AeroViz 0.1.12__py3-none-any.whl → 0.1.13__py3-none-any.whl

AeroViz/dataProcess/Optical/_IMPROVE.py

@@ -41,7 +41,7 @@ def _revised(_df_mass, _df_RH):
 
         _df['AS'] = 2.2 * _frhs * _df_mass['S_AS'] + 4.8 * _frhl * _df_mass['L_AS']
         _df['AN'] = 2.4 * _frhs * _df_mass['S_AN'] + 5.1 * _frhl * _df_mass['L_AN']
-        _df['OM'] = 2.8 * _df_mass['S_OM'] + 6.1 * _frhl * _df_mass['L_OM']
+        _df['OM'] = 2.8 * _df_mass['S_OM'] + 6.1 * _df_mass['L_OM']
         _df['Soil'] = _df_mass['Soil']
         _df['SS'] = 1.7 * _frhss * _df_mass['SS']
         _df['EC'] = 10 * _df_mass['EC']

AeroViz/rawDataReader/script/APS.py

@@ -22,19 +22,23 @@ class Reader(AbstractReader):
     # QC data
     def _QC(self, _df):
         _df = _df.copy()
+        _index = _df.index.copy()
 
         # mask out the data size lower than 7
-        _df['total'] = _df.sum(axis=1, min_count=1) * (np.diff(np.log(_df.keys().to_numpy(float)))).mean()
-        _df_size = _df['total'].dropna().resample('1h').size().resample(_df.index.freq).ffill()
-        _df = _df.mask(_df_size < 7)
+        _df.loc[:, 'total'] = _df.sum(axis=1, min_count=1) * (np.diff(np.log(_df.keys().to_numpy(float)))).mean()
 
-        # remove total conc. lower than 700
-        _df = _df.mask(_df['total'] > 700)
+        hourly_counts = (_df['total']
+                         .dropna()
+                         .resample('h')
+                         .size()
+                         .resample('6min')
+                         .ffill()
+                         .reindex(_df.index, method='ffill', tolerance='6min'))
 
-        # not confirmed
-        # remove the bin over 4000 nm which num. conc. larger than 1
-        # _df_remv_ky = _df.keys()[:-2][_df.keys()[:-2]>=4.]
+        # Remove data with less than 6 data per hour
+        _df = _df.mask(hourly_counts < 6)
 
-        # _df_1hr[_df_remv_ky] = _df_1hr[_df_remv_ky].copy().mask(_df_1hr[_df_remv_ky]>1.)
+        # remove total conc. lower than 700 or lower than 1
+        _df = _df.mask((_df['total'] > 700) | (_df['total'] < 1))
 
         return _df[_df.keys()[:-1]]

AeroViz/rawDataReader/script/OCEC.py

@@ -9,12 +9,12 @@ class Reader(AbstractReader):
 
     def _raw_reader(self, file):
         with open(file, 'r', encoding='utf-8', errors='ignore') as f:
-            _df = read_csv(f, skiprows=3)
+            _df = read_csv(f, skiprows=3, on_bad_lines='skip')
 
             _df['Start Date/Time'] = _df['Start Date/Time'].str.strip()
             _df['time'] = to_datetime(_df['Start Date/Time'], format='%m/%d/%Y %I:%M:%S %p', errors='coerce')
 
-            if _df['time'].isna().any():
+            if _df['time'].isna().all():
                 _df['time'] = to_datetime(_df['Start Date/Time'], format='%m/%d/%Y %H:%M:%S', errors='coerce')
 
             _df = _df.set_index('time')

AeroViz/rawDataReader/script/SMPS.py

@@ -59,27 +59,42 @@ class Reader(AbstractReader):
             if _df_smps.columns[0] != self.size_range[0] or _df_smps.columns[-1] != self.size_range[1]:
                 self.logger.info(f'\tSMPS file: {file.name} is not match the default size range {self.size_range}, '
                                  f'it is ({_df_smps.columns[0]}, {_df_smps.columns[-1]})')
+                return None
 
             return _df_smps.apply(to_numeric, errors='coerce')
 
     # QC data
     def _QC(self, _df):
-        df = _df.copy()
+        _df = _df.copy()
+        _index = _df.index.copy()
 
-        size_range_mask = (df.columns.astype(float) >= self.size_range[0]) & (
-                df.columns.astype(float) <= self.size_range[1])
-        df = df.loc[:, size_range_mask]
+        size_range_mask = (_df.columns.astype(float) >= self.size_range[0]) & (
+                _df.columns.astype(float) <= self.size_range[1])
+        _df = _df.loc[:, size_range_mask]
 
         # mask out the data size lower than 7
-        df.loc[:, 'total'] = df.sum(axis=1, min_count=1) * (np.diff(np.log(df.columns[:-1].to_numpy(float)))).mean()
-        _df_size = df['total'].dropna().resample('1h').size().resample(df.index.freq).ffill()
-        df = df.mask(_df_size < 7)
+        _df.loc[:, 'total'] = _df.sum(axis=1, min_count=1) * (np.diff(np.log(_df.columns[:-1].to_numpy(float)))).mean()
 
-        # remove total conc. lower than 2000
-        df = df.mask(df['total'] < 2000)
+        hourly_counts = (_df['total']
+                         .dropna()
+                         .resample('h')
+                         .size()
+                         .resample('6min')
+                         .ffill()
+                         .reindex(_df.index, method='ffill', tolerance='6min'))
+
+        # Remove data with less than 6 data per hour
+        _df = _df.mask(hourly_counts < 6)
+
+        # remove total conc. (dN) lower than 2000
+        _df = _df.mask(_df['total'] < 2000)
+        _df = _df.drop('total', axis=1)
+
+        # remove single bin conc. (dN/dlogdp) larger than 1e6
+        _df = _df.mask((_df > 1e6).any(axis=1))
 
         # remove the bin over 400 nm which num. conc. larger than 4000
-        _df_remv_ky = df.keys()[:-1][df.keys()[:-1] >= 400.]
-        df[_df_remv_ky] = df[_df_remv_ky].copy().mask(df[_df_remv_ky] > 4000.)
+        large_bins = _df.columns[_df.columns.astype(float) >= 400]
+        _df = _df.mask((_df[large_bins] > 4000).any(axis=1))
 
-        return df[df.keys()[:-1]]
+        return _df

{AeroViz-0.1.12.dist-info → AeroViz-0.1.13.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: AeroViz
-Version: 0.1.12
+Version: 0.1.13
 Summary: Aerosol science
 Author-email: alex <alex870521@gmail.com>
 License: MIT

{AeroViz-0.1.12.dist-info → AeroViz-0.1.13.dist-info}/RECORD

@@ -1,5 +1,5 @@
 AeroViz/__init__.py,sha256=4ICXg4UATkGXIUziaXcPX2Yaqj6OK5SL0ilU1JKeGFw,341
-AeroViz/__pycache__/__init__.cpython-312.pyc,sha256=rFyv4c4j1wZFxgjgaelbYczxY_f23IRZy8MmUe6HJF4,428
+AeroViz/__pycache__/__init__.cpython-312.pyc,sha256=FLHxMkgqsZTVz_j18m8CR_cZw6OVn-HO-yrkHTWaYU8,428
 AeroViz/data/DEFAULT_DATA.csv,sha256=eeeyeh8vSLKkE5tAF0TYnUNOyQIH98VA41bJaAP204Y,2248526
 AeroViz/data/DEFAULT_PNSD_DATA.csv,sha256=imLvLA80oYwo_jzXZtlQn5hZ76d47HUIlK2jp0tZPrg,2636511
 AeroViz/data/hysplit_example_data.txt,sha256=DWfY83EW3fOcv9dW-Y4pudq8-M7BJlXD-tlMSYrAk2w,8946
@@ -13,10 +13,10 @@ AeroViz/dataProcess/Chemistry/_partition.py,sha256=tKhb6BJns46UiUlEq6Zq7ahYnvUJ_
 AeroViz/dataProcess/Chemistry/_teom.py,sha256=IiM-TrifWpQLTbKllG-4k4c3mvQulfcmjswWu6muCXA,486
 AeroViz/dataProcess/Chemistry/isrpia.cnf,sha256=iWXTqsOZFmNrJxAI9nYuilZ9h6ru1icdPFVim7YKc_k,566
 AeroViz/dataProcess/Chemistry/isrpia2.exe,sha256=xFYPTXHSjl_-atmVcTmqqOkTZgUn1p8h-kFMcoGMIQw,1560032
-AeroViz/dataProcess/Chemistry/__pycache__/__init__.cpython-312.pyc,sha256=-QZKV4EnCIk6T63GVXVvd1_BabdLXgyDxOhUMMISgPM,2712
+AeroViz/dataProcess/Chemistry/__pycache__/__init__.cpython-312.pyc,sha256=rIleRsSDQvRrm_ohTbx2RhhWpkfnqc9xD71LNlJRWF4,2712
 AeroViz/dataProcess/Optical/Angstrom_exponent.py,sha256=KSGM_hf2oUPsLoLuhYSRDK5zdekwce9KgqhzRnf2Y4g,706
 AeroViz/dataProcess/Optical/PyMieScatt_update.py,sha256=3W2nqo9sQLqj9dqWh5Eqx2XUdu44bGWDLTa3QnjiUvM,20943
-AeroViz/dataProcess/Optical/_IMPROVE.py,sha256=n3uHUQTivckIrNlbE8rP7lPZGcMWZUAnS_qX8pXd55Q,1670
+AeroViz/dataProcess/Optical/_IMPROVE.py,sha256=deS94SmoW9H3YyFyzCZ6mWLYoY2f2M-UWLr4qN6RwbI,1662
 AeroViz/dataProcess/Optical/__init__.py,sha256=h_IYhaum0DhK7Qw6lWFvjAEv7uAqLVVPEwU0V4hJnX4,1371
 AeroViz/dataProcess/Optical/_absorption.py,sha256=pYHIoj_R23wKvxR4acUqqU9JXKY40wgsFvZH78rETrY,1234
 AeroViz/dataProcess/Optical/_extinction.py,sha256=anUemSXmLvJi2CSxqTYgQCgUW4pSUqgZ0q0xZ4zs0zY,1189
@@ -25,9 +25,9 @@ AeroViz/dataProcess/Optical/_mie_sd.py,sha256=cbWSorfG-l92csaXsZJ7005f8ij2H_VZop
 AeroViz/dataProcess/Optical/_scattering.py,sha256=w5xXXOfafV9a_dXY60YqTyzFDZppjBJeLcKl5PeCQe4,961
 AeroViz/dataProcess/Optical/fRH.pkl,sha256=PhJ-BYTaUDjl2Lp5Wz0zeiLQCzrsNdq8nP7Jd1BXyXE,4528
 AeroViz/dataProcess/Optical/mie_theory.py,sha256=EC3SsUaq5G3SdQyPMQxcosbEokqAgJw-4Gz6moJiOsk,8666
-AeroViz/dataProcess/Optical/__pycache__/PyMieScatt_update.cpython-312.pyc,sha256=W5tzeZnoJ8IF0mWMImZNv7wqTGhny-KkoMxHMgE-R14,32602
-AeroViz/dataProcess/Optical/__pycache__/__init__.cpython-312.pyc,sha256=kLT99igZ1AIE5MLY_pGl3L5AwTvbcHEN5FmFbNciOro,2114
-AeroViz/dataProcess/Optical/__pycache__/mie_theory.cpython-312.pyc,sha256=6pnzZmtCgElE2NAzdUiZ8NwKB2hwhcmxZSO-hAls49s,10662
+AeroViz/dataProcess/Optical/__pycache__/PyMieScatt_update.cpython-312.pyc,sha256=LYzJJp0k6jgTCKJTfY1fdnNlOfozHo2KXwABW13EMD8,32602
+AeroViz/dataProcess/Optical/__pycache__/__init__.cpython-312.pyc,sha256=X-QD03BZkeRSfIr_RaVTj1-_PXIX89YB768KRCdGk0g,2114
+AeroViz/dataProcess/Optical/__pycache__/mie_theory.cpython-312.pyc,sha256=BWN95UyyU_u8F4pJ-58Jn6n4s0eenESDYe5BgAbn9PE,10662
 AeroViz/dataProcess/SizeDistr/__init__.py,sha256=fka1IJW4wZzYWE9HjWi8i03ab0JLFXOUdaHWYs4VHEQ,2172
 AeroViz/dataProcess/SizeDistr/__merge.py,sha256=A-ZmduUA9a0nVM8szhG1AWhsfUPu2UhGIaqFLcmg7Lk,9422
 AeroViz/dataProcess/SizeDistr/_merge.py,sha256=CyZwUc2M4lL-OE74e8mXq41nC6X0LJTAV8TwpO3fS2o,9176
@@ -37,14 +37,14 @@ AeroViz/dataProcess/SizeDistr/_merge_v3.py,sha256=HN2ARFmeWOawOWRPPv_pHEGBBZNgXV
 AeroViz/dataProcess/SizeDistr/_merge_v4.py,sha256=b8RVAievGIOLrmJHJXRsKXQ1tkMkm6rx43S7XAfeXE4,16228
 AeroViz/dataProcess/SizeDistr/_size_distr.py,sha256=ULhGKlxE9QmbDO_PS3HOSKzepeMfJZWabJvGXqsDEvE,3259
 AeroViz/dataProcess/SizeDistr/prop.py,sha256=7f18SOkkLgDiY_g1c1We8g-3WDJJIFcxkfR4F99jUgc,1845
-AeroViz/dataProcess/SizeDistr/__pycache__/__init__.cpython-312.pyc,sha256=vobgdfNHncQnFALFjqHXbtjVbxRgTA-NIVYpb38NOuM,2552
+AeroViz/dataProcess/SizeDistr/__pycache__/__init__.cpython-312.pyc,sha256=Qwohs7S-XWfIKtrLVNwnO-fJ9JOJRPp-DsbhvinJ2tE,2552
 AeroViz/dataProcess/VOC/__init__.py,sha256=8GNP0RMymTkJXK18pSgfLHqrKPWboN-3x1_Ke4UrI44,259
 AeroViz/dataProcess/VOC/_potential_par.py,sha256=h3rVdvtBvC6xHa_ZG4Oq5eXezeSZtHNy6T6I40maIcM,3863
 AeroViz/dataProcess/VOC/support_voc.json,sha256=tMYp_NERqhSriVRE2NavXh33CQ5CnsbJHtmMFlE5q_E,6804
-AeroViz/dataProcess/VOC/__pycache__/__init__.cpython-312.pyc,sha256=vZ0R_PqF1Vg1AHsk9F28VCdDeNYcu0vJhgs6Ff6H89g,716
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+AeroViz/dataProcess/VOC/__pycache__/__init__.cpython-312.pyc,sha256=29EEEGkLJVhyUOBRVAgg0PuCUsNVms1Kv4UL8OnTNko,716
+AeroViz/dataProcess/__pycache__/__init__.cpython-312.pyc,sha256=LX4kwEtUJ5FbMeQ16SayFTAVhHUDH29tzFPMNKtTODk,1067
 AeroViz/dataProcess/core/__init__.py,sha256=FhGwqlP8ZwXZQS0LjH0YOz2g1Q2yJniUUhRZ_jDOQ6k,2707
-AeroViz/dataProcess/core/__pycache__/__init__.cpython-312.pyc,sha256=uK4tH5hPSgqBUEF2j8I0fPgBvjiOX2CbKOdH9c3c8X8,4430
+AeroViz/dataProcess/core/__pycache__/__init__.cpython-312.pyc,sha256=wCflcyS_o3UdgDK9QZP5qJnLU4QLty-sat8AwJXrJ40,4430
 AeroViz/plot/__init__.py,sha256=Cy42d1t58zeutxLYDkm8bFbRNGE0G1T8VpqGj1li1Cw,419
 AeroViz/plot/bar.py,sha256=cSPKJLWGifCzICCZVPcbZtrDrea_AStlwSli9-b-lsA,4246
 AeroViz/plot/box.py,sha256=8zDd8jYndSv5f0P1lFeX0m7VWYh9okYgJTClh2Lj7Dg,2115
@@ -53,30 +53,30 @@ AeroViz/plot/radar.py,sha256=QHXkLQlAZZQDWHcqVGJBeRsGiu45GYmy3lN6gwlh6xY,6965
 AeroViz/plot/regression.py,sha256=mTCNrCAYvH7QjIb_5WlltCR1Kqwer1anpGEsxmO2S3o,7292
 AeroViz/plot/scatter.py,sha256=sxk5QxgC1Jk9PuY18q9aRgR_Ipvg5dM1RkwYQxRkn1c,6787
 AeroViz/plot/violin.py,sha256=pU2Z2yTWocEtImmCAmbtn0WvXtUOrnCGOdDOrLxjooU,2689
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-AeroViz/plot/__pycache__/bar.cpython-312.pyc,sha256=dES5kB3XgvSNwNGjlOjzviJadz6weDEewAdmc8m1Wi8,5954
-AeroViz/plot/__pycache__/box.cpython-312.pyc,sha256=MGKi1tcGbP_GjdKo15zEDOJpQIC5XjjdnvpB-yIblh8,4043
-AeroViz/plot/__pycache__/pie.cpython-312.pyc,sha256=ZXqqVodXWFS9envKHbH-Kv3BaxP9lYfUiC7DeIAWloI,10689
-AeroViz/plot/__pycache__/radar.cpython-312.pyc,sha256=DTm0Jv6SvTPS9nT4VpZ0RTY0KojwkSux5q-fc1LoAVQ,9335
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 AeroViz/plot/distribution/__init__.py,sha256=nhbIegWczkuEfWsE7-2jfF0dnpmPDzJJzjq8Fuh6q5k,28
 AeroViz/plot/distribution/distribution.py,sha256=sAjqtqKavFwQqI8PGPFnpvZFSU-w2UKjcTTC5L91f4E,20595
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 AeroViz/plot/meteorology/CBPF.py,sha256=4BjPNW2H2Q9HSyDvqxGAibQSIieKkt7CrFQo1rmdKWQ,11136
 AeroViz/plot/meteorology/__init__.py,sha256=6HRc9TwUDOohULJ4hURbQSMKlHfoZzG1zLS1AUg0fH4,85
 AeroViz/plot/meteorology/hysplit.py,sha256=gUlg1Gr-PbqDQI8bWqnHR5UpzRGstvGM0QrrT_EpWtg,2910
 AeroViz/plot/meteorology/wind_rose.py,sha256=Bp2LjyJhm5FRINH6UUb70g9rA9kZ1oK-9rLvSGHBjwU,2876
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 AeroViz/plot/optical/__init__.py,sha256=5S2WPq8NouPYgc46c1XBveSL8Cxs3w8wNYN7vWIpB-s,23
 AeroViz/plot/optical/optical.py,sha256=j8LUSga9BvVjZnGKNG8bt62E9xoBoO2OQxvDBqY6U90,13664
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