string>circle</string>
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</property>
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</item>
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<item>
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<property name="text">
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<string>ellipse</string>
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</property>
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</item>
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</widget>
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</item>
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</layout>
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</item>
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<item>
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<widget class="QPushButton" name="done_button">
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<property name="text">
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<string>Done</string>
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</property>
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</widget>
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</item>
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<item>
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<spacer name="verticalSpacer">
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<property name="orientation">
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<enum>Qt::Vertical</enum>
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</property>
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<property name="sizeHint" stdset="0">
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<size>
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<width>20</width>
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<height>40</height>
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</size>
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</property>
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</spacer>
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</item>
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</layout>
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</widget>
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<resources/>
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<connections/>
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</ui>
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