AMR 2.1.1.9122__py3-none-any.whl → 2.1.1.9125__py3-none-any.whl

AMR/__init__.py

@@ -2,6 +2,8 @@ from .datasets import example_isolates
 from .datasets import microorganisms
 from .datasets import antibiotics
 from .datasets import clinical_breakpoints
+from .functions import ab_class
+from .functions import ab_selector
 from .functions import ab_from_text
 from .functions import ab_name
 from .functions import ab_cid
@@ -24,8 +26,8 @@ from .functions import clear_custom_microorganisms
 from .functions import age
 from .functions import age_groups
 from .functions import antibiogram
-from .functions import ab_class
-from .functions import ab_selector
+from .functions import amr_class
+from .functions import amr_selector
 from .functions import aminoglycosides
 from .functions import aminopenicillins
 from .functions import antifungals
@@ -47,6 +49,7 @@ from .functions import macrolides
 from .functions import nitrofurans
 from .functions import oxazolidinones
 from .functions import penicillins
+from .functions import phenicols
 from .functions import polymyxins
 from .functions import quinolones
 from .functions import rifamycins

AMR/functions.py

@@ -36,6 +36,12 @@ def convert_to_python(r_output):
     
     # Fall-back
     return r_output
+def ab_class(*args, **kwargs):
+    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    return convert_to_python(amr_r.ab_class(*args, **kwargs))
+def ab_selector(*args, **kwargs):
+    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    return convert_to_python(amr_r.ab_selector(*args, **kwargs))
 def ab_from_text(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.ab_from_text(*args, **kwargs))
@@ -102,15 +108,15 @@ def age_groups(x, *args, **kwargs):
 def antibiogram(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.antibiogram(*args, **kwargs))
-def ab_class(ab_class, *args, **kwargs):
+def amr_class(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
-    return convert_to_python(amr_r.ab_class(ab_class, *args, **kwargs))
-def ab_selector(filter, *args, **kwargs):
+    return convert_to_python(amr_r.amr_class(*args, **kwargs))
+def amr_selector(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
-    return convert_to_python(amr_r.ab_selector(filter, *args, **kwargs))
-def aminoglycosides(only_sir_columns = False, *args, **kwargs):
+    return convert_to_python(amr_r.amr_selector(*args, **kwargs))
+def aminoglycosides(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
-    return convert_to_python(amr_r.aminoglycosides(only_sir_columns = False, *args, **kwargs))
+    return convert_to_python(amr_r.aminoglycosides(*args, **kwargs))
 def aminopenicillins(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.aminopenicillins(only_sir_columns = False, *args, **kwargs))
@@ -120,15 +126,15 @@ def antifungals(only_sir_columns = False, *args, **kwargs):
 def antimycobacterials(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.antimycobacterials(only_sir_columns = False, *args, **kwargs))
-def betalactams(only_sir_columns = False, *args, **kwargs):
+def betalactams(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
-    return convert_to_python(amr_r.betalactams(only_sir_columns = False, *args, **kwargs))
+    return convert_to_python(amr_r.betalactams(*args, **kwargs))
 def betalactams_with_inhibitor(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.betalactams_with_inhibitor(only_sir_columns = False, *args, **kwargs))
-def carbapenems(only_sir_columns = False, *args, **kwargs):
+def carbapenems(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
-    return convert_to_python(amr_r.carbapenems(only_sir_columns = False, *args, **kwargs))
+    return convert_to_python(amr_r.carbapenems(*args, **kwargs))
 def cephalosporins(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.cephalosporins(only_sir_columns = False, *args, **kwargs))
@@ -153,9 +159,9 @@ def fluoroquinolones(only_sir_columns = False, *args, **kwargs):
 def glycopeptides(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.glycopeptides(only_sir_columns = False, *args, **kwargs))
-def lincosamides(only_sir_columns = False, *args, **kwargs):
+def lincosamides(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
-    return convert_to_python(amr_r.lincosamides(only_sir_columns = False, *args, **kwargs))
+    return convert_to_python(amr_r.lincosamides(*args, **kwargs))
 def lipoglycopeptides(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.lipoglycopeptides(only_sir_columns = False, *args, **kwargs))
@@ -171,9 +177,12 @@ def oxazolidinones(only_sir_columns = False, *args, **kwargs):
 def penicillins(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.penicillins(only_sir_columns = False, *args, **kwargs))
-def polymyxins(only_sir_columns = False, *args, **kwargs):
+def phenicols(only_sir_columns = False, *args, **kwargs):
+    """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
+    return convert_to_python(amr_r.phenicols(only_sir_columns = False, *args, **kwargs))
+def polymyxins(*args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
-    return convert_to_python(amr_r.polymyxins(only_sir_columns = False, *args, **kwargs))
+    return convert_to_python(amr_r.polymyxins(*args, **kwargs))
 def quinolones(only_sir_columns = False, *args, **kwargs):
     """See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
     return convert_to_python(amr_r.quinolones(only_sir_columns = False, *args, **kwargs))

{AMR-2.1.1.9122.dist-info → AMR-2.1.1.9125.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: AMR
-Version: 2.1.1.9122
+Version: 2.1.1.9125
 Summary: A Python wrapper for the AMR R package
 Home-page: https://github.com/msberends/AMR
 Author: Matthijs Berends
@@ -14,6 +14,17 @@ Description-Content-Type: text/markdown
 Requires-Dist: rpy2
 Requires-Dist: numpy
 Requires-Dist: pandas
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license
+Dynamic: project-url
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
 
 
 The `AMR` package for R is a powerful tool for antimicrobial resistance (AMR) analysis. It provides extensive features for handling microbial and antimicrobial data. However, for those who work primarily in Python, we now have a more intuitive option available: the [`AMR` Python Package Index](https://pypi.org/project/AMR/).

AMR-2.1.1.9125.dist-info/RECORD

@@ -0,0 +1,7 @@
+AMR/__init__.py,sha256=cSUa6bz_aXEUR5o0D3dh8opo6XdlgS10hoIgYH1r_mY,7467
+AMR/datasets.py,sha256=IDeqfVGjzvhMhKZRlS6Pc3xIO4HBlRDvPdQjDQ8qVTc,2426
+AMR/functions.py,sha256=FmEKlH-hCyJBaJIU6dCX6WAKjYhhpGAo4qSwHP_XkzE,44231
+AMR-2.1.1.9125.dist-info/METADATA,sha256=-djWW_YblmGp77vLBC2SNMUBvzH9h2kciSISdA1s8cE,9625
+AMR-2.1.1.9125.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+AMR-2.1.1.9125.dist-info/top_level.txt,sha256=7K6Mq_X_OHdXOzQM5y06VUadXjYkze6yzufL1d7_6xc,4
+AMR-2.1.1.9125.dist-info/RECORD,,

{AMR-2.1.1.9122.dist-info → AMR-2.1.1.9125.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.6.0)
+Generator: setuptools (75.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

AMR-2.1.1.9122.dist-info/RECORD

@@ -1,7 +0,0 @@
-AMR/__init__.py,sha256=8hgiVqjC1kzed13FQAb9cyqY2B-bL7WHKTXihX5ozl4,7365
-AMR/datasets.py,sha256=IDeqfVGjzvhMhKZRlS6Pc3xIO4HBlRDvPdQjDQ8qVTc,2426
-AMR/functions.py,sha256=8RzhIJtJDndVVxP9jyYSVqUErvLshmGg5_Ra-iWCjK4,43878
-AMR-2.1.1.9122.dist-info/METADATA,sha256=fjdb5KVb0mfh4R9JmO7IwWLz9cQv1xWOLQBnzmOqkLU,9390
-AMR-2.1.1.9122.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-AMR-2.1.1.9122.dist-info/top_level.txt,sha256=7K6Mq_X_OHdXOzQM5y06VUadXjYkze6yzufL1d7_6xc,4
-AMR-2.1.1.9122.dist-info/RECORD,,