AeroViz 0.1.3b0__py3-none-any.whl → 0.1.4__py3-none-any.whl

AeroViz/tools/database.py

@@ -45,7 +45,8 @@ def load_dataset_by_url(dataset_name: Literal["Tunghai", "Taipei"] = "Tunghai")
     response = requests.get(url)
 
     if response.status_code == 200:
-        return read_csv(StringIO(response.text), parse_dates=['Time'], index_col='Time')
+        return read_csv(StringIO(response.text), na_values=('E', 'F', '-', '_', '#', '*'), index_col=0,
+                        parse_dates=True, low_memory=False)
     else:
         print(f"Failed to download file: {response.status_code}")
         print(response.text)  # Print the response text for debugging
@@ -54,7 +55,7 @@ def load_dataset_by_url(dataset_name: Literal["Tunghai", "Taipei"] = "Tunghai")
 
 def load_dataset_local(dataset_name: Literal["Tunghai", "Taipei", "PNSD"] = "Tunghai") -> DataFrame:
     base_dir = Path(__file__).resolve().parent.parent
-    config_dir = base_dir / 'config'
+    config_dir = base_dir / 'data'
 
     dataset_paths = {
         "Tunghai": config_dir / 'DEFAULT_DATA.csv',
@@ -70,7 +71,8 @@ def load_dataset_local(dataset_name: Literal["Tunghai", "Taipei", "PNSD"] = "Tun
     if not file_path.exists():
         raise FileNotFoundError(f"The file {file_path} does not exist.")
 
-    return read_csv(file_path, parse_dates=['Time'], index_col='Time', na_values=('-', 'E', 'F'), low_memory=False)
+    return read_csv(file_path, na_values=('E', 'F', '-', '_', '#', '*'), index_col=0, parse_dates=True,
+                    low_memory=False)
 
 
 class DataBase:
@@ -79,15 +81,11 @@ class DataBase:
         if file_path is not None:
             file_path = Path(file_path)
             if file_path.exists():
-                return read_csv(file_path, parse_dates=['Time'], index_col='Time', na_values=('-', 'E', 'F'),
+                return read_csv(file_path, na_values=('E', 'F', '-', '_', '#', '*'), index_col=0, parse_dates=True,
                                 low_memory=False)
 
         if load_data ^ load_PSD:
-            if load_data:
-                return load_dataset_local("Tunghai")
-
-            elif load_PSD:
-                return load_dataset_local("PNSD")
+            return load_dataset_local("Tunghai") if load_data else load_dataset_local("PNSD")
 
         else:
             raise ValueError("Exactly one of 'load_data' or 'load_PSD' must be True.")

AeroViz/tools/datareader.py

@@ -14,8 +14,8 @@ class FileHandler(ABC):
 
 class CsvFileHandler(FileHandler):
     def read_data(self, file_path: Path) -> DataFrame:
-        return read_csv(file_path, na_values=('-', 'E', 'F', '#', '*'),
-                        parse_dates=['Time'], index_col='Time', low_memory=False)
+        return read_csv(file_path, na_values=('E', 'F', '-', '_', '#', '*'), index_col=0, parse_dates=True,
+                        low_memory=False)
 
 
 class JsonFileHandler(FileHandler):
@@ -25,7 +25,7 @@ class JsonFileHandler(FileHandler):
 
 class ExcelFileHandler(FileHandler):
     def read_data(self, file_path: Path) -> DataFrame:
-        return read_excel(file_path, parse_dates=['Time'])
+        return read_excel(file_path, index_col=0, parse_dates=True, )
 
 
 class DataReaderFactory:

{AeroViz-0.1.3b0.dist-info → AeroViz-0.1.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: AeroViz
-Version: 0.1.3b0
+Version: 0.1.4
 Summary: Aerosol science
 Home-page: https://github.com/Alex870521/AeroViz
 Author: alex

AeroViz-0.1.4.dist-info/RECORD

@@ -0,0 +1,112 @@
+AeroViz/__init__.py,sha256=A5W6SR71uY_eW44Sh-Yk6blJQ_G1aHrkSzeP2YTPQc4,371
+AeroViz/data/DEFAULT_DATA.csv,sha256=eeeyeh8vSLKkE5tAF0TYnUNOyQIH98VA41bJaAP204Y,2248526
+AeroViz/data/DEFAULT_PNSD_DATA.csv,sha256=imLvLA80oYwo_jzXZtlQn5hZ76d47HUIlK2jp0tZPrg,2636511
+AeroViz/dataProcess/__init__.py,sha256=D3rTVUiGfs_daGuaotVtbijOgLAp6HaRWchj-zoEnHw,828
+AeroViz/dataProcess/Chemistry/__init__.py,sha256=vWlQVQqyX2R_qUQ8cLrIYWmdqLBaxbYwK3PaO7zRqIw,1986
+AeroViz/dataProcess/Chemistry/_calculate.py,sha256=q7ojTFPok0vg8k_1PMECNdP5CPanR9NWQ4Rx5iTcHew,599
+AeroViz/dataProcess/Chemistry/_isoropia.py,sha256=PJPdqErssUPnrksR6BocmgQch1DB7lULyge7diOq9uc,3304
+AeroViz/dataProcess/Chemistry/_mass_volume.py,sha256=oqFjRDYZ1om0_kG4g8XNi2QpUPcHsukpnWKydQoNEVg,5394
+AeroViz/dataProcess/Chemistry/_ocec.py,sha256=75r2EroxVrcp2tSHgNC9TAif_MeJeRlrFyo6DvCLemo,5957
+AeroViz/dataProcess/Chemistry/_partition.py,sha256=tKhb6BJns46UiUlEq6Zq7ahYnvUJ_whY3tWE54C3bqU,1023
+AeroViz/dataProcess/Chemistry/_teom.py,sha256=IiM-TrifWpQLTbKllG-4k4c3mvQulfcmjswWu6muCXA,486
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AeroViz/rawDataReader/script/IGAC_TH.py

@@ -1,104 +0,0 @@
-# read meteorological data from google sheet
-
-
-import numpy as np
-from pandas import read_csv, concat, to_datetime
-
-from AeroViz.rawDataReader.core import AbstractReader
-
-
-class Reader(AbstractReader):
-    nam = 'IGAC_TH'
-
-    def _raw_reader(self, _file):
-
-        self.meta['freq'] = self._oth_set.get('data_freq') or self.meta['freq']
-
-        with (_file).open('r', encoding='utf-8-sig', errors='ignore') as f:
-            _df = read_csv(f, low_memory=False, index_col=0)
-
-            _df.index = to_datetime(_df.index, errors='coerce', format=self._oth_set.get('date_format') or 'mixed')
-            _df.index.name = 'time'
-
-            _df.columns = _df.keys().str.strip(' ')
-
-            _df = _df.loc[_df.index.dropna()].copy()
-
-        return _df.loc[~_df.index.duplicated()]
-
-    ## QC data
-    def _QC(self, _df):
-
-        ## QC parameter, function (MDL SE LE)
-        _mdl = {
-            'Na+': 0.05,
-            'NH4+': 0.05,
-            'K+': 0.05,
-            'Mg2+': 0.05,
-            'Ca2+': 0.05,
-            'Cl-': 0.05,
-            'NO2-': 0.05,
-            'NO3-': 0.05,
-            'SO42-': 0.05,
-        }
-
-        def _se_le(_df_, _log=False):
-            _df_ = np.log10(_df_) if _log else _df_
-
-            _df_qua = _df_.quantile([.25, .75])
-            _df_q1, _df_q3 = _df_qua.loc[.25].copy(), _df_qua.loc[.75].copy()
-            _df_iqr = _df_q3 - _df_q1
-
-            _se = concat([_df_q1 - 1.5 * _df_iqr] * len(_df_), axis=1).T.set_index(_df_.index)
-            _le = concat([_df_q3 + 1.5 * _df_iqr] * len(_df_), axis=1).T.set_index(_df_.index)
-
-            if _log:
-                return 10 ** _se, 10 ** _le
-            return _se, _le
-
-        _cation, _anion, _main = ['Na+', 'NH4+', 'K+', 'Mg2+', 'Ca2+'], ['Cl-', 'NO2-', 'NO3-', 'SO42-', ], ['SO42-',
-                                                                                                             'NO3-',
-                                                                                                             'NH4+']
-
-        _df_salt = _df[_mdl.keys()].copy()
-        _df_pm = _df['PM2.5'].copy()
-
-        ## lower than PM2.5
-        ## conc. of main salt should be present at the same time (NH4+, SO42-, NO3-)
-        _df_salt = _df_salt.mask(_df_salt.sum(axis=1, min_count=1) > _df_pm).dropna(subset=_main).copy()
-
-        ## mdl
-        for (_key, _df_col), _mdl_val in zip(_df_salt.items(), _mdl.values()):
-            _df_salt[_key] = _df_col.mask(_df_col < _mdl_val, _mdl_val / 2)
-
-        ## group by time (per month)
-        _df_salt['tm'] = _df_salt.index.strftime('%Y-%m')
-
-        _df_lst = []
-        for _ky, _df_grp in _df_salt.groupby('tm'):
-            _df_grp = _df_grp[_mdl.keys()].copy()
-
-            ## calculate SE LE
-            ## salt < LE
-            _se, _le = _se_le(_df_grp, _log=True)
-            _df_grp = _df_grp.mask(_df_grp > _le).copy()
-
-            ## C/A, A/C
-            _rat_CA = (_df_grp[_cation].sum(axis=1) / _df_grp[_anion].sum(axis=1)).to_frame()
-            _rat_AC = (1 / _rat_CA).copy()
-
-            _se, _le = _se_le(_rat_CA, )
-            _cond_CA = (_rat_CA < _le) & (_rat_CA > 0)
-
-            _se, _le = _se_le(_rat_AC, )
-            _cond_AC = (_rat_AC < _le) & (_rat_AC > 0)
-
-            _df_grp = _df_grp.where((_cond_CA * _cond_AC)[0]).copy()
-
-            ## conc. of main salt > SE
-            _se, _le = _se_le(_df_grp[_main], _log=True)
-            _df_grp[_main] = _df_grp[_main].mask(_df_grp[_main] < _se).copy()
-
-            _df_lst.append(_df_grp)
-
-        return concat(_df_lst).reindex(_df.index)

AeroViz/rawDataReader/script/OCEC_LCRES.py

@@ -1,34 +0,0 @@
-from pandas import to_datetime, read_csv
-
-from AeroViz.rawDataReader.core import AbstractReader
-
-
-class Reader(AbstractReader):
-    nam = 'OCEC_LCRES'
-
-    def _raw_reader(self, _file):
-        with open(_file, 'r', encoding='utf-8', errors='ignore') as f:
-            _df = read_csv(f, skiprows=3)
-
-            _col = {'Thermal/Optical OC (ugC/LCm^3)': 'Thermal_OC',
-                    'Thermal/Optical EC (ugC/LCm^3)': 'Thermal_EC',
-                    'OC=TC-BC (ugC/LCm^3)': 'Optical_OC',
-                    'BC (ugC/LCm^3)': 'Optical_EC',
-                    'Sample Volume Local Condition Actual m^3': 'Sample_Volume',
-                    'TC (ugC/LCm^3)': 'TC', }
-
-            _tm_idx = to_datetime(_df['Start Date/Time'], errors='coerce')
-            _df['time'] = _tm_idx
-
-            _df = _df.dropna(subset='time').loc[~_tm_idx.duplicated()].set_index('time')
-
-        return _df[_col.keys()].rename(columns=_col)
-
-    ## QC data
-    def _QC(self, _df):
-        _df[['Thermal_OC', 'Optical_OC']] = _df[['Thermal_OC', 'Optical_OC']].where(
-            _df[['Thermal_OC', 'Optical_OC']] > 0.3).copy()
-        _df[['Thermal_EC', 'Optical_EC']] = _df[['Thermal_EC', 'Optical_EC']].where(
-            _df[['Thermal_EC', 'Optical_EC']] > .015).copy()
-
-        return _df

AeroViz/rawDataReader/script/OCEC_RES.py

@@ -1,28 +0,0 @@
-from pandas import to_datetime, read_csv
-
-from AeroViz.rawDataReader.core import AbstractReader
-
-
-class Reader(AbstractReader):
-    nam = 'OCEC_RES'
-
-    def _raw_reader(self, _file):
-        with open(_file, 'r', encoding='utf-8', errors='ignore') as f:
-            _df = read_csv(f, skiprows=3)
-
-            _col = {'OCPk1-ug C': 'OC1',
-                    'OCPk2-ug C': 'OC2',
-                    'OCPk3-ug C': 'OC3',
-                    'OCPk4-ug C': 'OC4',
-                    'Pyrolized C ug': 'PC', }
-
-            _tm_idx = to_datetime(_df['Start Date/Time'], errors='coerce')
-            _df['time'] = _tm_idx
-
-            _df = _df.dropna(subset='time').loc[~_tm_idx.duplicated()].set_index('time')
-
-        return _df[_col.keys()].rename(columns=_col)
-
-    ## QC data
-    def _QC(self, _df):
-        return _df.where(_df > 0)

AeroViz/rawDataReader/script/VOC_TH.py

@@ -1,30 +0,0 @@
-# read meteorological data from google sheet
-
-
-from pandas import read_csv
-
-from AeroViz.rawDataReader.core import AbstractReader
-
-
-class Reader(AbstractReader):
-    nam = 'VOC_TH'
-
-    def _raw_reader(self, _file):
-        _keys = ['Isopentane', 'Hexane', '2-Methylhexane', '3-Methylhexane', '2-Methylheptane', '3-Methylheptane',
-                 'Propene', '1.3-Butadiene', 'Isoprene', '1-Octene',
-                 'Benzene', 'Toluene', 'Ethylbenzene', 'm.p-Xylene', 'o-Xylene', 'Iso-Propylbenzene', 'Styrene',
-                 'n-Propylbenzene', '3.4-Ethyltoluene', '1.3.5-TMB', '2-Ethyltoluene', '1.2.4-TMB', '1.2.3-TMB',
-                 'Acetaldehyde', 'Ethanol', 'Acetone', 'IPA', 'Ethyl Acetate', 'Butyl Acetate',
-                 'VCM', 'TCE', 'PCE', '1.4-DCB', '1.2-DCB']
-
-        with (_file).open('r', encoding='utf-8-sig', errors='ignore') as f:
-            _df = read_csv(f, parse_dates=[0], index_col=[0], na_values=['-', 'N.D.'])
-
-            _df.columns = _df.keys().str.strip(' ')
-            _df.index.name = 'time'
-
-            _df = _df[_keys].loc[_df.index.dropna()]
-        return _df.loc[~_df.index.duplicated()]
-
-    def _QC(self, _df):
-        return _df

AeroViz/rawDataReader/script/VOC_ZM.py

@@ -1,37 +0,0 @@
-# read meteorological data from google sheet
-
-
-from pandas import read_csv
-
-from AeroViz.rawDataReader.core import AbstractReader
-
-
-class Reader(AbstractReader):
-    nam = 'VOC_ZM'
-
-    def _raw_reader(self, _file):
-        _keys = ['Ethane', 'Propane', 'Isobutane', 'n-Butane', 'Cyclopentane', 'Isopentane',
-                 'n-Pentane', '2,2-Dimethylbutane', '2,3-Dimethylbutane', '2-Methylpentane',
-                 '3-Methylpentane', 'n-Hexane', 'Methylcyclopentane', '2,4-Dimethylpentane',
-                 'Cyclohexane', '2-Methylhexane', '2-Methylhexane', '3-Methylheptane',
-                 '2,2,4-Trimethylpentane', 'n-Heptane', 'Methylcyclohexane',
-                 '2,3,4-Trimethylpentane', '2-Methylheptane', '3-Methylhexane', 'n-Octane',
-                 'n-Nonane', 'n-Decane', 'n-Undecane', 'Ethylene', 'Propylene', 't-2-Butene',
-                 '1-Butene', 'cis-2-Butene', 't-2-Pentene', '1-Pentene', 'cis-2-Pentene',
-                 'isoprene', 'Acetylene', 'Benzene', 'Toluene', 'Ethylbenzene', 'm,p-Xylene',
-                 'Styrene', 'o-Xylene', 'Isopropylbenzene', 'n-Propylbenzene', 'm-Ethyltoluene',
-                 'p-Ethyltoluene', '1,3,5-Trimethylbenzene', 'o-Ethyltoluene',
-                 '1,2,4-Trimethylbenzene', '1,2,3-Trimethylbenzene', 'm-Diethylbenzene',
-                 'p-Diethylbenzene']
-
-        with (_file).open('r', encoding='utf-8-sig', errors='ignore') as f:
-            _df = read_csv(f, parse_dates=[0], index_col=[0], na_values=['-'])
-
-            _df.columns = _df.keys().str.strip(' ')
-            _df.index.name = 'time'
-
-            _df = _df[_keys].loc[_df.index.dropna()]
-        return _df.loc[~_df.index.duplicated()]
-
-    def _QC(self, _df):
-        return _df

AeroViz-0.1.3b0.dist-info/RECORD

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