AMR 2.1.1.9234__py3-none-any.whl → 2.1.1.9235__py3-none-any.whl

AMR/datasets.py

@@ -27,7 +27,7 @@ base._libPaths(r_lib_path)
 # Check if the AMR package is installed in R
 if not isinstalled('AMR', lib_loc=r_lib_path):
     print(f"AMR: Installing latest AMR R package to {r_lib_path}...", flush=True)
-    utils.install_packages('AMR', repos='https://msberends.r-universe.dev', quiet=True)
+    utils.install_packages('AMR', repos='beta.amr-for-r.org', quiet=True)
 
 # # Retrieve Python AMR version
 # try:
@@ -43,7 +43,7 @@ if not isinstalled('AMR', lib_loc=r_lib_path):
 # if r_amr_version != python_amr_version:
 #     try:
 #         print(f"AMR: Updating AMR package in {r_lib_path}...", flush=True)
-#         utils.install_packages('AMR', repos='https://msberends.r-universe.dev', quiet=True)
+#         utils.install_packages('AMR', repos='beta.amr-for-r.org', quiet=True)
 #     except Exception as e:
 #         print(f"AMR: Could not update: {e}", flush=True)
 

AMR/functions.py

@@ -37,629 +37,629 @@ def convert_to_python(r_output):
     # Fall-back
     return r_output
 def ab_class(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_class(*args, **kwargs))
 def ab_selector(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_selector(*args, **kwargs))
 def ab_from_text(text, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_from_text(text, *args, **kwargs))
 def ab_name(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_name(x, *args, **kwargs))
 def ab_cid(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_cid(x, *args, **kwargs))
 def ab_synonyms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_synonyms(x, *args, **kwargs))
 def ab_tradenames(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_tradenames(x, *args, **kwargs))
 def ab_group(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_group(x, *args, **kwargs))
 def ab_atc(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_atc(x, *args, **kwargs))
 def ab_atc_group1(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_atc_group1(x, *args, **kwargs))
 def ab_atc_group2(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_atc_group2(x, *args, **kwargs))
 def ab_loinc(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_loinc(x, *args, **kwargs))
 def ab_ddd(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_ddd(x, *args, **kwargs))
 def ab_ddd_units(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_ddd_units(x, *args, **kwargs))
 def ab_info(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_info(x, *args, **kwargs))
 def ab_url(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_url(x, *args, **kwargs))
 def ab_property(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_property(x, *args, **kwargs))
 def add_custom_antimicrobials(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.add_custom_antimicrobials(x))
 def clear_custom_antimicrobials(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.clear_custom_antimicrobials(*args, **kwargs))
 def add_custom_microorganisms(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.add_custom_microorganisms(x))
 def clear_custom_microorganisms(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.clear_custom_microorganisms(*args, **kwargs))
 def age(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.age(x, *args, **kwargs))
 def age_groups(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.age_groups(x, *args, **kwargs))
 def antibiogram(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.antibiogram(x, *args, **kwargs))
 def wisca(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.wisca(x, *args, **kwargs))
 def retrieve_wisca_parameters(wisca_model, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.retrieve_wisca_parameters(wisca_model, *args, **kwargs))
 def aminoglycosides(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.aminoglycosides(only_sir_columns = False, *args, **kwargs))
 def aminopenicillins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.aminopenicillins(only_sir_columns = False, *args, **kwargs))
 def antifungals(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.antifungals(only_sir_columns = False, *args, **kwargs))
 def antimycobacterials(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.antimycobacterials(only_sir_columns = False, *args, **kwargs))
 def betalactams(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.betalactams(only_sir_columns = False, *args, **kwargs))
 def betalactams_with_inhibitor(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.betalactams_with_inhibitor(only_sir_columns = False, *args, **kwargs))
 def carbapenems(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.carbapenems(only_sir_columns = False, *args, **kwargs))
 def cephalosporins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.cephalosporins(only_sir_columns = False, *args, **kwargs))
 def cephalosporins_1st(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.cephalosporins_1st(only_sir_columns = False, *args, **kwargs))
 def cephalosporins_2nd(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.cephalosporins_2nd(only_sir_columns = False, *args, **kwargs))
 def cephalosporins_3rd(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.cephalosporins_3rd(only_sir_columns = False, *args, **kwargs))
 def cephalosporins_4th(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.cephalosporins_4th(only_sir_columns = False, *args, **kwargs))
 def cephalosporins_5th(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.cephalosporins_5th(only_sir_columns = False, *args, **kwargs))
 def fluoroquinolones(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.fluoroquinolones(only_sir_columns = False, *args, **kwargs))
 def glycopeptides(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.glycopeptides(only_sir_columns = False, *args, **kwargs))
 def isoxazolylpenicillins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.isoxazolylpenicillins(only_sir_columns = False, *args, **kwargs))
 def lincosamides(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.lincosamides(only_sir_columns = False, *args, **kwargs))
 def lipoglycopeptides(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.lipoglycopeptides(only_sir_columns = False, *args, **kwargs))
 def macrolides(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.macrolides(only_sir_columns = False, *args, **kwargs))
 def monobactams(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.monobactams(only_sir_columns = False, *args, **kwargs))
 def nitrofurans(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.nitrofurans(only_sir_columns = False, *args, **kwargs))
 def oxazolidinones(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.oxazolidinones(only_sir_columns = False, *args, **kwargs))
 def penicillins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.penicillins(only_sir_columns = False, *args, **kwargs))
 def phenicols(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.phenicols(only_sir_columns = False, *args, **kwargs))
 def polymyxins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.polymyxins(only_sir_columns = False, *args, **kwargs))
 def quinolones(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.quinolones(only_sir_columns = False, *args, **kwargs))
 def rifamycins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.rifamycins(only_sir_columns = False, *args, **kwargs))
 def streptogramins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.streptogramins(only_sir_columns = False, *args, **kwargs))
 def sulfonamides(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.sulfonamides(only_sir_columns = False, *args, **kwargs))
 def tetracyclines(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.tetracyclines(only_sir_columns = False, *args, **kwargs))
 def trimethoprims(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.trimethoprims(only_sir_columns = False, *args, **kwargs))
 def ureidopenicillins(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ureidopenicillins(only_sir_columns = False, *args, **kwargs))
 def amr_class(amr_class, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.amr_class(amr_class, *args, **kwargs))
 def amr_selector(filter, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.amr_selector(filter, *args, **kwargs))
 def administrable_per_os(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.administrable_per_os(only_sir_columns = False, *args, **kwargs))
 def administrable_iv(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.administrable_iv(only_sir_columns = False, *args, **kwargs))
 def not_intrinsic_resistant(only_sir_columns = False, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.not_intrinsic_resistant(only_sir_columns = False, *args, **kwargs))
 def as_ab(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.as_ab(x, *args, **kwargs))
 def is_ab(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_ab(x))
 def ab_reset_session(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ab_reset_session(*args, **kwargs))
 def as_av(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.as_av(x, *args, **kwargs))
 def is_av(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_av(x))
 def as_disk(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.as_disk(x, *args, **kwargs))
 def is_disk(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_disk(x))
 def as_mic(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.as_mic(x, *args, **kwargs))
 def is_mic(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_mic(x))
 def rescale_mic(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.rescale_mic(x, *args, **kwargs))
 def mic_p50(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mic_p50(x, *args, **kwargs))
 def mic_p90(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mic_p90(x, *args, **kwargs))
 def as_mo(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.as_mo(x, *args, **kwargs))
 def is_mo(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_mo(x))
 def mo_uncertainties(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_uncertainties(*args, **kwargs))
 def mo_renamed(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_renamed(*args, **kwargs))
 def mo_failures(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_failures(*args, **kwargs))
 def mo_reset_session(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_reset_session(*args, **kwargs))
 def mo_cleaning_regex(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_cleaning_regex(*args, **kwargs))
 def as_sir(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.as_sir(x, *args, **kwargs))
 def is_sir(x):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_sir(x))
 def is_sir_eligible(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_sir_eligible(x, *args, **kwargs))
 def sir_interpretation_history(clean):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.sir_interpretation_history(clean))
 def atc_online_property(atc_code, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.atc_online_property(atc_code, *args, **kwargs))
 def atc_online_groups(atc_code, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.atc_online_groups(atc_code, *args, **kwargs))
 def atc_online_ddd(atc_code, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.atc_online_ddd(atc_code, *args, **kwargs))
 def atc_online_ddd_units(atc_code, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.atc_online_ddd_units(atc_code, *args, **kwargs))
 def av_from_text(text, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_from_text(text, *args, **kwargs))
 def av_name(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_name(x, *args, **kwargs))
 def av_cid(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_cid(x, *args, **kwargs))
 def av_synonyms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_synonyms(x, *args, **kwargs))
 def av_tradenames(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_tradenames(x, *args, **kwargs))
 def av_group(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_group(x, *args, **kwargs))
 def av_atc(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_atc(x, *args, **kwargs))
 def av_loinc(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_loinc(x, *args, **kwargs))
 def av_ddd(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_ddd(x, *args, **kwargs))
 def av_ddd_units(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_ddd_units(x, *args, **kwargs))
 def av_info(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_info(x, *args, **kwargs))
 def av_url(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_url(x, *args, **kwargs))
 def av_property(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.av_property(x, *args, **kwargs))
 def availability(tbl, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.availability(tbl, *args, **kwargs))
 def bug_drug_combinations(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.bug_drug_combinations(x, *args, **kwargs))
 def count_resistant(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_resistant(*args, **kwargs))
 def count_susceptible(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_susceptible(*args, **kwargs))
 def count_S(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_S(*args, **kwargs))
 def count_SI(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_SI(*args, **kwargs))
 def count_I(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_I(*args, **kwargs))
 def count_IR(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_IR(*args, **kwargs))
 def count_R(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_R(*args, **kwargs))
 def count_all(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_all(*args, **kwargs))
 def n_sir(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.n_sir(*args, **kwargs))
 def count_df(data, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.count_df(data, *args, **kwargs))
 def custom_eucast_rules(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.custom_eucast_rules(*args, **kwargs))
 def eucast_rules(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.eucast_rules(x, *args, **kwargs))
 def eucast_dosage(ab, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.eucast_dosage(ab, *args, **kwargs))
 def export_ncbi_biosample(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.export_ncbi_biosample(x, *args, **kwargs))
 def first_isolate(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.first_isolate(x = None, *args, **kwargs))
 def filter_first_isolate(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.filter_first_isolate(x = None, *args, **kwargs))
 def g_test(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.g_test(x, *args, **kwargs))
 def is_new_episode(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.is_new_episode(x, *args, **kwargs))
 def ggplot_pca(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ggplot_pca(x, *args, **kwargs))
 def ggplot_sir(data, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ggplot_sir(data, *args, **kwargs))
 def geom_sir(position = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.geom_sir(position = None, *args, **kwargs))
 def guess_ab_col(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.guess_ab_col(x = None, *args, **kwargs))
 def italicise_taxonomy(string, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.italicise_taxonomy(string, *args, **kwargs))
 def italicize_taxonomy(string, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.italicize_taxonomy(string, *args, **kwargs))
 def inner_join_microorganisms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.inner_join_microorganisms(x, *args, **kwargs))
 def left_join_microorganisms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.left_join_microorganisms(x, *args, **kwargs))
 def right_join_microorganisms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.right_join_microorganisms(x, *args, **kwargs))
 def full_join_microorganisms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.full_join_microorganisms(x, *args, **kwargs))
 def semi_join_microorganisms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.semi_join_microorganisms(x, *args, **kwargs))
 def anti_join_microorganisms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.anti_join_microorganisms(x, *args, **kwargs))
 def key_antimicrobials(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.key_antimicrobials(x = None, *args, **kwargs))
 def all_antimicrobials(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.all_antimicrobials(x = None, *args, **kwargs))
 def kurtosis(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.kurtosis(x, *args, **kwargs))
 def like(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.like(x, *args, **kwargs))
 def mdro(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mdro(x = None, *args, **kwargs))
 def custom_mdro_guideline(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.custom_mdro_guideline(*args, **kwargs))
 def brmo(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.brmo(x = None, *args, **kwargs))
 def mrgn(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mrgn(x = None, *args, **kwargs))
 def mdr_tb(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mdr_tb(x = None, *args, **kwargs))
 def mdr_cmi2012(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mdr_cmi2012(x = None, *args, **kwargs))
 def eucast_exceptional_phenotypes(x = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.eucast_exceptional_phenotypes(x = None, *args, **kwargs))
 def mean_amr_distance(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mean_amr_distance(x, *args, **kwargs))
 def amr_distance_from_row(amr_distance, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.amr_distance_from_row(amr_distance, *args, **kwargs))
 def mo_matching_score(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_matching_score(x, *args, **kwargs))
 def mo_name(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_name(x, *args, **kwargs))
 def mo_fullname(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_fullname(x, *args, **kwargs))
 def mo_shortname(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_shortname(x, *args, **kwargs))
 def mo_subspecies(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_subspecies(x, *args, **kwargs))
 def mo_species(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_species(x, *args, **kwargs))
 def mo_genus(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_genus(x, *args, **kwargs))
 def mo_family(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_family(x, *args, **kwargs))
 def mo_order(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_order(x, *args, **kwargs))
 def mo_class(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_class(x, *args, **kwargs))
 def mo_phylum(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_phylum(x, *args, **kwargs))
 def mo_kingdom(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_kingdom(x, *args, **kwargs))
 def mo_domain(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_domain(x, *args, **kwargs))
 def mo_type(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_type(x, *args, **kwargs))
 def mo_status(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_status(x, *args, **kwargs))
 def mo_pathogenicity(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_pathogenicity(x, *args, **kwargs))
 def mo_gramstain(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_gramstain(x, *args, **kwargs))
 def mo_is_gram_negative(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_is_gram_negative(x, *args, **kwargs))
 def mo_is_gram_positive(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_is_gram_positive(x, *args, **kwargs))
 def mo_is_yeast(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_is_yeast(x, *args, **kwargs))
 def mo_is_intrinsic_resistant(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_is_intrinsic_resistant(x, *args, **kwargs))
 def mo_oxygen_tolerance(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_oxygen_tolerance(x, *args, **kwargs))
 def mo_is_anaerobic(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_is_anaerobic(x, *args, **kwargs))
 def mo_snomed(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_snomed(x, *args, **kwargs))
 def mo_ref(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_ref(x, *args, **kwargs))
 def mo_authors(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_authors(x, *args, **kwargs))
 def mo_year(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_year(x, *args, **kwargs))
 def mo_lpsn(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_lpsn(x, *args, **kwargs))
 def mo_mycobank(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_mycobank(x, *args, **kwargs))
 def mo_gbif(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_gbif(x, *args, **kwargs))
 def mo_rank(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_rank(x, *args, **kwargs))
 def mo_taxonomy(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_taxonomy(x, *args, **kwargs))
 def mo_synonyms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_synonyms(x, *args, **kwargs))
 def mo_current(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_current(x, *args, **kwargs))
 def mo_group_members(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_group_members(x, *args, **kwargs))
 def mo_info(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_info(x, *args, **kwargs))
 def mo_url(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_url(x, *args, **kwargs))
 def mo_property(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.mo_property(x, *args, **kwargs))
 def pca(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.pca(x, *args, **kwargs))
 def theme_sir(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.theme_sir(*args, **kwargs))
 def labels_sir_count(position = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.labels_sir_count(position = None, *args, **kwargs))
 def resistance(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.resistance(*args, **kwargs))
 def susceptibility(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.susceptibility(*args, **kwargs))
 def sir_confidence_interval(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.sir_confidence_interval(*args, **kwargs))
 def proportion_R(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.proportion_R(*args, **kwargs))
 def proportion_IR(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.proportion_IR(*args, **kwargs))
 def proportion_I(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.proportion_I(*args, **kwargs))
 def proportion_SI(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.proportion_SI(*args, **kwargs))
 def proportion_S(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.proportion_S(*args, **kwargs))
 def proportion_df(data, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.proportion_df(data, *args, **kwargs))
 def sir_df(data, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.sir_df(data, *args, **kwargs))
 def random_mic(size = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.random_mic(size = None, *args, **kwargs))
 def random_disk(size = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.random_disk(size = None, *args, **kwargs))
 def random_sir(size = None, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.random_sir(size = None, *args, **kwargs))
 def resistance_predict(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.resistance_predict(x, *args, **kwargs))
 def sir_predict(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.sir_predict(x, *args, **kwargs))
 def ggplot_sir_predict(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.ggplot_sir_predict(x, *args, **kwargs))
 def skewness(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.skewness(x, *args, **kwargs))
 def top_n_microorganisms(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.top_n_microorganisms(x, *args, **kwargs))
 def reset_AMR_locale(*args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.reset_AMR_locale(*args, **kwargs))
 def translate_AMR(x, *args, **kwargs):
-    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    """See our website of the R package for the manual: https://amr-for-r.org/index.html"""
     return convert_to_python(amr_r.translate_AMR(x, *args, **kwargs))

{amr-2.1.1.9234.dist-info → amr-2.1.1.9235.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: AMR
-Version: 2.1.1.9234
+Version: 2.1.1.9235
 Summary: A Python wrapper for the AMR R package
 Home-page: https://github.com/msberends/AMR
 Author: Matthijs Berends

amr-2.1.1.9235.dist-info/RECORD

@@ -0,0 +1,7 @@
+AMR/__init__.py,sha256=GjKrdgSCAbSFuemlXWWgmKxiYuN58XGj61iOvnyTLQw,7766
+AMR/datasets.py,sha256=jSUTkxtgx7a1vUHHt47POv0t9AYZUYzZZcjNlzyPgxk,2454
+AMR/functions.py,sha256=kzUpcHIGOvKv1PbfTumphJWVjL4I0hGkAiX9sDZ6Hg8,44887
+amr-2.1.1.9235.dist-info/METADATA,sha256=viU2pdXaReKegKgLtkNy03xeMFB5HQL04vqZSgXZzsw,10095
+amr-2.1.1.9235.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
+amr-2.1.1.9235.dist-info/top_level.txt,sha256=7K6Mq_X_OHdXOzQM5y06VUadXjYkze6yzufL1d7_6xc,4
+amr-2.1.1.9235.dist-info/RECORD,,

amr-2.1.1.9234.dist-info/RECORD

@@ -1,7 +0,0 @@
-AMR/__init__.py,sha256=GjKrdgSCAbSFuemlXWWgmKxiYuN58XGj61iOvnyTLQw,7766
-AMR/datasets.py,sha256=d-Tq77qFwR-m5Shc2n4BfHy6GYJW5A14w_dHU_Ndtc4,2482
-AMR/functions.py,sha256=TVY0Gh2ko82aq2ND39AEQSrKTBa7UP4No67elWmb_RY,46977
-amr-2.1.1.9234.dist-info/METADATA,sha256=HsBTiYyDH7PC6YFhsKC_CawS_Iv3YuJaVqHk5s8vteE,10095
-amr-2.1.1.9234.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
-amr-2.1.1.9234.dist-info/top_level.txt,sha256=7K6Mq_X_OHdXOzQM5y06VUadXjYkze6yzufL1d7_6xc,4
-amr-2.1.1.9234.dist-info/RECORD,,