AMS-BP 0.4.22__py3-none-any.whl → 0.4.40__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (77) hide show
  1. AMS_BP/__init__.py +1 -1
  2. AMS_BP/{configio → core/configio}/experiments.py +5 -0
  3. AMS_BP/{motion → core/motion}/condensate_movement.py +1 -1
  4. AMS_BP/{motion → core/motion}/movement/boundary_conditions.py +1 -1
  5. AMS_BP/{photophysics → core/photophysics}/photon_physics.py +1 -1
  6. AMS_BP/{sample → core/sample}/flurophores/flurophore_schema.py +1 -1
  7. AMS_BP/{sim_microscopy.py → core/sim_microscopy.py} +1 -1
  8. AMS_BP/gui/main.py +36 -5
  9. AMS_BP/gui/sim_worker.py +3 -4
  10. AMS_BP/gui/themes/dark_theme.qss +86 -0
  11. AMS_BP/gui/themes/light_theme.qss +85 -0
  12. AMS_BP/gui/widgets/camera_config_widget.py +15 -9
  13. AMS_BP/gui/widgets/cell_config_widget.py +13 -7
  14. AMS_BP/gui/widgets/channel_config_widget.py +12 -6
  15. AMS_BP/gui/widgets/condensate_config_widget.py +24 -15
  16. AMS_BP/gui/widgets/experiment_config_widget.py +71 -7
  17. AMS_BP/gui/widgets/flurophore_config_widget.py +6 -2
  18. AMS_BP/gui/widgets/global_config_widget.py +13 -6
  19. AMS_BP/gui/widgets/laser_config_widget.py +12 -6
  20. AMS_BP/gui/widgets/molecule_config_widget.py +14 -11
  21. AMS_BP/gui/widgets/utility_widgets/toggleswitch_widget.py +60 -0
  22. AMS_BP/gui/windows/__init__.py +0 -0
  23. AMS_BP/gui/{configuration_window.py → windows/configuration_window.py} +86 -89
  24. AMS_BP/gui/{template_window_selection.py → windows/template_window_selection.py} +35 -5
  25. AMS_BP/main_cli.py +2 -2
  26. AMS_BP/resources/template_configs/metadata_configs.json +21 -3
  27. AMS_BP/resources/template_configs/twocolor_confocal_timeseries_live.toml +399 -0
  28. AMS_BP/resources/template_configs/twocolor_confocal_zstack_fixed.toml +406 -0
  29. AMS_BP/{sim_config.toml → resources/template_configs/twocolor_confocal_zstack_live.toml} +111 -111
  30. AMS_BP/tools/logging/__init__.py +0 -0
  31. {ams_bp-0.4.22.dist-info → ams_bp-0.4.40.dist-info}/METADATA +7 -3
  32. ams_bp-0.4.40.dist-info/RECORD +110 -0
  33. ams_bp-0.4.22.dist-info/RECORD +0 -103
  34. /AMS_BP/{configio → core}/__init__.py +0 -0
  35. /AMS_BP/{cells → core/cells}/__init__.py +0 -0
  36. /AMS_BP/{cells → core/cells}/budding_yeast_cell.py +0 -0
  37. /AMS_BP/{cells → core/cells}/cell_factory.py +0 -0
  38. /AMS_BP/{logging → core/configio}/__init__.py +0 -0
  39. /AMS_BP/{configio → core/configio}/configmodels.py +0 -0
  40. /AMS_BP/{configio → core/configio}/convertconfig.py +0 -0
  41. /AMS_BP/{configio → core/configio}/saving.py +0 -0
  42. /AMS_BP/{groundtruth_generators → core/groundtruth_generators}/__init__.py +0 -0
  43. /AMS_BP/{groundtruth_generators → core/groundtruth_generators}/nuclearporecomplexes.py +0 -0
  44. /AMS_BP/{metadata → core/metadata}/__init__.py +0 -0
  45. /AMS_BP/{metadata → core/metadata}/metadata.py +0 -0
  46. /AMS_BP/{motion → core/motion}/__init__.py +0 -0
  47. /AMS_BP/{motion → core/motion}/movement/__init__.py +0 -0
  48. /AMS_BP/{motion → core/motion}/track_gen.py +0 -0
  49. /AMS_BP/{optics → core/optics}/__init__.py +0 -0
  50. /AMS_BP/{optics → core/optics}/camera/__init__.py +0 -0
  51. /AMS_BP/{optics → core/optics}/camera/detectors.py +0 -0
  52. /AMS_BP/{optics → core/optics}/camera/quantum_eff.py +0 -0
  53. /AMS_BP/{optics → core/optics}/filters/__init__.py +0 -0
  54. /AMS_BP/{optics → core/optics}/filters/channels/__init__.py +0 -0
  55. /AMS_BP/{optics → core/optics}/filters/channels/channelschema.py +0 -0
  56. /AMS_BP/{optics → core/optics}/filters/filters.py +0 -0
  57. /AMS_BP/{optics → core/optics}/lasers/__init__.py +0 -0
  58. /AMS_BP/{optics → core/optics}/lasers/laser_profiles.py +0 -0
  59. /AMS_BP/{optics → core/optics}/lasers/scanning_patterns.py +0 -0
  60. /AMS_BP/{optics → core/optics}/psf/__init__.py +0 -0
  61. /AMS_BP/{optics → core/optics}/psf/psf_engine.py +0 -0
  62. /AMS_BP/{photophysics → core/photophysics}/__init__.py +0 -0
  63. /AMS_BP/{photophysics → core/photophysics}/state_kinetics.py +0 -0
  64. /AMS_BP/{probabilityfuncs → core/probabilityfuncs}/__init__.py +0 -0
  65. /AMS_BP/{probabilityfuncs → core/probabilityfuncs}/markov_chain.py +0 -0
  66. /AMS_BP/{probabilityfuncs → core/probabilityfuncs}/probability_functions.py +0 -0
  67. /AMS_BP/{run_sim_util.py → core/run_sim_util.py} +0 -0
  68. /AMS_BP/{sample → core/sample}/__init__.py +0 -0
  69. /AMS_BP/{sample → core/sample}/flurophores/__init__.py +0 -0
  70. /AMS_BP/{sample → core/sample}/sim_sampleplane.py +0 -0
  71. /AMS_BP/gui/{help_window.py → windows/help_window.py} +0 -0
  72. /AMS_BP/gui/{logging_window.py → windows/logging_window.py} +0 -0
  73. /AMS_BP/{logging → tools/logging}/logutil.py +0 -0
  74. /AMS_BP/{logging → tools/logging}/setup_run_directory.py +0 -0
  75. {ams_bp-0.4.22.dist-info → ams_bp-0.4.40.dist-info}/WHEEL +0 -0
  76. {ams_bp-0.4.22.dist-info → ams_bp-0.4.40.dist-info}/entry_points.txt +0 -0
  77. {ams_bp-0.4.22.dist-info → ams_bp-0.4.40.dist-info}/licenses/LICENSE +0 -0
ams_bp-0.4.40.dist-info/RECORD ADDED
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+ AMS_BP/__init__.py,sha256=rCKDYOiRo5EP_NAuyZFc4JQqqS6gw0ETq8EBpZd5sqI,327
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+ AMS_BP/main_cli.py,sha256=Z2vRNCSY2GZq0yG5unCZI2BAdtKtVnh1DuNuB2rIo2g,5797
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+ AMS_BP/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/core/run_sim_util.py,sha256=UQr0l9rbtTmzuuWXjkIaTQV-ETO5AqyXRwflF6U2WYs,2415
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+ AMS_BP/core/sim_microscopy.py,sha256=zkDynBmEivhRwRsWNxvIO8VL-zUNVPvkkUcdHQSa_fo,19990
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+ AMS_BP/core/cells/__init__.py,sha256=Rd2gpWWUZJxW2u_piI2ZcIqLtYkzVOr_MjU3upiUv8Q,866
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+ AMS_BP/core/cells/budding_yeast_cell.py,sha256=_n0jhiRvrMcPddfoR8Vi4RdOJQTo_nR4JF7ydsrCF98,9448
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+ AMS_BP/core/cells/cell_factory.py,sha256=a-M5xHDkYDHoMv3vbQyn4x0KQ-lshO2CEdfrStLGSOU,4422
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+ AMS_BP/core/configio/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/core/configio/convertconfig.py,sha256=HqJnrIO6CiC_uUWw32Thd25xJbGSQ1_d6JQXKmNDtBE,28321
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+ AMS_BP/core/configio/saving.py,sha256=596QgAadV32rzsN4B2FngGFcBWCzCDnLFN-qtQsv3bM,857
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+ AMS_BP/core/groundtruth_generators/__init__.py,sha256=UPVmhiB81OfyqAes5LoN-n6XgQuBCYCqRPAGd2jpMfc,99
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+ AMS_BP/core/optics/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/core/optics/filters/channels/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/core/optics/filters/channels/channelschema.py,sha256=SConyA5yVdfnI_8sgcxVC8SV7S8tGUJYPPC6jn7lglU,906
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+ AMS_BP/core/optics/lasers/__init__.py,sha256=T7dHohhyLf_pBw4TidarYHWmiwxVXGE71-Bf1aeBbuc,564
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+ AMS_BP/core/optics/lasers/scanning_patterns.py,sha256=Xen96e5BlYI892HzZDXdwm80id6TbyNCNj-qvnRnSnI,3393
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+ AMS_BP/core/optics/psf/__init__.py,sha256=ezrKPgpTeR4gTHOvF0mhF6u2zMMTd8Bgp8PGeOf11fA,121
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+ AMS_BP/core/photophysics/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/core/probabilityfuncs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/core/sample/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/core/sample/sim_sampleplane.py,sha256=szr0Y9zFsaJy0aY_Gm5AAVBbY8UsRwehxowUGfaK_2Q,12889
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+ AMS_BP/core/sample/flurophores/__init__.py,sha256=arLVUx1-yh5T41fH9Mr6RNY8Ao3ZioFQUtsfEZlzQkU,250
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+ AMS_BP/core/sample/flurophores/flurophore_schema.py,sha256=QyWnaNqsyHcci_V8Va0KnU1F7jCQz-J9n1um4vG0zMo,10887
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+ AMS_BP/gui/README.md,sha256=z2XreAPQeeFmKSXbhsa2kznHbk-YbLD55-VPWikNQp4,2778
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+ AMS_BP/gui/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/gui/main.py,sha256=Ej7DcduU8ESjoCvvIao2MPsthvKG-pLhiwaeaMVCOSY,10681
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+ AMS_BP/gui/sim_worker.py,sha256=bwnCzPU0dnBbPwi2eXzM_VBg_gwIwWjyBnjGIOvhkEo,1980
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+ AMS_BP/gui/assets/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/gui/widgets/camera_config_widget.py,sha256=Ripck-RqgTbjbDWjaFKDBSy_fr_VubaqM59irE0HtIY,7764
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+ AMS_BP/gui/widgets/cell_config_widget.py,sha256=eHS7h3hBHG9Qp6SClFRDE4-TwBljdwVx7lDIXNwwdxo,8056
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+ AMS_BP/gui/widgets/channel_config_widget.py,sha256=d1NbpXZf4My-lkWbo3dCGIWIIknF22ZWZfIlK1Sznbc,11000
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+ AMS_BP/gui/widgets/condensate_config_widget.py,sha256=inJlqh92BpzhEPGGOzPQDJwH06uEGMi9510gvZUXz1Q,12564
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+ AMS_BP/gui/widgets/utility_widgets/spectrum_widget.py,sha256=QQjYV-aErjyI1HdOZMIPaddHpi0sag6r4V8nBSdgEn8,3659
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+ AMS_BP/gui/windows/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ AMS_BP/gui/windows/help_window.py,sha256=Jn844Vez7ULC1VGKb4iGgRvuw3wPTd0pcyRv7VWbeV4,790
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+ AMS_BP/gui/windows/logging_window.py,sha256=a7HbmfYP3YavLuyT317YRE1xWXJtB4i8EoK9QAstOv8,2938
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+ AMS_BP/resources/template_configs/sim_config.toml,sha256=CvWNYFXU9QWPiBrGIp_GwW2NDYEBGMLPq3q17JUFt0U,11163
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+ AMS_BP/resources/template_configs/twocolor_widefield_timeseries_live.toml,sha256=Za7uzESrCMxJ79vtk5kxF_RF_bXxa_SOfLktqPLQT34,10316
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