AMR 2.1.1.9131__py3-none-any.whl → 2.1.1.9135__py3-none-any.whl

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Files changed (6) hide show
  1. AMR/datasets.py +4 -1
  2. {AMR-2.1.1.9131.dist-info → AMR-2.1.1.9135.dist-info}/METADATA +1 -1
  3. AMR-2.1.1.9135.dist-info/RECORD +7 -0
  4. AMR-2.1.1.9131.dist-info/RECORD +0 -7
  5. {AMR-2.1.1.9131.dist-info → AMR-2.1.1.9135.dist-info}/WHEEL +0 -0
  6. {AMR-2.1.1.9131.dist-info → AMR-2.1.1.9135.dist-info}/top_level.txt +0 -0
AMR/datasets.py CHANGED
@@ -18,8 +18,9 @@ os.makedirs(r_lib_path, exist_ok=True)
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  base = importr('base')
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  utils = importr('utils')
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+ base.options(warn = -1)
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+
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  # Override R library paths globally for the session
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- robjects.r(f'.Library <- "{r_lib_path}"') # Replace default library
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  robjects.r(f'.Library.site <- "{r_lib_path}"') # Replace site-specific library
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  base._libPaths(r_lib_path) # Override .libPaths() as well
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@@ -73,4 +74,6 @@ microorganisms = pandas2ri.rpy2py(robjects.r('AMR::microorganisms[, !sapply(AMR:
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  antibiotics = pandas2ri.rpy2py(robjects.r('AMR::antibiotics[, !sapply(AMR::antibiotics, is.list)]'))
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  clinical_breakpoints = pandas2ri.rpy2py(robjects.r('AMR::clinical_breakpoints[, !sapply(AMR::clinical_breakpoints, is.list)]'))
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+ base.options(warn = 0)
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+
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  print(f"AMR: Done.", flush=True)
{AMR-2.1.1.9131.dist-info → AMR-2.1.1.9135.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: AMR
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- Version: 2.1.1.9131
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+ Version: 2.1.1.9135
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  Summary: A Python wrapper for the AMR R package
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  Home-page: https://github.com/msberends/AMR
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  Author: Matthijs Berends
AMR-2.1.1.9135.dist-info/RECORD ADDED
@@ -0,0 +1,7 @@
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+ AMR/__init__.py,sha256=-3zoWVuhybnYkXePzljDrtcxxaAQscPpCPP75EiqLfQ,7540
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+ AMR/datasets.py,sha256=Jy39LLD1mP-MMPX59mjKQdmKeFz192kMQD3ty4tIFic,2609
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+ AMR/functions.py,sha256=JSh-0_mfrAj7ajpazlv2KFyEtRAglj7oQV9Iiaux7eo,45557
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+ AMR-2.1.1.9135.dist-info/METADATA,sha256=Pp2qa7Y5PuyyxGmr0W0DSNIMrzxNH7eumeuKnIGWXk4,9624
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+ AMR-2.1.1.9135.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
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+ AMR-2.1.1.9135.dist-info/top_level.txt,sha256=7K6Mq_X_OHdXOzQM5y06VUadXjYkze6yzufL1d7_6xc,4
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+ AMR-2.1.1.9135.dist-info/RECORD,,
AMR-2.1.1.9131.dist-info/RECORD DELETED
@@ -1,7 +0,0 @@
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- AMR/__init__.py,sha256=-3zoWVuhybnYkXePzljDrtcxxaAQscPpCPP75EiqLfQ,7540
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- AMR/datasets.py,sha256=t3ilqlqKu0rr4iHjG79fyWAXbdUw-WhCYyyeyZWxqoo,2629
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- AMR/functions.py,sha256=JSh-0_mfrAj7ajpazlv2KFyEtRAglj7oQV9Iiaux7eo,45557
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- AMR-2.1.1.9131.dist-info/METADATA,sha256=DiSb3VbJq3AYOELVYt8VEPdal0gyzkQZVKu-BTfvoDE,9624
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- AMR-2.1.1.9131.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
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- AMR-2.1.1.9131.dist-info/top_level.txt,sha256=7K6Mq_X_OHdXOzQM5y06VUadXjYkze6yzufL1d7_6xc,4
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- AMR-2.1.1.9131.dist-info/RECORD,,