AdvancedAnalysisFileParser 0.1.1__py3-none-any.whl → 0.1.2__py3-none-any.whl

AdvancedAnalysisFileParser/Warnings/GenotypeWarning.py

@@ -22,11 +22,14 @@ class GenotypeWarning(IWarning):
             if all(isinstance(v, str) for v in mapping.values()):
                 # Old format: genotype→phenotype
                 if sample in mapping:
-                    warning = f"Based on {name}, this sample is defined as <b>{mapping[sample]}</b>"
+                    phenotype = mapping[sample]
+                    if phenotype != "normal":
+                        warning = f"Based on {name}, this sample is defined as <b>{phenotype}</b>"
             elif all(isinstance(v, list) for v in mapping.values()):
                 # New format: phenotype→[genotypes]
                 for phenotype, genotypes in mapping.items():
                     if sample in genotypes:
-                        warning = f"Based on {name}, this sample is defined as <b>{phenotype}</b>"
+                        if phenotype != "normal":
+                            warning = f"Based on {name}, this sample is defined as <b>{phenotype}</b>"
                         break
         return warning

{advancedanalysisfileparser-0.1.1.dist-info → advancedanalysisfileparser-0.1.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: AdvancedAnalysisFileParser
-Version: 0.1.1
+Version: 0.1.2
 Summary: Parse Illumina-DRAGEN TSV/JSON outputs to unified geneyx         JSON with warnings.
 Author: Bar Cohen
 Author-email: Bar Cohen <bar@geneyx.com>

{advancedanalysisfileparser-0.1.1.dist-info → advancedanalysisfileparser-0.1.2.dist-info}/RECORD

@@ -48,14 +48,14 @@ AdvancedAnalysisFileParser/Test/smn_silent_carrier_risk.json,sha256=CMn_hEz-yR2A
 AdvancedAnalysisFileParser/Warnings/CarrierPositiveWarning.py,sha256=Ky137f_jnzYV4BjgyeZQCfRQatpgfjYLwc9kdAMn5VM,1235
 AdvancedAnalysisFileParser/Warnings/ConditionWarning.py,sha256=PQizdGpXVfqgFTeAAKrdXAQQxwiuhWkUABSOX2jrlEU,1707
 AdvancedAnalysisFileParser/Warnings/GbaWarning.py,sha256=oJHRDrocdect-xyCxe_xpP9sp1XP0aZmExb_cwQjoeA,2581
-AdvancedAnalysisFileParser/Warnings/GenotypeWarning.py,sha256=MfchBQtF6wkFvaGd-mtRuiYMjcOtCLl2zkTqvjRi78Q,1491
+AdvancedAnalysisFileParser/Warnings/GenotypeWarning.py,sha256=jbIigpjORSGOQqrMO-gvG8PpnB1GNZ9z9bLN2O_n0ZU,1637
 AdvancedAnalysisFileParser/Warnings/IWarning.py,sha256=DCfpTdSEzeVjrB1yYEP83w-v-OrjJO5lHpdd5Jzkk20,184
 AdvancedAnalysisFileParser/Warnings/SmnWarning.py,sha256=-ZoZHOvHlXD5KoJ372-fZQLCJzOMd8Ac-V3atT9w2uA,2170
 AdvancedAnalysisFileParser/Warnings/WarningFactory.py,sha256=RYwyONBpA84GL-1hIWjR4C9mGuSBthUcDJfX1eui3uU,1340
 AdvancedAnalysisFileParser/Warnings/__init__.py,sha256=v8-22YDAbR87sZdFRpEUmXIQzmXhE-Eq9wa9sC6qoaM,127
-advancedanalysisfileparser-0.1.1.dist-info/licenses/LICENSE,sha256=-qHDWhmLWnBi2Pz88Kd-wacLV754EhSbV6jV0rcOn-s,1070
-advancedanalysisfileparser-0.1.1.dist-info/METADATA,sha256=1IZqiEAmp9-CFv9SUFDRTUVpW_wgkY5Mmy9WMsjvjTo,5094
-advancedanalysisfileparser-0.1.1.dist-info/WHEEL,sha256=YCfwYGOYMi5Jhw2fU4yNgwErybb2IX5PEwBKV4ZbdBo,91
-advancedanalysisfileparser-0.1.1.dist-info/entry_points.txt,sha256=qWyot7L31WqH2O-F0ie0Negr-MbwANuF6vJ_4MVE_sk,175
-advancedanalysisfileparser-0.1.1.dist-info/top_level.txt,sha256=qktb0ZKlTD_sOMGxTg44cJ3zwuHamcsYPVwXHBCSF5U,27
-advancedanalysisfileparser-0.1.1.dist-info/RECORD,,
+advancedanalysisfileparser-0.1.2.dist-info/licenses/LICENSE,sha256=-qHDWhmLWnBi2Pz88Kd-wacLV754EhSbV6jV0rcOn-s,1070
+advancedanalysisfileparser-0.1.2.dist-info/METADATA,sha256=SAqPnLpK0BkX7GgLUWctT5b7gZI-TLxfzje_T-03uY4,5094
+advancedanalysisfileparser-0.1.2.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
+advancedanalysisfileparser-0.1.2.dist-info/entry_points.txt,sha256=qWyot7L31WqH2O-F0ie0Negr-MbwANuF6vJ_4MVE_sk,175
+advancedanalysisfileparser-0.1.2.dist-info/top_level.txt,sha256=qktb0ZKlTD_sOMGxTg44cJ3zwuHamcsYPVwXHBCSF5U,27
+advancedanalysisfileparser-0.1.2.dist-info/RECORD,,

{advancedanalysisfileparser-0.1.1.dist-info → advancedanalysisfileparser-0.1.2.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (82.0.0)
+Generator: setuptools (82.0.1)
 Root-Is-Purelib: true
 Tag: py3-none-any